##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545010_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 559957 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91934380675659 34.0 33.0 34.0 31.0 34.0 2 33.21638625823054 34.0 33.0 34.0 31.0 34.0 3 33.265656112880094 34.0 34.0 34.0 31.0 34.0 4 36.55284066455103 37.0 37.0 37.0 35.0 37.0 5 36.54053436245997 37.0 37.0 37.0 35.0 37.0 6 36.65782015404754 37.0 37.0 37.0 35.0 37.0 7 36.470141457290474 37.0 37.0 37.0 35.0 37.0 8 36.523727714806675 37.0 37.0 37.0 35.0 37.0 9 38.320926428279314 39.0 39.0 39.0 37.0 39.0 10 38.10217213107435 39.0 39.0 39.0 35.0 39.0 11 37.22618879663974 39.0 35.0 39.0 35.0 39.0 12 37.10666354737953 39.0 35.0 39.0 35.0 39.0 13 37.09466619758303 39.0 35.0 39.0 35.0 39.0 14 38.3238677255575 40.0 35.0 41.0 35.0 41.0 15 38.404500702732534 40.0 35.0 41.0 35.0 41.0 16 38.418950026519894 40.0 35.0 41.0 35.0 41.0 17 38.523804506417456 40.0 36.0 41.0 35.0 41.0 18 38.513303700105546 40.0 36.0 41.0 35.0 41.0 19 38.39836630312685 40.0 35.0 41.0 35.0 41.0 20 38.30507699698369 40.0 35.0 41.0 35.0 41.0 21 38.255058870591846 40.0 35.0 41.0 35.0 41.0 22 38.23157492450313 40.0 35.0 41.0 35.0 41.0 23 38.21843105809911 40.0 35.0 41.0 35.0 41.0 24 38.16130345722975 40.0 35.0 41.0 35.0 41.0 25 38.12825806267267 40.0 35.0 41.0 35.0 41.0 26 38.09840041288885 40.0 35.0 41.0 35.0 41.0 27 38.12317910125242 40.0 35.0 41.0 35.0 41.0 28 38.1348978582284 40.0 35.0 41.0 35.0 41.0 29 38.161707059649224 40.0 35.0 41.0 35.0 41.0 30 38.05462026548467 40.0 35.0 41.0 35.0 41.0 31 37.998524886732376 40.0 35.0 41.0 35.0 41.0 32 37.91826693835419 40.0 35.0 41.0 35.0 41.0 33 37.863360936643346 40.0 35.0 41.0 35.0 41.0 34 37.786496105950995 40.0 35.0 41.0 35.0 41.0 35 37.726898672576645 40.0 35.0 41.0 35.0 41.0 36 37.68351141248346 40.0 35.0 41.0 35.0 41.0 37 37.64346726623651 40.0 35.0 41.0 35.0 41.0 38 37.591429341895896 40.0 35.0 41.0 35.0 41.0 39 37.49726496856009 40.0 35.0 41.0 35.0 41.0 40 37.427973933712764 39.0 35.0 41.0 34.0 41.0 41 37.41740526504714 39.0 35.0 41.0 34.0 41.0 42 37.322424757615316 39.0 35.0 41.0 35.0 41.0 43 37.235201988724135 39.0 35.0 41.0 34.0 41.0 44 37.167975398110926 39.0 35.0 41.0 34.0 41.0 45 37.13787665838627 39.0 35.0 41.0 34.0 41.0 46 37.16056768644735 39.0 35.0 41.0 34.0 41.0 47 37.128449148773925 38.0 35.0 41.0 35.0 41.0 48 37.167857531917626 38.0 35.0 41.0 35.0 41.0 49 37.08038831553137 38.0 35.0 41.0 34.0 41.0 50 36.99299410490448 38.0 35.0 41.0 34.0 41.0 51 36.92974996294358 38.0 35.0 41.0 34.0 41.0 52 36.73963357900696 37.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 6.0 14 8.0 15 6.0 16 4.0 17 25.0 18 59.0 19 81.0 20 159.0 21 239.0 22 409.0 23 679.0 24 1118.0 25 1915.0 26 2364.0 27 2860.0 28 2830.0 29 3095.0 30 3791.0 31 4596.0 32 6087.0 33 9115.0 34 27718.0 35 139392.0 36 17839.0 37 26581.0 38 48883.0 39 256523.0 40 3573.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.43238855840716 22.74906823202496 24.043631921736846 19.774911287831028 2 26.277732040138797 23.80914963113239 27.00528790603564 22.90783042269317 3 25.167289631168106 25.504101207771313 26.534358888271782 22.794250272788805 4 26.10075416505196 26.909387685125825 23.255357107777918 23.7345010420443 5 22.943011695540907 36.69799645329909 21.03429370469518 19.324698146464815 6 87.16026409170703 2.8270027877140564 7.148048868038082 2.8646842525408203 7 86.60450713179763 2.760390529987124 5.265582892972139 5.369519445243117 8 76.399437813975 4.714469146738053 11.79251263936338 7.093580399923566 9 53.47910643138669 16.39768767958968 14.812030209462513 15.31117567956111 10 45.49045730297148 18.429986588255883 24.439198009847185 11.640358098925454 11 43.029375469902156 16.117844763080022 23.85129572449313 17.001484042524694 12 20.091899913743376 36.55084229681922 27.380138117748327 15.977119671689078 13 13.272090535523262 39.48142446652154 28.420217981023544 18.82626701693166 14 11.714470932589467 21.45807624514025 49.57755684811512 17.24989597415516 15 13.166725302121412 16.374114440930285 49.91133247731522 20.547827779633078 16 12.99081893788273 19.53489285784444 29.27028325389271 38.20400495038012 17 17.811546243729428 22.192596931550103 36.717640818848594 23.27821600587188 18 25.3531967633229 26.552574572690403 27.01296706711408 21.081261596872615 19 27.135119303803684 22.69888580730306 25.671078314942044 24.494916573951215 20 18.25765192684438 32.443919800984716 27.08261527224412 22.21581299992678 21 19.568645449561306 24.774580905319514 24.354905823125705 31.301867821993472 22 16.496802433043968 32.69161739204975 22.11794834246201 28.69363183244428 23 16.98112533640976 22.39189794930682 38.94120441391035 21.685772300373067 24 16.656457549418974 22.65691829908368 36.69210314363424 23.994521007863103 25 14.184482022726744 31.104888411074423 30.96577058595571 23.744858980243126 26 17.236859258835945 30.721108942293785 27.31459737086955 24.727434428000723 27 17.978880521182877 26.874384997419444 38.194004182464006 16.95273029893367 28 15.756209851827908 23.57734611764832 33.32916634670162 27.337277683822155 29 17.42187346528394 28.11055134590692 30.94951933809203 23.518055850717108 30 26.24647964040096 24.260434283346758 25.017456697567848 24.475629378684435 31 28.05661863321648 21.902396076841615 25.923419119682407 24.1175661702595 32 23.425191577210395 24.22382432936815 30.078381018542494 22.272603074878962 33 15.746030498770441 22.671205110392407 31.020953394635658 30.561810996201494 34 16.023194638159715 20.792489423295002 36.25617681357676 26.928139124968524 35 28.75595804677859 18.843946945926206 27.442642917224003 24.957452090071204 36 18.6607185908918 24.532062283353902 32.11889484371122 24.688324282043087 37 19.90849297356761 26.407027682482763 28.925613931069705 24.758865412879917 38 19.4434572654686 25.52392415846217 27.69998410592242 27.332634470146814 39 26.550074380711376 19.549536839435884 27.153156403080953 26.74723237677179 40 14.802208026687763 18.528029830862014 31.815478688542154 34.85428345390807 41 20.760879853274446 22.097768221488437 26.819916529304926 30.321435395932188 42 21.016792360841993 20.295844145175433 29.795502154629734 28.891861339352843 43 21.157160281950222 25.26979750230821 28.995440721341105 24.577601494400465 44 14.91400232517854 30.445373484035382 29.135272887025256 25.505351303760825 45 21.178054743489234 27.27048684095386 28.10787256878653 23.443585846770375 46 22.21045544568601 20.601581907182158 30.432872524140247 26.755090122991586 47 22.56494695128376 17.8819087894249 32.930564311188185 26.62257994810316 48 19.915993549504694 16.48055118518029 30.794686020533717 32.808769244781296 49 20.198336657993384 23.957911053884494 31.098459345985496 24.74529294213663 50 18.7069721425038 25.480527969111915 27.756059840309167 28.05644004807512 51 18.874663590239965 20.290308005793303 32.95645915668525 27.878569247281487 52 23.112131824407946 17.638675826893852 34.884642927939105 24.364549420759094 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 100.0 1 152.0 2 204.0 3 918.0 4 1632.0 5 1139.0 6 646.0 7 755.0 8 864.0 9 902.5 10 941.0 11 909.5 12 878.0 13 860.5 14 812.0 15 781.0 16 704.0 17 627.0 18 672.5 19 718.0 20 704.0 21 690.0 22 885.0 23 1080.0 24 1062.0 25 1044.0 26 1358.5 27 1673.0 28 2536.0 29 3399.0 30 3499.0 31 3599.0 32 4264.0 33 4929.0 34 5446.0 35 5963.0 36 7429.5 37 8896.0 38 10427.5 39 13794.5 40 15630.0 41 23232.5 42 30835.0 43 42443.5 44 54052.0 45 61606.0 46 69160.0 47 71693.0 48 74226.0 49 72178.5 50 70131.0 51 62428.0 52 54725.0 53 45889.5 54 37054.0 55 30608.0 56 24162.0 57 21132.5 58 18103.0 59 17213.0 60 16323.0 61 15388.5 62 14454.0 63 12654.0 64 8762.5 65 6671.0 66 5544.5 67 4418.0 68 3624.0 69 2830.0 70 2338.0 71 1846.0 72 1434.5 73 1023.0 74 913.0 75 803.0 76 676.5 77 550.0 78 457.5 79 365.0 80 269.5 81 174.0 82 124.0 83 74.0 84 51.0 85 28.0 86 14.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 559957.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.565979870956404 #Duplication Level Percentage of deduplicated Percentage of total 1 69.63327761639553 17.106096962730916 2 12.156477886047206 5.972715821007247 3 4.679491670008564 3.4486889451521554 4 2.290733158531922 2.2509641864891035 5 1.2800450231787373 1.5722780136663388 6 0.8387017228056138 1.23621177841075 7 0.6007856500791187 1.0331221730622158 8 0.44761689184455056 0.8796918043962638 9 0.39149694512460775 0.8655755466124836 >10 6.562312740465368 43.070373537379844 >50 0.9706287176996675 15.374126311005758 >100 0.14042829274065655 5.250782850208171 >500 0.005820861875260375 0.9332222651462712 >1k 0.002182823203222641 1.0061498047324957 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 2278 0.40681695201595836 TruSeq Adapter, Index 23 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 1741 0.3109167311061385 TruSeq Adapter, Index 23 (96% over 25bp) CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCTT 1610 0.2875220775881005 Illumina Single End Adapter 1 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 889 0.158762190668212 No Hit ACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 702 0.12536676923406617 Illumina Single End Adapter 1 (95% over 21bp) GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 696 0.12429525838591178 No Hit TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 692 0.1235809178204755 TruSeq Adapter, Index 23 (96% over 25bp) GCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 647 0.11554458645931741 TruSeq Adapter, Index 23 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29127236555664093 0.0 2 0.0 0.0 0.0 1.2367021039115504 0.0 3 0.0 0.0 0.0 2.0071184037345726 0.0 4 0.0 0.0 0.0 2.469118164430483 0.0 5 0.0 0.0 0.0 5.1953989324180245 0.0 6 0.0 0.0 0.0 5.715796034338351 0.0 7 0.0 0.0 0.0 8.64780688517154 0.0 8 0.0 0.0 0.0 11.689290427657838 0.0 9 0.0 0.0 0.0 14.878285296906727 0.0 10 0.0 0.0 0.0 16.025873415280103 0.0 11 0.0 0.0 0.0 17.13595865396807 0.0 12 0.0 0.0 0.0 18.076923763789004 0.0 13 0.0 0.0 0.0 18.414449680957645 0.0 14 0.0 0.0 0.0 18.674648231917807 0.0 15 0.0 0.0 0.0 19.64400837921483 0.0 16 0.0 0.0 0.0 20.679087858531993 0.0 17 0.0 0.0 0.0 22.34635873826026 0.0 18 0.0 0.0 0.0 22.92943922479762 0.0 19 0.0 0.0 0.0 23.721285741583728 0.0 20 0.0 0.0 0.0 24.554206840882426 0.0 21 0.0 0.0 0.0 25.253724839585896 0.0 22 0.0 0.0 0.0 26.11021917754399 0.0 23 0.0 0.0 0.0 26.666869063160206 0.0 24 0.0 0.0 0.0 27.13029750498699 0.0 25 0.0 0.0 0.0 27.605155395860752 0.0 26 0.0 0.0 0.0 28.05268976010658 0.0 27 0.0 0.0 0.0 28.514332350519773 0.0 28 0.0 0.0 0.0 28.941329423509305 0.0 29 0.0 0.0 0.0 29.5408397430517 0.0 30 0.0 0.0 0.0 30.099454065222865 0.0 31 0.0 0.0 0.0 30.561989581342853 0.0 32 0.0 0.0 0.0 31.0050593170547 0.0 33 0.0 0.0 0.0 31.41026900279843 0.0 34 0.0 0.0 0.0 32.053711267115155 0.0 35 0.0 0.0 0.0 32.4928521297171 0.0 36 0.0 0.0 0.0 32.953066038999424 0.0 37 0.0 0.0 0.0 33.390063879905064 0.0 38 0.0 0.0 0.0 33.76419975105231 0.0 39 0.0 0.0 0.0 34.245129536732286 0.0 40 0.0 0.0 0.0 34.70284325403558 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCCA 20 6.3086674E-4 46.000004 29 ACCGGGT 20 6.3086674E-4 46.000004 3 CTCGTTA 20 6.3086674E-4 46.000004 44 TAGACTA 20 6.3086674E-4 46.000004 19 CGGCCTT 20 6.3086674E-4 46.000004 5 TCCGAGT 20 6.3086674E-4 46.000004 15 TCCGAAT 20 6.3086674E-4 46.000004 12 TTAGATC 20 6.3086674E-4 46.000004 12 TTGCTAG 20 6.3086674E-4 46.000004 35 TAGGTAT 20 6.3086674E-4 46.000004 16 CTATACG 20 6.3086674E-4 46.000004 13 ATTCGAA 20 6.3086674E-4 46.000004 41 CGACAAT 40 5.6024874E-9 46.000004 19 TGCGGAA 20 6.3086674E-4 46.000004 3 ATATCGG 20 6.3086674E-4 46.000004 39 TCGGAGA 20 6.3086674E-4 46.000004 29 AAGTTGG 40 5.6024874E-9 46.000004 1 TTGACAC 20 6.3086674E-4 46.000004 14 GATATCG 20 6.3086674E-4 46.000004 38 GTCCGAA 20 6.3086674E-4 46.000004 11 >>END_MODULE