##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545005_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 808962 Sequences flagged as poor quality 0 Sequence length 52 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.852513467876115 34.0 33.0 34.0 31.0 34.0 2 33.236566118062406 34.0 33.0 34.0 31.0 34.0 3 33.36316662587365 34.0 34.0 34.0 31.0 34.0 4 36.58911172589071 37.0 37.0 37.0 35.0 37.0 5 36.55839458466529 37.0 37.0 37.0 35.0 37.0 6 36.35047258091233 37.0 37.0 37.0 35.0 37.0 7 36.186965518775914 37.0 37.0 37.0 35.0 37.0 8 36.340203866189015 37.0 37.0 37.0 35.0 37.0 9 38.24607336314932 39.0 39.0 39.0 37.0 39.0 10 38.140819964349376 39.0 39.0 39.0 35.0 39.0 11 37.59568187380866 39.0 37.0 39.0 35.0 39.0 12 37.55423616931327 39.0 37.0 39.0 35.0 39.0 13 37.48858660851808 39.0 37.0 39.0 35.0 39.0 14 38.771131400486055 41.0 37.0 41.0 35.0 41.0 15 38.79978787631558 41.0 37.0 41.0 35.0 41.0 16 38.82680645073563 41.0 37.0 41.0 35.0 41.0 17 38.90228836459562 41.0 37.0 41.0 35.0 41.0 18 38.89826098135636 41.0 37.0 41.0 35.0 41.0 19 38.85828629774946 41.0 37.0 41.0 35.0 41.0 20 38.812347180708116 41.0 35.0 41.0 35.0 41.0 21 38.75865491827799 41.0 35.0 41.0 35.0 41.0 22 38.70951911214618 41.0 35.0 41.0 35.0 41.0 23 38.680035650623886 41.0 35.0 41.0 35.0 41.0 24 38.64302155107409 41.0 35.0 41.0 35.0 41.0 25 38.56045895851721 40.0 35.0 41.0 35.0 41.0 26 38.48559759296481 40.0 35.0 41.0 35.0 41.0 27 38.55850831064994 40.0 36.0 41.0 35.0 41.0 28 38.559986748450484 40.0 36.0 41.0 35.0 41.0 29 38.575929400886565 40.0 36.0 41.0 35.0 41.0 30 38.519758653682125 40.0 35.0 41.0 35.0 41.0 31 38.46737053161953 40.0 35.0 41.0 35.0 41.0 32 38.38228248051206 40.0 35.0 41.0 35.0 41.0 33 38.254152852667985 40.0 35.0 41.0 35.0 41.0 34 38.16479018791983 40.0 35.0 41.0 35.0 41.0 35 38.098338364472 40.0 35.0 41.0 35.0 41.0 36 37.987521045487924 40.0 35.0 41.0 35.0 41.0 37 37.974171839962814 40.0 35.0 41.0 35.0 41.0 38 37.875859434682965 40.0 35.0 41.0 35.0 41.0 39 37.79379995599299 40.0 35.0 41.0 35.0 41.0 40 37.71683342357243 40.0 35.0 41.0 35.0 41.0 41 37.69272351482517 40.0 35.0 41.0 35.0 41.0 42 37.64437019291388 40.0 35.0 41.0 35.0 41.0 43 37.6015066220663 40.0 35.0 41.0 35.0 41.0 44 37.48137860616444 39.0 35.0 41.0 35.0 41.0 45 37.485811447262044 39.0 35.0 41.0 35.0 41.0 46 37.41897023593197 39.0 35.0 41.0 35.0 41.0 47 37.3219360118275 39.0 35.0 41.0 35.0 41.0 48 37.23936723851059 39.0 35.0 41.0 34.0 41.0 49 37.22090036367592 39.0 35.0 41.0 34.0 41.0 50 37.157742885327124 39.0 35.0 41.0 34.0 41.0 51 37.08669875717277 39.0 35.0 41.0 34.0 41.0 52 36.62457074621552 38.0 35.0 40.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 0.0 12 1.0 13 7.0 14 5.0 15 15.0 16 26.0 17 38.0 18 87.0 19 110.0 20 231.0 21 346.0 22 585.0 23 912.0 24 1537.0 25 2369.0 26 3535.0 27 3993.0 28 4001.0 29 4090.0 30 4737.0 31 6002.0 32 7751.0 33 11957.0 34 46685.0 35 128316.0 36 32490.0 37 53647.0 38 95220.0 39 398742.0 40 1526.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.18241647938964 21.133996405269965 21.88767828402323 20.79590883131717 2 30.82382114363839 23.23149913098514 24.01707373152262 21.927605993853852 3 29.88310946620484 23.642272442957765 24.240693629614245 22.233924461223147 4 27.700065021595577 25.30452604695894 22.108949493301292 24.88645943814419 5 24.71092585313031 33.79528333840155 22.380037628467097 19.11375318000104 6 83.15384406189659 2.8614446661277047 10.332376551679808 3.652334720295886 7 84.59321945901044 3.003849377350234 7.287116082090382 5.1158150815489485 8 72.99428156081497 5.263658861602893 13.818077981413218 7.923981596168918 9 50.77061716125109 17.70763027187927 16.491133081652784 15.030619485216858 10 39.485785488069894 19.83084495934296 26.0731653649986 14.610204187588538 11 35.999836827935056 18.042874696215645 24.96062855857259 20.99665991727671 12 23.722869553823294 24.488789337447248 31.18317053211399 20.605170576615464 13 18.93030822214146 26.425345071832794 33.043455687659 21.600891018366745 14 17.70750665667856 22.011417099937944 39.03384831425951 21.247227929123987 15 20.464002017400077 19.24169491274003 38.663991633723214 21.63031143613668 16 22.079034614728503 21.695703877314383 28.267582408073554 27.957679099883553 17 21.734766280740008 22.712686133588473 30.647669482620937 24.904878103050578 18 23.60222111792643 26.473678615311968 28.6219871885206 21.302113078241007 19 25.128374385941495 23.52718669109303 25.67302296028738 25.6714159626781 20 22.94730778454365 29.105199008111633 26.87505717203033 21.07243603531439 21 22.070999626682095 22.538759546183876 28.041984666770503 27.348256160363526 22 20.731628926945888 25.73668478865509 26.866651338381782 26.66503494601724 23 21.78359428502204 22.178792081704703 32.60659956833572 23.431014064937536 24 24.29570239393198 21.240923553887576 28.766864203757407 25.696509848423045 25 19.081242382213258 25.544710381946246 29.492485431948595 25.881561803891902 26 19.701543459396113 24.989801745941094 27.9704114655571 27.338243329105694 27 22.85434915360672 23.83511215607161 30.477945812040613 22.83259287828106 28 20.39242881618667 24.422902435466685 27.65408016692997 27.53058858141668 29 22.7084832167642 23.096634947006166 26.70644603825643 27.488435797973203 30 26.080335046640013 22.570281422365944 25.191912599108484 26.157470931885552 31 28.312083880330597 22.523184030893912 22.260872574978798 26.90385951379669 32 25.36472664970666 22.167048637636874 24.12400088014023 28.344223832516235 33 19.452335214756687 23.853283590576567 28.91223567979707 27.782145514869672 34 23.178839055480974 20.823722251477818 27.63071689399502 28.366721799046186 35 27.749140256279038 22.30685742964441 23.847968136945862 26.096034177130694 36 23.541526054375854 24.65134332638616 25.83026149559559 25.9768691236424 37 24.75369671257735 24.970517774629712 26.332262825695153 23.943522687097786 38 24.220915197500005 22.75483891703195 25.898002625586862 27.126243259881182 39 28.01429486181057 20.60714841982689 26.954541746089433 24.424014972273113 40 20.81667618503712 19.416734036951055 31.703961372722077 28.06262840528974 41 22.047018277743575 22.761884983472648 25.888731485533313 29.30236525325046 42 21.646010566627357 19.38817892558612 29.557754257925588 29.40805624986093 43 23.148182485703902 23.66303979667772 27.446777475332585 25.742000242285794 44 20.761420190317963 23.868982721067244 26.823386018131878 28.54621107048291 45 22.625290186683674 23.205169093233057 26.25042956282248 27.919111157260783 46 24.958279869759025 20.037653190137487 28.263008645647137 26.741058294456355 47 22.18151161612041 19.831586650547244 31.0931786659942 26.893723067338144 48 21.79657388109701 19.45480751877097 27.84543649763524 30.90318210249678 49 22.60402837216087 21.020146805412367 30.13862208608068 26.23720273634608 50 21.701513791747946 22.039601365700737 28.962917912089814 27.295966930461507 51 21.754421097653537 19.132913536111708 28.751906764471013 30.36075860176374 52 22.444441148039093 18.146340619213262 32.89289237318935 26.5163258595583 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 115.0 1 356.0 2 597.0 3 2470.0 4 4343.0 5 2854.5 6 1366.0 7 1362.5 8 1359.0 9 1385.0 10 1411.0 11 1349.0 12 1287.0 13 1210.0 14 1082.5 15 1032.0 16 1046.5 17 1061.0 18 1052.5 19 1044.0 20 1124.0 21 1204.0 22 1376.5 23 1549.0 24 1579.5 25 1610.0 26 2109.5 27 2609.0 28 3184.5 29 3760.0 30 4375.5 31 4991.0 32 5645.0 33 6299.0 34 7863.0 35 9427.0 36 10860.5 37 12294.0 38 13365.0 39 15609.5 40 16783.0 41 21503.5 42 26224.0 43 32782.0 44 39340.0 45 43710.0 46 48080.0 47 52201.5 48 56323.0 49 70158.5 50 83994.0 51 88859.0 52 93724.0 53 87903.0 54 82082.0 55 71080.0 56 60078.0 57 53724.5 58 47371.0 59 44632.5 60 41894.0 61 38605.5 62 35317.0 63 34242.5 64 27692.0 65 22216.0 66 18920.0 67 15624.0 68 13105.0 69 10586.0 70 9212.5 71 7839.0 72 6764.0 73 5689.0 74 4868.0 75 4047.0 76 3496.0 77 2945.0 78 2226.5 79 1508.0 80 1013.5 81 519.0 82 493.5 83 468.0 84 300.5 85 133.0 86 93.0 87 53.0 88 30.0 89 12.5 90 18.0 91 11.0 92 4.0 93 2.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 808962.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.115515327289327 #Duplication Level Percentage of deduplicated Percentage of total 1 71.7830001378992 22.335650410296143 2 10.367432646900482 6.4517601885854345 3 3.627105083996561 3.3857773150435215 4 1.9079098592782198 2.374623938778315 5 1.2444144215915756 1.936029800426628 6 0.9916389021580369 1.8513213275540854 7 0.8401428602441015 1.8299034631526625 8 0.7277143025449002 1.8114564427778805 9 0.6624588524234234 1.8551473718651574 >10 7.576328629599619 42.805769388164016 >50 0.18854411445671687 3.9080800994495313 >100 0.07135178858551916 4.285505158709928 >500 0.007573653537010409 1.627653513479694 >1k 0.004384746784584974 3.5413215817170016 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 4075 0.5037319429095557 No Hit CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT 3818 0.47196283632605734 Illumina Single End Adapter 2 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 3105 0.38382519821697436 No Hit CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCTT 3076 0.3802403573962683 Illumina Single End Adapter 2 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT 3057 0.37789166858270223 Illumina Single End Adapter 2 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 3038 0.37554297976913625 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2388 0.29519309930503534 No Hit TGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCTTG 1937 0.23944264378302071 Illumina Single End Adapter 2 (95% over 23bp) GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1596 0.19728986033954624 No Hit GGGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT 1412 0.17454466340817 No Hit CGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 1050 0.12979596074970148 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 968 0.11965951429115335 No Hit ACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 956 0.11817613188258534 No Hit TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT 863 0.10667991821618321 Illumina Single End Adapter 2 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 856 0.10581461181118519 No Hit GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCG 810 0.10012831257834114 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.236152007140014E-4 0.0 0.0 0.3860502718298264 0.0 2 1.236152007140014E-4 0.0 0.0 1.4533439147945144 0.0 3 1.236152007140014E-4 0.0 0.0 2.2420088953498434 0.0 4 1.236152007140014E-4 0.0 0.0 2.7888825433085858 0.0 5 1.236152007140014E-4 0.0 0.0 5.717573878624707 0.0 6 1.236152007140014E-4 0.0 0.0 6.2923845619448135 0.0 7 1.236152007140014E-4 0.0 0.0 8.40509195734781 0.0 8 1.236152007140014E-4 0.0 0.0 10.761197682956677 0.0 9 1.236152007140014E-4 0.0 0.0 12.773158689777764 0.0 10 1.236152007140014E-4 0.0 0.0 14.04577718112841 0.0 11 1.236152007140014E-4 0.0 0.0 15.214806134280721 0.0 12 1.236152007140014E-4 0.0 0.0 16.205458352802726 0.0 13 1.236152007140014E-4 0.0 0.0 16.699548310056592 0.0 14 1.236152007140014E-4 0.0 0.0 16.991651029343775 0.0 15 1.236152007140014E-4 0.0 0.0 17.957332977321556 0.0 16 1.236152007140014E-4 0.0 0.0 18.90187672597724 0.0 17 2.472304014280028E-4 0.0 0.0 20.062747075882427 0.0 18 2.472304014280028E-4 0.0 0.0 20.77464701679436 0.0 19 3.708456021420042E-4 0.0 0.0 21.490255413727716 0.0 20 3.708456021420042E-4 0.0 0.0 22.387207310108508 0.0 21 3.708456021420042E-4 0.0 0.0 23.183907278710247 0.0 22 3.708456021420042E-4 0.0 0.0 24.03660493323543 0.0 23 3.708456021420042E-4 0.0 0.0 24.668278608883977 0.0 24 7.416912042840084E-4 0.0 0.0 25.236414071365527 0.0 25 7.416912042840084E-4 0.0 0.0 25.795896469797096 0.0 26 7.416912042840084E-4 0.0 0.0 26.33597128171657 0.0 27 7.416912042840084E-4 0.0 0.0 26.824869400540447 0.0 28 8.653064049980098E-4 0.0 0.0 27.37619319572489 0.0 29 8.653064049980098E-4 0.0 0.0 27.96274732311283 0.0 30 8.653064049980098E-4 0.0 0.0 28.88578202684428 0.0 31 8.653064049980098E-4 0.0 0.0 29.419552463527335 0.0 32 8.653064049980098E-4 0.0 0.0 29.965684420281793 0.0 33 8.653064049980098E-4 0.0 0.0 30.590435644690356 0.0 34 8.653064049980098E-4 0.0 0.0 31.304931504817283 0.0 35 8.653064049980098E-4 0.0 0.0 31.852052383177455 0.0 36 8.653064049980098E-4 0.0 0.0 32.40560125197475 0.0 37 8.653064049980098E-4 0.0 0.0 32.98263700890771 0.0 38 8.653064049980098E-4 0.0 0.0 33.72099060277244 0.0 39 8.653064049980098E-4 0.0 0.0 34.28010215560187 0.0 40 8.653064049980098E-4 0.0 0.0 34.82166034992991 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTCG 20 6.310339E-4 46.000004 31 CGTACCC 20 6.310339E-4 46.000004 35 TCGCCTA 25 3.4162527E-5 46.0 24 ATTACGG 45 3.092282E-10 46.0 1 CGGTCTA 60 0.0 46.0 30 ATATTGG 55 1.8189894E-12 46.0 1 CGAATAT 35 1.0190706E-7 45.999996 14 CGTTTTT 1590 0.0 44.119495 1 AATGCGG 80 0.0 43.125004 1 TACGGGA 150 0.0 42.93333 3 CTCACGA 70 0.0 42.714283 23 ATAGCGG 125 0.0 42.32 1 GGCGATA 125 0.0 42.32 7 ACGGGAT 180 0.0 42.166668 4 GGGCGAT 665 0.0 41.84962 6 GCGATAG 55 4.7293724E-11 41.81818 8 ACACGAC 200 0.0 41.399998 25 CTAGCGG 135 0.0 40.88889 1 TAGTAGG 130 0.0 40.69231 1 CGACGGT 85 0.0 40.588234 27 >>END_MODULE