SRR1544994_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544994_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2049509
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4866	0.2374227192952068	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	3820	0.1863861051598212	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	3499	0.17072381726550115	Illumina Single End Adapter 1 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3342	0.16306344592778077	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCTT	3290	0.16052625287324915	Illumina Single End Adapter 1 (95% over 23bp)
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2753	0.13432485536779784	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	2653	0.1294456379552371	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	2165	0.10563505698194056	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACA	20	6.312618E-4	46.0	37
CGGTCTA	145	0.0	42.827583	30
ACGTAGG	215	0.0	42.7907	1
CGTAGGG	770	0.0	41.81818	2
GCGATCG	50	8.731149E-10	41.399998	8
CGTTTTT	3460	0.0	41.213875	1
AACACGT	465	0.0	41.05376	40
TAGACGG	175	0.0	40.74286	1
TATGACC	1545	0.0	40.640778	27
ACGGGTA	170	0.0	40.588234	4
TCAACGC	1640	0.0	40.390244	15
ATCAACG	1650	0.0	40.145454	14
CGCAAGC	1660	0.0	40.042168	19
AACGCAA	1650	0.0	39.86667	17
CGCACTT	1455	0.0	39.835052	34
TAATCGT	220	0.0	39.727276	20
TAACGGG	475	0.0	39.70526	2
TCAAGCG	525	0.0	39.42857	16
CACTTAC	1460	0.0	39.22603	36
ATTGCGG	365	0.0	39.068493	1