##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544992_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 482681 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84342868271177 34.0 31.0 34.0 31.0 34.0 2 33.134113420664995 34.0 33.0 34.0 31.0 34.0 3 33.18126878828875 34.0 33.0 34.0 31.0 34.0 4 36.50307553021561 37.0 37.0 37.0 35.0 37.0 5 36.48574317199144 37.0 37.0 37.0 35.0 37.0 6 36.614745556589135 37.0 37.0 37.0 35.0 37.0 7 36.425479768211304 37.0 37.0 37.0 35.0 37.0 8 36.46694607825872 37.0 37.0 37.0 35.0 37.0 9 38.22584481261951 39.0 39.0 39.0 37.0 39.0 10 38.06944130802746 39.0 39.0 39.0 35.0 39.0 11 37.35187836272818 39.0 35.0 39.0 35.0 39.0 12 37.2310117862522 39.0 35.0 39.0 35.0 39.0 13 37.21018229431032 39.0 35.0 39.0 35.0 39.0 14 38.5139129155695 41.0 35.0 41.0 35.0 41.0 15 38.601065714208765 41.0 35.0 41.0 35.0 41.0 16 38.6183794265778 41.0 35.0 41.0 35.0 41.0 17 38.68326700243018 41.0 36.0 41.0 35.0 41.0 18 38.650241049471596 40.0 36.0 41.0 35.0 41.0 19 38.56465035913989 40.0 35.0 41.0 35.0 41.0 20 38.46775406531436 40.0 35.0 41.0 35.0 41.0 21 38.40968880067788 40.0 35.0 41.0 35.0 41.0 22 38.37827260654552 40.0 35.0 41.0 35.0 41.0 23 38.36224131465709 40.0 35.0 41.0 35.0 41.0 24 38.30707030108913 40.0 35.0 41.0 35.0 41.0 25 38.27414586445292 40.0 35.0 41.0 35.0 41.0 26 38.23821737337911 40.0 35.0 41.0 35.0 41.0 27 38.189124908583516 40.0 35.0 41.0 35.0 41.0 28 38.22768246523066 40.0 35.0 41.0 35.0 41.0 29 38.24584145636559 40.0 35.0 41.0 35.0 41.0 30 38.18011896055573 40.0 35.0 41.0 35.0 41.0 31 38.1090078126133 40.0 35.0 41.0 35.0 41.0 32 38.03517229806021 40.0 35.0 41.0 35.0 41.0 33 37.94403135818481 40.0 35.0 41.0 35.0 41.0 34 37.86332381013547 40.0 35.0 41.0 35.0 41.0 35 37.790256919166076 40.0 35.0 41.0 35.0 41.0 36 37.716705235963296 40.0 35.0 41.0 35.0 41.0 37 37.64901456655638 40.0 35.0 41.0 34.0 41.0 38 37.61563641411201 40.0 35.0 41.0 35.0 41.0 39 37.50489453697163 40.0 35.0 41.0 34.0 41.0 40 37.43471153826233 40.0 35.0 41.0 34.0 41.0 41 37.441395041445595 40.0 35.0 41.0 34.0 41.0 42 37.33490027575148 39.0 35.0 41.0 34.0 41.0 43 37.2496244931953 39.0 35.0 41.0 34.0 41.0 44 37.175295899362105 39.0 35.0 41.0 34.0 41.0 45 37.13951035984429 39.0 35.0 41.0 34.0 41.0 46 37.17136576745304 39.0 35.0 41.0 34.0 41.0 47 37.11061135615448 39.0 35.0 41.0 34.0 41.0 48 37.14532786664484 39.0 35.0 41.0 34.0 41.0 49 37.06483785357203 39.0 35.0 41.0 34.0 41.0 50 36.96312471383792 39.0 35.0 41.0 34.0 41.0 51 36.88847914046752 39.0 35.0 41.0 33.0 41.0 52 36.69336476886391 38.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 10.0 15 9.0 16 23.0 17 14.0 18 40.0 19 95.0 20 118.0 21 227.0 22 386.0 23 635.0 24 1170.0 25 1956.0 26 2715.0 27 2972.0 28 3001.0 29 3194.0 30 3661.0 31 4660.0 32 5955.0 33 8473.0 34 23970.0 35 98949.0 36 16643.0 37 24506.0 38 44562.0 39 232603.0 40 2131.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.655068254188585 22.646426936216674 24.861761701827913 20.83674310776683 2 26.611985970029895 23.777194461766673 27.251745977156755 22.359073591046673 3 26.6534212036521 24.47662120530951 26.33001920523078 22.539938385807602 4 26.274910344513252 26.91653493715311 23.93526987803539 22.87328484029825 5 22.922799944476786 35.44162707875388 21.351575885522735 20.2839970912466 6 84.83429014193639 2.610419718198976 9.168995672089848 3.386294467774783 7 84.58091368833661 2.7515066886825874 6.734054168280915 5.933525454699895 8 73.35714478092156 4.913182826753073 13.968231606381853 7.7614407859435115 9 47.79719939255948 18.31188714699771 17.325935762957315 16.564977697485503 10 40.351909439153395 19.726900375196042 27.115216882371584 12.805973303278979 11 38.69180680407972 16.46408290361543 25.528868963145428 19.315241329159424 12 19.148464513830046 33.324700992995375 30.43521497635084 17.09161951682374 13 13.05603493818899 36.67515398368695 30.188468160130604 20.08034291799346 14 11.773614457581715 23.779887751952117 46.1973850224061 18.249112768060062 15 12.504324802509318 17.387674261054404 49.1651836305966 20.942817305839675 16 13.306718101603337 21.77442244463735 30.07327821066087 34.845581243098444 17 16.694462802554895 22.961956240249773 35.60032402352692 24.743256933668405 18 21.812957211906 27.91512406744827 29.21246123215954 21.059457488486185 19 24.51080527304783 22.299821206966918 26.91301294229522 26.276360577690028 20 17.287815348024886 31.3059764109215 28.979595219202746 22.42661302185087 21 18.876442205100265 23.805163244461664 26.933523382938212 30.38487116749986 22 16.569328397015834 30.40890360300074 23.66780544500405 29.353962554979375 23 16.497645442849418 22.541181442816267 38.88344475958242 22.077728354751898 24 17.933790640195078 21.864336901597536 35.13894269714366 25.062929761063724 25 14.79424298864053 29.712170149643345 30.426513577290176 25.067073284425945 26 16.66317920117013 29.35914195918215 26.975787321232865 27.001891518414855 27 18.62202987065992 26.587124829856574 34.64317012685397 20.14767517262954 28 14.466490290688883 24.53856687957471 31.73628131208811 29.258661517648303 29 17.502449858187912 26.981795430108086 27.77797344415877 27.73778126754523 30 23.900878634128958 24.47434226746029 22.037536178138357 29.587242920272395 31 24.96949330924565 23.355383783492616 25.787631997116105 25.887490910145623 32 21.275127879489766 27.642065877877936 21.99030001180904 29.092506230823258 33 15.178347604318379 24.505833045013166 26.637468638707553 33.6783507119609 34 18.644404896815907 24.616465118784454 28.181138267302835 28.557991717096797 35 23.66221168846505 22.460382737252967 25.35981320996683 28.51759236431515 36 20.715752225589988 29.422537866624126 24.81991211586949 25.041797791916398 37 19.92247467789285 25.42030865105525 26.375805138383324 28.281411532668578 38 18.696820467348 27.889434222602503 24.976744475129536 28.437000834919957 39 23.607724356251854 24.024769982659354 25.452213780944348 26.915291880144444 40 14.905703767084264 22.088501515493668 30.513320391728698 32.492474325693365 41 20.834671346085717 24.009438946219138 24.463776282886627 30.692113424808515 42 20.385927765957227 21.937055736604506 28.90666920802766 28.7703472894106 43 21.75701964651602 26.88918768296245 27.35367665186738 24.00011601865414 44 16.199518936937647 30.22555269422248 25.867187645670743 27.707740723169135 45 21.096127670241838 25.378873417433045 25.875474692395183 27.649524219929933 46 23.4019984213176 22.277446180810927 27.38744636726948 26.933109030601994 47 19.898856594728194 20.291248257130487 31.351347991737814 28.4585471564035 48 19.915016335840853 19.113658917587394 27.570175747543406 33.401148999028344 49 20.407474087440775 22.98557432341443 30.731891249085834 25.875060340058965 50 18.770160830859307 23.638800781468504 27.933148394073932 29.657889993598257 51 18.441993780571433 20.642826214414903 30.25455735775802 30.660622647255643 52 19.593686099100648 18.609599300573258 35.554538090374386 26.242176509951708 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 93.0 1 149.5 2 206.0 3 1136.0 4 2066.0 5 1404.5 6 743.0 7 825.5 8 908.0 9 955.5 10 1003.0 11 1008.0 12 1013.0 13 960.5 14 857.0 15 806.0 16 835.0 17 864.0 18 803.5 19 743.0 20 820.0 21 897.0 22 833.5 23 770.0 24 920.5 25 1071.0 26 1368.5 27 1666.0 28 2216.0 29 2766.0 30 3079.5 31 3393.0 32 3905.5 33 4418.0 34 5383.0 35 6348.0 36 7842.0 37 9336.0 38 9635.0 39 11704.5 40 13475.0 41 18746.0 42 24017.0 43 30187.0 44 36357.0 45 39982.0 46 43607.0 47 45714.5 48 47822.0 49 53891.5 50 59961.0 51 61319.0 52 62677.0 53 53999.5 54 45322.0 55 36993.0 56 28664.0 57 24065.5 58 19467.0 59 17066.5 60 14666.0 61 13418.0 62 12170.0 63 10974.0 64 7669.0 65 5560.0 66 4409.5 67 3259.0 68 2688.0 69 2117.0 70 1822.0 71 1527.0 72 1274.0 73 1021.0 74 799.5 75 578.0 76 448.0 77 318.0 78 290.0 79 262.0 80 154.0 81 46.0 82 40.5 83 35.0 84 21.5 85 8.0 86 10.5 87 13.0 88 6.5 89 1.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 482681.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.199571472343866 #Duplication Level Percentage of deduplicated Percentage of total 1 70.17175349117565 21.191568848964547 2 12.254668981617467 7.401715035605442 3 4.447700004156455 4.02955902489201 4 2.1456146419562163 2.59186570927457 5 1.2174692135704148 1.8383524265299014 6 0.8356659562309326 1.5142052263320378 7 0.5883182555406046 1.2436871444678206 8 0.49621904931083183 1.1988482116480794 9 0.4444582042343648 1.2080202574720775 >10 7.025242752282895 45.149627812574 >50 0.28979622075136363 5.8263239077227515 >100 0.07485257834573135 3.9930248636468235 >500 0.005493767218035329 1.115948207711829 >1k 0.0027468836090176643 1.6972533231580766 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 2596 0.5378293324162335 No Hit GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 2191 0.45392298433126643 No Hit CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT 2187 0.4530942796588223 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1210 0.2506831634143461 No Hit TCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 918 0.1901877223259254 No Hit ACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 875 0.18127914709715112 No Hit GCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 663 0.1373577994576128 No Hit CGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 634 0.13134969058239293 No Hit ACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 605 0.12534158170717305 No Hit AGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 596 0.1234769961941738 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCG 587 0.12161241068117452 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT 503 0.10420961255984801 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4622100310557076 0.0 2 0.0 0.0 0.0 1.7918666779922972 0.0 3 0.0 0.0 0.0 2.845979021341217 0.0 4 0.0 0.0 0.0 3.5012772410764046 0.0 5 0.0 0.0 0.0 7.048340415305346 0.0 6 0.0 0.0 0.0 7.71296156260553 0.0 7 0.0 0.0 0.0 10.897673618808282 0.0 8 0.0 0.0 0.0 14.221815236149755 0.0 9 0.0 0.0 0.0 17.21178169432814 0.0 10 0.0 0.0 0.0 18.544753159954503 0.0 11 0.0 0.0 0.0 19.926825377423185 0.0 12 0.0 0.0 0.0 21.156415935162148 0.0 13 0.0 0.0 0.0 21.584649074647643 0.0 14 0.0 0.0 0.0 21.910951539422516 0.0 15 0.0 0.0 0.0 23.074452899534062 0.0 16 0.0 0.0 0.0 24.268409156357926 0.0 17 0.0 0.0 0.0 26.05696101566045 0.0 18 0.0 0.0 0.0 26.773376204988388 0.0 19 0.0 0.0 0.0 27.695724505418692 0.0 20 0.0 0.0 0.0 28.76309612352672 0.0 21 0.0 0.0 0.0 29.673013853870362 0.0 22 0.0 0.0 0.0 30.739763943474053 0.0 23 0.0 0.0 0.0 31.419716127214453 0.0 24 0.0 0.0 0.0 31.989036237183566 0.0 25 0.0 0.0 0.0 32.60414228030521 0.0 26 0.0 0.0 0.0 33.14715101692422 0.0 27 0.0 0.0 0.0 33.687259287189676 0.0 28 0.0 0.0 0.0 34.21866615839447 0.0 29 0.0 0.0 0.0 34.958285078550844 0.0 30 0.0 0.0 0.0 35.67138544918901 0.0 31 0.0 0.0 0.0 36.24547061102467 0.0 32 0.0 0.0 0.0 36.79655921820001 0.0 33 0.0 0.0 0.0 37.28611650344637 0.0 34 0.0 0.0 0.0 38.014962262860976 0.0 35 0.0 0.0 0.0 38.528137631272 0.0 36 0.0 0.0 0.0 39.09372857021511 0.0 37 0.0 0.0 0.0 39.60856134797102 0.0 38 2.0717616811102984E-4 0.0 0.0 40.12733047292104 0.0 39 2.0717616811102984E-4 0.0 0.0 40.69105682635115 0.0 40 2.0717616811102984E-4 0.0 0.0 41.246703309224934 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGATT 20 6.3077966E-4 46.000004 14 AGTCCGT 20 6.3077966E-4 46.000004 36 CTATCGA 20 6.3077966E-4 46.000004 17 ACGGGTA 40 5.5988494E-9 46.000004 4 TCGGCTT 20 6.3077966E-4 46.000004 14 TCGTGCA 20 6.3077966E-4 46.000004 22 AGTTCGG 20 6.3077966E-4 46.000004 1 GCTAGAT 20 6.3077966E-4 46.000004 13 TATCGAA 20 6.3077966E-4 46.000004 18 ATACCGG 20 6.3077966E-4 46.000004 1 CATGCGG 100 0.0 46.0 1 ACTCTAA 30 1.8591436E-6 46.0 33 CAACCGG 25 3.41419E-5 46.0 1 CCTACGG 25 3.41419E-5 46.0 1 TCGATCA 30 1.8591436E-6 46.0 16 ACGGGCG 45 3.092282E-10 46.0 4 AACGGCT 30 1.8591436E-6 46.0 3 ACTACGG 30 1.8591436E-6 46.0 1 CGCAGAT 30 1.8591436E-6 46.0 27 TTAGTGG 30 1.8591436E-6 46.0 1 >>END_MODULE