##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544976_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 526186 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.94572641613422 34.0 33.0 34.0 31.0 34.0 2 33.23756618382093 34.0 33.0 34.0 31.0 34.0 3 33.282683309704176 34.0 34.0 34.0 31.0 34.0 4 36.56954384951329 37.0 37.0 37.0 35.0 37.0 5 36.55887081754361 37.0 37.0 37.0 35.0 37.0 6 36.66948949610974 37.0 37.0 37.0 35.0 37.0 7 36.51257350062525 37.0 37.0 37.0 35.0 37.0 8 36.54966494737602 37.0 37.0 37.0 35.0 37.0 9 38.34160163896417 39.0 39.0 39.0 37.0 39.0 10 38.12080519055999 39.0 39.0 39.0 35.0 39.0 11 37.2281740677251 39.0 35.0 39.0 35.0 39.0 12 37.10905839379991 39.0 35.0 39.0 35.0 39.0 13 37.08931062399988 39.0 35.0 39.0 35.0 39.0 14 38.32031068861581 40.0 35.0 41.0 35.0 41.0 15 38.39364977403428 40.0 35.0 41.0 35.0 41.0 16 38.42239436244978 40.0 35.0 41.0 35.0 41.0 17 38.514082472737776 40.0 36.0 41.0 35.0 41.0 18 38.49594249942036 40.0 36.0 41.0 35.0 41.0 19 38.37860186321947 40.0 35.0 41.0 35.0 41.0 20 38.28409915885257 40.0 35.0 41.0 35.0 41.0 21 38.23564861094746 40.0 35.0 41.0 35.0 41.0 22 38.208441501674315 40.0 35.0 41.0 35.0 41.0 23 38.20880449118753 40.0 35.0 41.0 35.0 41.0 24 38.152145819159 40.0 35.0 41.0 35.0 41.0 25 38.118220553188415 40.0 35.0 41.0 35.0 41.0 26 38.07511412314277 40.0 35.0 41.0 35.0 41.0 27 38.07932556168351 40.0 35.0 41.0 35.0 41.0 28 38.102955988946874 40.0 35.0 41.0 35.0 41.0 29 38.11623456344334 40.0 35.0 41.0 35.0 41.0 30 37.9953248471073 40.0 35.0 41.0 35.0 41.0 31 37.9289851877473 40.0 35.0 41.0 35.0 41.0 32 37.82513597853231 40.0 35.0 41.0 35.0 41.0 33 37.764233559995894 40.0 35.0 41.0 35.0 41.0 34 37.67476519709761 40.0 35.0 41.0 35.0 41.0 35 37.61301897047812 40.0 35.0 41.0 35.0 41.0 36 37.55785406681288 40.0 35.0 41.0 35.0 41.0 37 37.513436313394884 40.0 35.0 41.0 35.0 41.0 38 37.4715290790709 40.0 35.0 41.0 35.0 41.0 39 37.37060469111683 39.0 35.0 41.0 34.0 41.0 40 37.29026047823393 39.0 35.0 41.0 34.0 41.0 41 37.278285625235185 39.0 35.0 41.0 34.0 41.0 42 37.150095213479645 39.0 35.0 41.0 34.0 41.0 43 37.06529250113078 38.0 35.0 41.0 34.0 41.0 44 36.973969280824655 38.0 35.0 41.0 34.0 41.0 45 36.95015830903901 38.0 35.0 41.0 34.0 41.0 46 36.94394567700395 38.0 35.0 41.0 34.0 41.0 47 36.880954643415066 38.0 35.0 41.0 34.0 41.0 48 36.892002067709896 38.0 35.0 41.0 34.0 41.0 49 36.73901624140513 37.0 35.0 41.0 34.0 41.0 50 36.51318925246966 37.0 35.0 40.0 34.0 41.0 51 36.410130638215385 37.0 35.0 40.0 34.0 41.0 52 36.15865682477299 36.0 35.0 39.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 1.0 14 7.0 15 15.0 16 11.0 17 33.0 18 63.0 19 89.0 20 169.0 21 244.0 22 382.0 23 624.0 24 1077.0 25 1823.0 26 2555.0 27 3001.0 28 2942.0 29 3146.0 30 3693.0 31 4473.0 32 6101.0 33 8811.0 34 27666.0 35 131640.0 36 17326.0 37 24296.0 38 48382.0 39 235922.0 40 1690.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.83265993393971 22.87556111337056 24.797124971017855 20.49465398167188 2 26.20157130748443 25.179879358249746 26.76886120117221 21.84968813309362 3 26.447301904649688 25.001805445222793 26.06986882965339 22.48102382047413 4 26.164512168700803 27.4294641058485 22.80277316386221 23.60325056158849 5 22.655866936786612 36.62526178955731 21.422082685590265 19.296788588065816 6 88.18668683697399 2.6251173539394816 6.702762901331469 2.4854329077550523 7 87.761932092454 2.3187618066615228 5.142098041377004 4.777208059507474 8 78.1413796642252 4.352453314987477 11.032600639317655 6.47356638146967 9 52.55137917010335 19.7561318621172 13.6162877765657 14.076201191213752 10 45.72698627481537 19.193403093202786 24.946311760480132 10.133298871501713 11 44.69180099812613 16.33167739164478 22.401394183805724 16.575127426423357 12 19.676502225448797 37.81077413690216 25.9393066330157 16.57341700463334 13 13.409706833705194 40.3214832777763 27.35572592201237 18.913083966506143 14 12.144754896557492 22.65738731171107 49.13908769902658 16.05877009270486 15 13.007377619320925 16.95256050141965 50.91165481407715 19.128407065182273 16 13.252728122755073 20.10904889145663 28.931974624942512 37.706248360845784 17 18.252481061829847 22.234533035846642 36.085908785106405 23.427077117217106 18 25.211237091066657 27.280467363251777 26.661104628401368 20.8471909172802 19 28.822697677247213 22.731125495547204 25.283454899978334 23.162721927227253 20 18.617941184296047 32.87145610107453 26.650081910199052 21.860520804430372 21 19.42982139395575 24.943651104362335 24.459791784654094 31.166735717027823 22 16.66615987502518 33.082408121842846 22.674301482745644 27.577130520386326 23 17.324292170449233 22.406145355444654 39.6148890316352 20.654673442470912 24 16.275993660036566 22.681333216771254 36.89455819805164 24.14811492514054 25 14.954217710087308 33.23254514563291 29.366801853337034 22.446435290942745 26 17.810622099409716 31.84045185542755 26.71203718837065 23.636888856792083 27 18.5424925786699 27.830082898442754 37.69940667368573 15.928017849201614 28 16.083476185227276 25.72455367493624 32.3300125811025 25.861957558733984 29 20.637759271436337 29.699003774330752 26.5326329472848 23.130604006948115 30 28.28486504772077 26.571402507858437 21.25123055345448 23.89250189096631 31 32.158590308370044 26.8790883831953 21.15088580844036 19.8114354999943 32 26.486641605819994 29.581934905147612 21.173121291710537 22.758302197321857 33 20.965590114522243 30.31646604052559 23.95559745033125 24.762346394620913 34 19.928314322311884 28.084745698289197 27.1489549322863 24.837985047112618 35 29.793076972781492 26.433428483464024 22.298388782673808 21.47510576108068 36 24.21748203106886 31.006146115632117 24.066014679219897 20.710357174079128 37 22.520553568509992 32.05235411052366 24.18859490750419 21.23849741346216 38 20.73715378212267 32.785935011573855 23.923859623783226 22.55305158252025 39 26.888400679607592 26.502225448795674 24.077607538018874 22.53176633357786 40 16.447415932769022 23.559729829375925 29.154329457644256 30.8385247802108 41 22.50782042851767 26.182756667794276 22.834130896679124 28.475292007008928 42 21.60832861383617 25.27642316595272 26.254214289243727 26.861033930967377 43 23.026268277757296 29.378394712136014 26.854192243807322 20.741144766299367 44 17.132534883102174 33.51647516277514 24.779260565655488 24.571729388467194 45 23.48979258285093 30.54623270098406 24.26803449730704 21.69594021885797 46 23.794627755204434 25.056728989368775 26.29317389668292 24.855469358743868 47 22.54716012968798 21.36335820413314 31.181939466272386 24.907542199906494 48 20.854032604440256 21.290000114028118 28.43519211837639 29.420775163155234 49 20.976992926455665 27.446378276883078 28.847023676038514 22.729605120622747 50 19.210507311102916 29.10643764752388 25.836111185018222 25.846943856354976 51 19.940287274841975 22.243845332258935 31.624558616154747 26.191308776744343 52 23.880528938436218 20.01155484942587 31.925592851197106 24.182323360940806 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 83.0 1 132.5 2 182.0 3 979.0 4 1776.0 5 1226.5 6 677.0 7 796.5 8 916.0 9 975.0 10 1034.0 11 946.0 12 858.0 13 839.5 14 765.0 15 709.0 16 645.0 17 581.0 18 669.0 19 757.0 20 668.5 21 580.0 22 710.0 23 840.0 24 1140.5 25 1441.0 26 1777.5 27 2114.0 28 3075.0 29 4036.0 30 4119.0 31 4202.0 32 5446.0 33 6690.0 34 7237.0 35 7784.0 36 8320.5 37 8857.0 38 10710.0 39 14296.0 40 16029.0 41 23535.0 42 31041.0 43 41415.0 44 51789.0 45 57363.0 46 62937.0 47 63780.0 48 64623.0 49 63512.0 50 62401.0 51 54877.5 52 47354.0 53 40894.5 54 34435.0 55 28604.5 56 22774.0 57 20155.0 58 17536.0 59 16540.0 60 15544.0 61 15638.0 62 15732.0 63 13424.5 64 8454.0 65 5791.0 66 4710.0 67 3629.0 68 2861.0 69 2093.0 70 1710.5 71 1328.0 72 1120.0 73 912.0 74 830.5 75 749.0 76 656.5 77 564.0 78 389.5 79 215.0 80 136.0 81 57.0 82 42.0 83 27.0 84 15.0 85 3.0 86 3.0 87 3.0 88 2.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 526186.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.981353097880167 #Duplication Level Percentage of deduplicated Percentage of total 1 70.72757383679462 17.668704957733574 2 11.585860055595884 5.788609219829326 3 4.242909820262121 3.1798088514729392 4 1.8603332994908164 1.8589457213729812 5 1.0980845324451962 1.3715818718167052 6 0.7527608733080469 1.1282991104626172 7 0.5481780213001283 0.9585960097417046 8 0.4445318368574924 0.8884005423829022 9 0.37143109110636646 0.8350966114613134 >10 7.539495059535646 48.37844857025922 >50 0.6964095863846101 11.26353348439244 >100 0.1255820565611592 4.901652485274091 >500 0.003805516865489673 0.5626062724564017 >1k 0.0030444134923917386 1.2157162913437758 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 2190 0.41620263556993153 No Hit CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCTT 1654 0.3143375156313547 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 1547 0.29400250101675074 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1003 0.19061700615371752 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 695 0.13208257156214723 No Hit GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA 615 0.11687882231758352 No Hit TCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 564 0.10718643217417416 No Hit ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 546 0.1037655885941473 No Hit ACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 539 0.102435260535248 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3261204212958916 0.0 2 0.0 0.0 0.0 1.262671374761016 0.0 3 1.9004686555704637E-4 0.0 0.0 1.9409486379341145 0.0 4 1.9004686555704637E-4 0.0 0.0 2.381857366026462 0.0 5 1.9004686555704637E-4 0.0 0.0 4.8990281003295415 0.0 6 1.9004686555704637E-4 0.0 0.0 5.401702059727929 0.0 7 1.9004686555704637E-4 0.0 0.0 8.149399641951705 0.0 8 1.9004686555704637E-4 0.0 0.0 10.888355068359857 0.0 9 1.9004686555704637E-4 0.0 0.0 13.713971865462023 0.0 10 1.9004686555704637E-4 0.0 0.0 14.729392268133322 0.0 11 1.9004686555704637E-4 0.0 0.0 15.767618294671466 0.0 12 1.9004686555704637E-4 0.0 0.0 16.629860923703784 0.0 13 1.9004686555704637E-4 0.0 0.0 16.929184736956135 0.0 14 1.9004686555704637E-4 0.0 0.0 17.157621069355702 0.0 15 1.9004686555704637E-4 0.0 0.0 18.031836650918116 0.0 16 1.9004686555704637E-4 0.0 0.0 18.919355513069522 0.0 17 1.9004686555704637E-4 0.0 0.0 20.319240724762725 0.0 18 1.9004686555704637E-4 0.0 0.0 20.828376277590053 0.0 19 1.9004686555704637E-4 0.0 0.0 21.547513616857916 0.0 20 1.9004686555704637E-4 0.0 0.0 22.31929393788508 0.0 21 1.9004686555704637E-4 0.0 0.0 22.932005032441 0.0 22 1.9004686555704637E-4 0.0 0.0 23.680219542139092 0.0 23 1.9004686555704637E-4 0.0 0.0 24.163888814981775 0.0 24 1.9004686555704637E-4 0.0 0.0 24.55652563922263 0.0 25 1.9004686555704637E-4 0.0 0.0 24.978999821355945 0.0 26 1.9004686555704637E-4 0.0 0.0 25.34217938143546 0.0 27 1.9004686555704637E-4 0.0 0.0 25.74013751791192 0.0 28 1.9004686555704637E-4 0.0 0.0 26.110348812017044 0.0 29 1.9004686555704637E-4 0.0 0.0 26.684100299133767 0.0 30 1.9004686555704637E-4 0.0 0.0 27.202358101507834 0.0 31 1.9004686555704637E-4 0.0 0.0 27.622171627523347 0.0 32 1.9004686555704637E-4 0.0 0.0 28.04027473174885 0.0 33 1.9004686555704637E-4 0.0 0.0 28.431011087334138 0.0 34 1.9004686555704637E-4 0.0 0.0 29.001151684005276 0.0 35 1.9004686555704637E-4 0.0 0.0 29.42419600673526 0.0 36 1.9004686555704637E-4 0.0 0.0 29.85294173543196 0.0 37 1.9004686555704637E-4 0.0 0.0 30.2801670892042 0.0 38 1.9004686555704637E-4 0.0 0.0 30.65569969554492 0.0 39 1.9004686555704637E-4 0.0 0.0 31.095088048712814 0.0 40 1.9004686555704637E-4 0.0 0.0 31.53656691740183 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTTG 35 1.0181611E-7 46.000004 5 CGAATAT 35 1.0181611E-7 46.000004 14 CTACCGG 35 1.0181611E-7 46.000004 1 CACACGG 35 1.0181611E-7 46.000004 1 CGGGTCA 25 3.414612E-5 46.0 5 CGGGTAC 45 3.092282E-10 46.0 5 GTACCGG 20 6.3083187E-4 46.0 1 ACACGTA 20 6.3083187E-4 46.0 28 CGTATTC 20 6.3083187E-4 46.0 31 GTCGAAT 20 6.3083187E-4 46.0 29 CATGCGG 60 0.0 46.0 1 GACACCG 20 6.3083187E-4 46.0 8 CGTTGAT 80 0.0 46.0 24 CTCCCGA 20 6.3083187E-4 46.0 38 GAATCCG 30 1.8594656E-6 46.0 29 ATTCGCA 20 6.3083187E-4 46.0 10 ATTCGAA 20 6.3083187E-4 46.0 41 AGGGTAC 45 3.092282E-10 46.0 5 TGACGTA 25 3.414612E-5 46.0 13 TGCGGGC 85 0.0 46.0 3 >>END_MODULE