##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544975_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 329677 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.945816662976185 34.0 33.0 34.0 31.0 34.0 2 33.271062282173155 34.0 34.0 34.0 31.0 34.0 3 33.387091001192076 34.0 34.0 34.0 31.0 34.0 4 36.621023001301275 37.0 37.0 37.0 35.0 37.0 5 36.613740115325 37.0 37.0 37.0 35.0 37.0 6 36.44355232545795 37.0 37.0 37.0 35.0 37.0 7 36.277565617255675 37.0 37.0 37.0 35.0 37.0 8 36.407332024982026 37.0 37.0 37.0 35.0 37.0 9 38.28771797850624 39.0 39.0 39.0 37.0 39.0 10 38.12812844086788 39.0 39.0 39.0 35.0 39.0 11 37.32463896480495 39.0 35.0 39.0 35.0 39.0 12 37.2656114924608 39.0 35.0 39.0 35.0 39.0 13 37.264276852798346 39.0 35.0 39.0 35.0 39.0 14 38.43993363200951 40.0 35.0 41.0 35.0 41.0 15 38.48535991288443 41.0 35.0 41.0 35.0 41.0 16 38.53891839588446 41.0 35.0 41.0 35.0 41.0 17 38.6583534793146 41.0 36.0 41.0 35.0 41.0 18 38.646902877665106 40.0 36.0 41.0 35.0 41.0 19 38.56525326304231 40.0 35.0 41.0 35.0 41.0 20 38.47210451441866 40.0 35.0 41.0 35.0 41.0 21 38.43351219526991 40.0 35.0 41.0 35.0 41.0 22 38.39829894108476 40.0 35.0 41.0 35.0 41.0 23 38.36982258392305 40.0 35.0 41.0 35.0 41.0 24 38.340126851433375 40.0 35.0 41.0 35.0 41.0 25 38.29940517536862 40.0 35.0 41.0 35.0 41.0 26 38.24784865186228 40.0 35.0 41.0 35.0 41.0 27 38.335079486891715 40.0 35.0 41.0 35.0 41.0 28 38.34565347294473 40.0 35.0 41.0 35.0 41.0 29 38.37651094859514 40.0 36.0 41.0 35.0 41.0 30 38.23741722959139 40.0 35.0 41.0 35.0 41.0 31 38.19033478222624 40.0 35.0 41.0 35.0 41.0 32 38.09622448639122 40.0 35.0 41.0 35.0 41.0 33 38.050042920798234 40.0 35.0 41.0 35.0 41.0 34 37.955753661917576 40.0 35.0 41.0 35.0 41.0 35 37.91263266773235 40.0 35.0 41.0 35.0 41.0 36 37.88954340157184 40.0 35.0 41.0 35.0 41.0 37 37.82843207139109 40.0 35.0 41.0 35.0 41.0 38 37.803710904916024 40.0 35.0 41.0 35.0 41.0 39 37.73551385143641 40.0 35.0 41.0 35.0 41.0 40 37.676983835693726 40.0 35.0 41.0 35.0 41.0 41 37.66104399154324 40.0 35.0 41.0 35.0 41.0 42 37.5660297806641 40.0 35.0 41.0 35.0 41.0 43 37.49993781792482 39.0 35.0 41.0 35.0 41.0 44 37.36016767927396 39.0 35.0 41.0 35.0 41.0 45 37.36287639113435 39.0 35.0 41.0 35.0 41.0 46 37.28838529833747 39.0 35.0 41.0 35.0 41.0 47 37.19565514124431 39.0 35.0 41.0 35.0 41.0 48 37.14534529251358 38.0 35.0 41.0 35.0 41.0 49 36.99312660573835 38.0 35.0 41.0 35.0 41.0 50 36.72928957737422 37.0 35.0 40.0 34.0 41.0 51 36.61222954588885 37.0 35.0 40.0 34.0 41.0 52 36.11602568574696 36.0 35.0 39.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 4.0 15 4.0 16 10.0 17 15.0 18 23.0 19 49.0 20 91.0 21 122.0 22 192.0 23 318.0 24 558.0 25 1042.0 26 1425.0 27 1643.0 28 1554.0 29 1577.0 30 1828.0 31 2187.0 32 2980.0 33 4441.0 34 15722.0 35 78951.0 36 10230.0 37 14908.0 38 31838.0 39 157483.0 40 480.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.01732908270823 22.311838557133193 24.42481580456022 22.24601655559836 2 25.79494474895125 25.388182979097724 26.781668117581752 22.035204154369275 3 26.50230377005372 25.078789239164394 26.119504848685228 22.299402142096657 4 26.053682847150395 27.03767627101678 23.073493146322004 23.835147735510816 5 22.790792199637828 36.03041765121619 21.55382389429654 19.624966254849443 6 86.70850559790341 2.6246902271010715 7.5219078067320435 3.144896368263482 7 86.16130333629583 2.1554430548688566 5.931259990839519 5.751993617995796 8 75.77174021845624 4.403097577325686 12.539849610376216 7.2853125938418515 9 51.13823530303904 19.144495976364745 14.48630022719207 15.230968493404152 10 44.20660221974842 18.857851776132396 26.57297900672476 10.362566997394419 11 42.95386090021445 16.0933277116693 23.192700734355142 17.760110653761103 12 19.19060171015873 35.920309879063446 27.47962399560782 17.40946441517 13 13.386435814448689 38.66966758372589 28.085975060437946 19.85792154138748 14 12.20194311401766 22.121652405233 48.55601088337979 17.120393597369546 15 12.92780509407693 16.87621520457903 50.40479014307944 19.791189558264605 16 13.108588102900717 20.66992844511446 29.585018063134523 36.6364653888503 17 17.57174446503699 22.399803443976985 36.46387221431887 23.564579876667164 18 24.457878468925646 27.926121628139057 27.016443367295867 20.59955653563943 19 27.933704808039383 22.99553805694665 25.27534526218086 23.795411872833107 20 18.116823436272472 33.5306982288725 26.322734070013983 22.029744264841042 21 18.9461199901722 25.257752284812103 24.40388622803532 31.39224149698038 22 16.402721451602627 33.575893981078444 22.64610512713959 27.37527944017933 23 16.768534049994386 22.974608480421747 39.04033341725386 21.21652405233001 24 16.666616112133998 22.8969567182424 35.85388122313658 24.582545946487016 25 15.057465337284675 32.66136248509905 29.710595522283935 22.570576655332342 26 18.440170227222403 30.276907397240326 26.530209872086925 24.752712503450347 27 19.153292465049123 27.470827506923445 36.84272788213919 16.53315214588825 28 16.74305456552929 25.774925154014383 31.640969797711094 25.84105048274523 29 21.613579351911113 28.80061393424473 25.786754914658893 23.799051799185264 30 28.057158976816705 26.49350728136934 20.507648395247468 24.941685346566487 31 32.91373071218192 26.557812646924113 20.138499197699566 20.389957443194398 32 26.26661853875157 29.32264003858322 20.83402845815753 23.576712964507685 33 21.26930298443628 30.308453425625686 23.728073235318206 24.694170354619825 34 20.268929891985184 28.29739411605905 26.60209841754202 24.831577574413743 35 29.39270862086224 26.933331715588288 21.902346842515552 21.77161282103392 36 25.051793118719228 30.5432286753398 22.816271684102926 21.58870652183804 37 23.291888727451415 31.955520099976642 23.86214385595598 20.89044731661596 38 21.117942713625762 33.1105900623944 22.95216226791678 22.819304956063053 39 26.846276810332537 26.831413777727896 23.861840528759966 22.460468883179598 40 16.717878408260205 23.49208467682004 28.535505964929307 31.254530949990446 41 22.62426556902665 26.383096182020584 22.4419659242228 28.550672324729966 42 21.39488044358569 25.023280362294003 26.48956402782117 27.092275166299135 43 23.82240799327827 28.696572706012248 26.562665882060323 20.918353418649165 44 17.414317650306206 31.76806389284057 25.976031084971048 24.841587371882177 45 23.376820342335073 29.888951913539618 24.451205270613357 22.283022473511952 46 24.130588424427547 23.724129981770037 26.67338030860509 25.47190128519733 47 22.329734861697965 20.37206113862963 31.358268851026917 25.939935148645493 48 20.655975394097858 20.494301998622895 28.215192445939515 30.634530161339736 49 20.868304431307006 26.05064957519026 29.259851309008518 23.821194684494216 50 19.54670783827807 27.780524574052784 26.576315605880907 26.09645198178824 51 19.70777457936101 21.34725807381164 31.799003266833903 27.145964079993444 52 23.8114882142218 19.23003424564043 32.65347597800271 24.305001562135057 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 34.0 1 90.0 2 146.0 3 654.0 4 1162.0 5 794.5 6 427.0 7 507.5 8 588.0 9 610.0 10 632.0 11 607.5 12 583.0 13 552.0 14 501.0 15 481.0 16 437.5 17 394.0 18 442.0 19 490.0 20 423.0 21 356.0 22 421.0 23 486.0 24 677.5 25 869.0 26 1005.0 27 1141.0 28 1596.5 29 2052.0 30 2168.5 31 2285.0 32 2945.0 33 3605.0 34 3908.5 35 4212.0 36 4532.5 37 4853.0 38 6194.0 39 8288.0 40 9041.0 41 13448.5 42 17856.0 43 24078.0 44 30300.0 45 34200.5 46 38101.0 47 40409.5 48 42718.0 49 42182.5 50 41647.0 51 36988.5 52 32330.0 53 27575.0 54 22820.0 55 18944.0 56 15068.0 57 13018.0 58 10968.0 59 10366.5 60 9765.0 61 9654.0 62 9543.0 63 8333.0 64 5338.0 65 3553.0 66 2878.5 67 2204.0 68 1768.5 69 1333.0 70 1090.0 71 847.0 72 703.5 73 560.0 74 526.5 75 493.0 76 419.0 77 345.0 78 248.0 79 151.0 80 96.5 81 42.0 82 27.5 83 13.0 84 7.5 85 2.0 86 1.0 87 0.0 88 0.0 89 0.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 329677.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.9954197593402 #Duplication Level Percentage of deduplicated Percentage of total 1 71.56378933743225 21.46585900745275 2 10.358182994903325 6.213960937523697 3 3.6253134859639187 3.262283993120539 4 1.754510152900251 2.1050907403306875 5 1.1012458538953158 1.6516165822911515 6 0.8595582881643881 1.5469686996666434 7 0.7604562737642585 1.5967143598127862 8 0.6512418089151363 1.562741713859323 9 0.5824771458619853 1.572448184131741 >10 8.43985114472939 49.2827828450271 >50 0.23460885041663293 4.589037148481696 >100 0.06269719278375535 3.2246714208149188 >500 0.0030337351346978398 0.6203041158467226 >1k 0.0030337351346978398 1.3055202516402418 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 1802 0.5465956072155473 No Hit CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCTT 1404 0.4258713832023466 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 1098 0.3330532612223479 No Hit TGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCTTG 786 0.2384151760662709 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 651 0.19746600460450683 No Hit ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 608 0.18442293517594494 No Hit TCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 492 0.14923698043842912 No Hit ACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 437 0.13255398465771043 No Hit CGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 366 0.11101775374078265 No Hit GCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 356 0.10798448178065197 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4337578902986863 0.0 2 0.0 0.0 0.0 1.5860979079523292 0.0 3 0.0 0.0 0.0 2.4396606375331005 0.0 4 0.0 0.0 0.0 2.9814030096124386 0.0 5 0.0 0.0 0.0 5.887580874613637 0.0 6 0.0 0.0 0.0 6.462992565450426 0.0 7 0.0 0.0 0.0 9.764405766856651 0.0 8 0.0 0.0 0.0 12.969967574322746 0.0 9 0.0 0.0 0.0 16.368445478453154 0.0 10 0.0 0.0 0.0 17.589944096797776 0.0 11 0.0 0.0 0.0 18.76139372780024 0.0 12 0.0 0.0 0.0 19.803019318909115 0.0 13 3.033271960130673E-4 0.0 0.0 20.162158718988586 0.0 14 3.033271960130673E-4 0.0 0.0 20.437276485772436 0.0 15 3.033271960130673E-4 0.0 0.0 21.429763071127194 0.0 16 3.033271960130673E-4 0.0 0.0 22.39919678958496 0.0 17 3.033271960130673E-4 0.0 0.0 23.843034242607157 0.0 18 3.033271960130673E-4 0.0 0.0 24.411166080739633 0.0 19 3.033271960130673E-4 0.0 0.0 25.152801074991583 0.0 20 3.033271960130673E-4 0.0 0.0 25.985130900851438 0.0 21 3.033271960130673E-4 0.0 0.0 26.64881080572803 0.0 22 6.066543920261346E-4 0.0 0.0 27.455964474318804 0.0 23 6.066543920261346E-4 0.0 0.0 28.028949547587487 0.0 24 6.066543920261346E-4 0.0 0.0 28.47211058096258 0.0 25 6.066543920261346E-4 0.0 0.0 28.915878268729696 0.0 26 6.066543920261346E-4 0.0 0.0 29.318393457839036 0.0 27 6.066543920261346E-4 0.0 0.0 29.749421403373606 0.0 28 6.066543920261346E-4 0.0 0.0 30.148903320522816 0.0 29 6.066543920261346E-4 0.0 0.0 30.701565471658622 0.0 30 6.066543920261346E-4 0.0 0.0 31.244521152522015 0.0 31 6.066543920261346E-4 0.0 0.0 31.688288840289133 0.0 32 9.09981588039202E-4 0.0 0.0 32.111733605923376 0.0 33 9.09981588039202E-4 0.0 0.0 32.49574583607592 0.0 34 9.09981588039202E-4 0.0 0.0 33.06327101981636 0.0 35 9.09981588039202E-4 0.0 0.0 33.489445730214726 0.0 36 9.09981588039202E-4 0.0 0.0 33.94352654264629 0.0 37 9.09981588039202E-4 0.0 0.0 34.375161142572885 0.0 38 9.09981588039202E-4 0.0 0.0 34.75826339113738 0.0 39 9.09981588039202E-4 0.0 0.0 35.204154369276594 0.0 40 9.09981588039202E-4 0.0 0.0 35.640945531535415 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATAC 35 1.0165968E-7 46.000004 8 CAGTAGG 70 0.0 46.000004 1 GTCGGCG 35 1.0165968E-7 46.000004 3 GAAATAG 20 6.304874E-4 46.0 33 TTGGCGG 25 3.4118173E-5 46.0 1 CCCCTGA 20 6.304874E-4 46.0 22 AAATCCG 20 6.304874E-4 46.0 23 CCGGGAT 25 3.4118173E-5 46.0 4 GGATGCG 20 6.304874E-4 46.0 7 GTGGGCG 20 6.304874E-4 46.0 4 TAGAAGT 20 6.304874E-4 46.0 40 TTCACGG 30 1.8573373E-6 46.0 1 GCCGGGA 20 6.304874E-4 46.0 3 AGGGTTA 25 3.4118173E-5 46.0 5 AGTGGGA 50 1.6370905E-11 46.0 3 TGAAAGG 45 3.092282E-10 46.0 1 TCGATGG 25 3.4118173E-5 46.0 1 TATGCCA 40 5.5897544E-9 46.0 9 CAGGGTT 50 1.6370905E-11 46.0 4 ATCCGAA 20 6.304874E-4 46.0 25 >>END_MODULE