SRR1544952_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544952_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	655455
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	2851	0.4349650242960997	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	2306	0.35181667696485647	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCTT	2218	0.3383908887719218	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	997	0.15210807759495312	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	932	0.14219130222517182	No Hit
ACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	912	0.13913998672677758	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	747	0.11396663386502505	No Hit
AGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	722	0.11015248949203225	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	694	0.1058806477942803	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	661	0.1008459772219298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAAACG	35	1.01867045E-7	46.000004	8
GTTACGG	70	0.0	46.000004	1
ATATCAC	35	1.01867045E-7	46.000004	29
GAACGAA	35	1.01867045E-7	46.000004	8
ACTCATG	35	1.01867045E-7	46.000004	21
GTTGATA	25	3.4155375E-5	46.0	12
AGGTATA	20	6.309459E-4	46.0	5
CGGGTGT	40	5.6043064E-9	46.0	5
CATGGCC	30	1.8601695E-6	46.0	41
CGGGTAC	40	5.6043064E-9	46.0	5
ATCTCGG	40	5.6043064E-9	46.0	1
ACACGTC	25	3.4155375E-5	46.0	23
TCCGCTA	20	6.309459E-4	46.0	39
ACGCCCG	25	3.4155375E-5	46.0	14
TTAATCG	40	5.6043064E-9	46.0	19
CGAGTAG	20	6.309459E-4	46.0	22
CACGGGA	120	0.0	46.0	3
CGCGGCT	20	6.309459E-4	46.0	45
ACGTTAT	25	3.4155375E-5	46.0	32
CCTAGGT	20	6.309459E-4	46.0	2