##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544952_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 655455 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91781281705075 34.0 33.0 34.0 31.0 34.0 2 33.19913190074071 34.0 33.0 34.0 31.0 34.0 3 33.23539831109687 34.0 33.0 34.0 31.0 34.0 4 36.53249879854452 37.0 37.0 37.0 35.0 37.0 5 36.520800054923676 37.0 37.0 37.0 35.0 37.0 6 36.6468331159271 37.0 37.0 37.0 35.0 37.0 7 36.481673036287766 37.0 37.0 37.0 35.0 37.0 8 36.516850127011004 37.0 37.0 37.0 35.0 37.0 9 38.3099282178029 39.0 39.0 39.0 37.0 39.0 10 38.07580993355761 39.0 39.0 39.0 35.0 39.0 11 37.059506754849686 39.0 35.0 39.0 35.0 39.0 12 36.883091897994525 39.0 35.0 39.0 35.0 39.0 13 36.853100517960804 39.0 35.0 39.0 35.0 39.0 14 38.023209831338534 40.0 35.0 41.0 35.0 41.0 15 38.12613375441487 40.0 35.0 41.0 35.0 41.0 16 38.16646299135715 40.0 35.0 41.0 35.0 41.0 17 38.286791618036325 40.0 36.0 41.0 35.0 41.0 18 38.26817706783837 40.0 36.0 41.0 35.0 41.0 19 38.14662333798659 40.0 35.0 41.0 35.0 41.0 20 38.03778443981662 40.0 35.0 41.0 35.0 41.0 21 37.980282399249376 40.0 35.0 41.0 35.0 41.0 22 37.95773012640075 40.0 35.0 41.0 35.0 41.0 23 37.95315925578415 40.0 35.0 41.0 35.0 41.0 24 37.913080226712744 40.0 35.0 41.0 35.0 41.0 25 37.86660716601445 40.0 35.0 41.0 35.0 41.0 26 37.82529082850844 40.0 35.0 41.0 35.0 41.0 27 37.81282773035525 40.0 35.0 41.0 35.0 41.0 28 37.86176320266075 40.0 35.0 41.0 35.0 41.0 29 37.88341838875285 40.0 35.0 41.0 35.0 41.0 30 37.81197183635795 40.0 35.0 41.0 35.0 41.0 31 37.74119962468819 40.0 35.0 41.0 35.0 41.0 32 37.67276166937471 40.0 35.0 41.0 35.0 41.0 33 37.60017239932566 39.0 35.0 41.0 35.0 41.0 34 37.550204056723956 39.0 35.0 41.0 35.0 41.0 35 37.46047402186267 39.0 35.0 41.0 35.0 41.0 36 37.4178593496121 39.0 35.0 41.0 35.0 41.0 37 37.32724290759854 39.0 35.0 41.0 34.0 41.0 38 37.31832543805448 39.0 35.0 41.0 35.0 41.0 39 37.17590376150918 39.0 35.0 41.0 34.0 41.0 40 37.169225957540945 38.0 35.0 41.0 34.0 41.0 41 37.15697797713039 38.0 35.0 41.0 34.0 41.0 42 37.0512148049828 38.0 35.0 41.0 34.0 41.0 43 36.989176983927194 38.0 35.0 41.0 34.0 41.0 44 36.916551098092164 38.0 35.0 41.0 34.0 41.0 45 36.89629951712932 38.0 35.0 41.0 34.0 41.0 46 36.933572861599956 38.0 35.0 41.0 34.0 41.0 47 36.91444416474052 38.0 35.0 41.0 34.0 41.0 48 36.97145799482802 37.0 35.0 41.0 34.0 41.0 49 36.884669428107195 37.0 35.0 41.0 34.0 41.0 50 36.81738944702535 37.0 35.0 41.0 34.0 41.0 51 36.75769045929926 37.0 35.0 41.0 34.0 41.0 52 36.584163672563335 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 7.0 14 10.0 15 12.0 16 13.0 17 20.0 18 61.0 19 89.0 20 215.0 21 320.0 22 504.0 23 814.0 24 1400.0 25 2183.0 26 3136.0 27 3534.0 28 3608.0 29 3964.0 30 4713.0 31 5834.0 32 7815.0 33 11470.0 34 36488.0 35 184812.0 36 20527.0 37 28250.0 38 51044.0 39 281924.0 40 2686.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.029437566270758 22.686378164786294 26.004073506190355 20.280110762752592 2 26.085391064222563 24.022701787308055 27.753392681419776 22.138514467049607 3 25.04824892631836 25.914669962087405 27.03663867084697 22.000442440747268 4 25.087305764697803 27.277997726769954 23.899581206947847 23.735115301584393 5 22.360650235332706 36.08821353105858 21.408182102508945 20.14295413109977 6 87.08988412629395 2.4585974628311633 7.656971111670519 2.7945472992043694 7 86.76888573586288 2.1476684135447894 5.454073887604793 5.629371962987543 8 76.74027965306543 4.157875063886919 12.165900023647696 6.935945259399959 9 55.296702290775116 15.955786438428268 14.378561457308281 14.36894981348834 10 48.767192255761266 16.526229870853072 23.68980326643324 11.016774606952422 11 45.009649785263676 15.149171186427749 22.774866314239727 17.066312714068854 12 19.011831475845025 39.29712947494489 27.14267188441617 14.548367164793921 13 12.44936723344852 43.14758450236859 27.61608348399204 16.78696478019086 14 10.649548786720676 20.426116209350756 53.16947769106957 15.754857312859006 15 11.506968441769457 16.02886544461481 53.19541387280592 19.26875224080982 16 10.98137934717105 19.121068570687537 28.883752507799926 41.01379957434148 17 16.830751157592815 21.894714358727907 37.882539609889314 23.39199487378996 18 23.848471672349742 26.649884431425498 27.832269187053267 21.66937470917149 19 27.573670198564354 21.534811695692305 25.38206284184269 25.509455263900648 20 16.835175565065487 33.59071179562289 27.38586172963819 22.18825090967343 21 19.451068341838877 24.18442150872295 23.912091600491262 32.452418548946916 22 15.24986459787476 33.28069814098603 21.153092126843184 30.316345134296025 23 15.390682808125652 22.19008169897247 40.30299562899055 22.11623986391133 24 14.901556933733056 22.249582351191158 37.988115126133756 24.86074558894203 25 12.398410264625337 32.12989450076664 31.34967312782723 24.122022106780786 26 16.598088350840257 31.05949302392994 27.0430464333936 25.299372191836206 27 15.791778230389578 27.641867099953465 40.052482626572385 16.513872043084575 28 14.726716555675065 22.973964650509952 35.18151513071073 27.117803663104254 29 16.525467041978473 28.58563898360681 29.62339138461069 25.26550258980403 30 26.949523613367816 23.872424499012137 24.111037370986566 25.067014516633485 31 28.288440854063207 22.504367195307076 25.44644559885881 23.760746351770905 32 22.76250848647123 24.001037447269454 27.664294268866662 25.57215979739265 33 14.87699384397098 24.918415451861684 32.10807759495312 28.09651310921421 34 14.518921970234416 20.496296465813824 37.40928057608836 27.575500987863393 35 26.55071667772769 20.491414361016393 30.707981478514924 22.249887482740995 36 18.174550503085644 26.587942726808095 32.752210296664146 22.485296473442112 37 17.026798178364647 29.171491559298502 26.20576546063422 27.595944801702633 38 15.830835068769023 26.4277486631424 29.50789909299647 28.23351717509211 39 23.254533110587303 20.429167524849152 28.270895789947442 28.045403574616106 40 13.302209915249714 18.36571541906004 33.58323607265182 34.74883859303842 41 20.9442295809781 21.10244028956984 26.070744749830272 31.88258537962179 42 20.135936105453464 19.833703305337515 31.964055503428916 28.066305085780108 43 21.745199899306588 26.184253686370536 30.506289524071068 21.56425689025181 44 13.32951918896034 33.002418167532475 28.225126057471527 25.442936586035653 45 20.74116453455996 28.713336537214605 27.01116018643538 23.534338741790055 46 21.989762836502887 20.432829103447222 29.466706333768144 28.110701726281746 47 21.67517220861844 17.5488782601399 32.65288997719142 28.12305955405024 48 19.699445423408164 15.98614702763729 32.25621896240016 32.05818858655437 49 19.740180485311733 24.302507418510803 31.166136500598824 24.791175595578643 50 17.89520256920765 25.903685226293188 27.742560511400477 28.458551693098688 51 17.941277433233402 19.479293010199022 34.18480292316025 28.394626633407327 52 21.825449496914356 16.95295634330351 35.61770068120618 25.60389347857595 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 126.0 1 151.0 2 176.0 3 920.5 4 1665.0 5 1173.0 6 681.0 7 813.5 8 946.0 9 1049.5 10 1153.0 11 1108.5 12 1064.0 13 1072.5 14 1037.5 15 994.0 16 959.5 17 925.0 18 913.0 19 901.0 20 930.0 21 959.0 22 1038.5 23 1118.0 24 1035.0 25 952.0 26 1232.0 27 1512.0 28 1982.5 29 2453.0 30 2838.0 31 3223.0 32 3650.5 33 4078.0 34 5576.5 35 7075.0 36 7987.5 37 8900.0 38 10079.5 39 14326.0 40 17393.0 41 31119.5 42 44846.0 43 63355.5 44 81865.0 45 94446.0 46 107027.0 47 103613.5 48 100200.0 49 85698.0 50 71196.0 51 59702.0 52 48208.0 53 41432.5 54 34657.0 55 28518.0 56 22379.0 57 20246.0 58 18113.0 59 17218.0 60 16323.0 61 15217.5 62 14112.0 63 12011.5 64 8435.0 65 6959.0 66 5412.5 67 3866.0 68 3229.0 69 2592.0 70 2166.0 71 1740.0 72 1333.0 73 926.0 74 874.0 75 822.0 76 751.5 77 681.0 78 478.0 79 275.0 80 188.5 81 102.0 82 57.0 83 12.0 84 8.0 85 4.0 86 3.0 87 2.0 88 2.5 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 655455.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.143597574255978 #Duplication Level Percentage of deduplicated Percentage of total 1 68.6228923787386 15.195577132162649 2 12.741472590403436 5.64284083090613 3 5.2038914851371585 3.4569863660092355 4 2.7102478369564267 2.400585497122434 5 1.4623990577574293 1.6191388113975815 6 0.9351991713521999 1.2425204461320463 7 0.6440178020820005 0.9982609727972458 8 0.4636061535192337 0.8212726477182918 9 0.36531478787440297 0.728044528555392 >10 4.565256623513701 26.63355081783688 >50 1.9736702929961931 28.805153983335924 >100 0.30443812494274963 10.38275725689049 >500 0.005522687073791377 0.9459298583006485 >1k 0.002071007652671766 1.127380850835049 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 2851 0.4349650242960997 No Hit GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 2306 0.35181667696485647 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCTT 2218 0.3383908887719218 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 997 0.15210807759495312 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 932 0.14219130222517182 No Hit ACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 912 0.13913998672677758 No Hit GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 747 0.11396663386502505 No Hit AGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 722 0.11015248949203225 No Hit ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 694 0.1058806477942803 No Hit CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 661 0.1008459772219298 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3451037828683891 0.0 2 0.0 0.0 0.0 1.411996246881937 0.0 3 0.0 0.0 0.0 2.2834519532233335 0.0 4 0.0 0.0 0.0 2.810719271345859 0.0 5 0.0 0.0 0.0 5.836861416878351 0.0 6 0.0 0.0 0.0 6.474433790267829 0.0 7 0.0 0.0 0.0 9.962087404932452 0.0 8 0.0 0.0 0.0 13.35072583167418 0.0 9 0.0 0.0 0.0 17.00437100945145 0.0 10 0.0 0.0 0.0 18.211166289066373 0.0 11 0.0 0.0 0.0 19.453204262687752 0.0 12 0.0 0.0 0.0 20.531996857145035 0.0 13 1.5256577491971226E-4 0.0 0.0 20.85421577377547 0.0 14 1.5256577491971226E-4 0.0 0.0 21.115255814663097 0.0 15 1.5256577491971226E-4 0.0 0.0 22.113341114187854 0.0 16 1.5256577491971226E-4 0.0 0.0 23.130344569802656 0.0 17 1.5256577491971226E-4 0.0 0.0 24.982035380003204 0.0 18 1.5256577491971226E-4 0.0 0.0 25.566972561045382 0.0 19 1.5256577491971226E-4 0.0 0.0 26.361382551052323 0.0 20 1.5256577491971226E-4 0.0 0.0 27.173337605175032 0.0 21 1.5256577491971226E-4 0.0 0.0 27.793212348673823 0.0 22 1.5256577491971226E-4 0.0 0.0 28.617830362114866 0.0 23 1.5256577491971226E-4 0.0 0.0 29.15120031123418 0.0 24 1.5256577491971226E-4 0.0 0.0 29.566789482115478 0.0 25 1.5256577491971226E-4 0.0 0.0 30.055915356508073 0.0 26 1.5256577491971226E-4 0.0 0.0 30.426650189562974 0.0 27 1.5256577491971226E-4 0.0 0.0 30.834000808598606 0.0 28 1.5256577491971226E-4 0.0 0.0 31.204735641653507 0.0 29 1.5256577491971226E-4 0.0 0.0 31.844596501666782 0.0 30 1.5256577491971226E-4 0.0 0.0 32.41198861859319 0.0 31 1.5256577491971226E-4 0.0 0.0 32.83963048569314 0.0 32 1.5256577491971226E-4 0.0 0.0 33.231877093011725 0.0 33 1.5256577491971226E-4 0.0 0.0 33.65250093446537 0.0 34 1.5256577491971226E-4 0.0 0.0 34.28854765010565 0.0 35 1.5256577491971226E-4 0.0 0.0 34.70947662310914 0.0 36 1.5256577491971226E-4 0.0 0.0 35.128269675263745 0.0 37 1.5256577491971226E-4 0.0 0.0 35.51975345370773 0.0 38 1.5256577491971226E-4 0.0 0.0 35.88270743224172 0.0 39 1.5256577491971226E-4 0.0 0.0 36.317825022312746 0.0 40 1.5256577491971226E-4 0.0 0.0 36.725480772898216 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCAAACG 35 1.01867045E-7 46.000004 8 GTTACGG 70 0.0 46.000004 1 ATATCAC 35 1.01867045E-7 46.000004 29 GAACGAA 35 1.01867045E-7 46.000004 8 ACTCATG 35 1.01867045E-7 46.000004 21 GTTGATA 25 3.4155375E-5 46.0 12 AGGTATA 20 6.309459E-4 46.0 5 CGGGTGT 40 5.6043064E-9 46.0 5 CATGGCC 30 1.8601695E-6 46.0 41 CGGGTAC 40 5.6043064E-9 46.0 5 ATCTCGG 40 5.6043064E-9 46.0 1 ACACGTC 25 3.4155375E-5 46.0 23 TCCGCTA 20 6.309459E-4 46.0 39 ACGCCCG 25 3.4155375E-5 46.0 14 TTAATCG 40 5.6043064E-9 46.0 19 CGAGTAG 20 6.309459E-4 46.0 22 CACGGGA 120 0.0 46.0 3 CGCGGCT 20 6.309459E-4 46.0 45 ACGTTAT 25 3.4155375E-5 46.0 32 CCTAGGT 20 6.309459E-4 46.0 2 >>END_MODULE