SRR1544950_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544950_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2132508
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	5676	0.2661654727672768	No Hit
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	5546	0.26006936433532724	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4652	0.2181468955802276	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCTT	4493	0.21069088603653538	Illumina Single End Adapter 1 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3850	0.18053859586927692	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2541	0.11915547327372278	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	2280	0.10691636326803933	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2203	0.1033055913506538	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCATT	20	6.312676E-4	46.0	12
CGGTCTA	135	0.0	44.2963	30
CGAATAT	350	0.0	41.4	14
CTAGCGG	550	0.0	41.4	1
CAACGCA	1695	0.0	41.250736	16
CGTTTTT	3220	0.0	41.142857	1
CGCACTT	1490	0.0	41.060402	34
ATCAACG	1730	0.0	40.416187	14
AACGCAA	1745	0.0	40.33238	17
ACCCGCA	1530	0.0	40.287582	31
CATGCGG	315	0.0	40.15873	1
CTAACGG	235	0.0	40.12766	1
CCGCACT	1525	0.0	40.11803	33
TCAACGC	1770	0.0	39.63277	15
ACATACG	640	0.0	39.53125	16
CGTAGGG	670	0.0	39.47761	2
TGTACGC	35	5.3752756E-6	39.428574	45
AAGCTTA	1740	0.0	39.390804	22
CCCGCAC	1565	0.0	39.38658	32
CACTTAC	1565	0.0	39.239616	36