SRR1544949_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544949_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1289893
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	5480	0.42484144033652405	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	5024	0.3894896708486673	No Hit
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	3905	0.3027382891449136	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCTT	3758	0.29134199503369657	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3080	0.2387794956635938	No Hit
TGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCTTG	2328	0.18048008633274232	Illumina Single End Adapter 1 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2295	0.17792173459348953	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1377	0.10675304075609372	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1340	0.10388458577571939	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCGAA	20	6.3117425E-4	46.0	13
CGGTATG	20	6.3117425E-4	46.0	5
ACGTAGG	120	0.0	44.083332	1
CGCACTT	940	0.0	43.06383	34
TAGGGCG	150	0.0	42.93333	4
ATTGCGG	220	0.0	42.86364	1
ATAGCGG	200	0.0	42.55	1
CATGCGG	195	0.0	42.46154	1
TCAACGC	1060	0.0	42.094337	15
TACGCGG	175	0.0	42.057144	1
CAACGCA	1065	0.0	41.896713	16
ATCAACG	1060	0.0	41.877354	14
CGTTTTT	2160	0.0	41.634262	1
CGGTAGT	105	0.0	41.619045	11
CCGTAGG	50	8.712959E-10	41.399998	1
CCCGCAC	980	0.0	41.30612	32
ACCCGCA	975	0.0	41.046154	31
TCGGCGT	875	0.0	41.005714	4
TACGGGC	180	0.0	40.88889	3
CCGCACT	990	0.0	40.888885	33