SRR1544948_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544948_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	757586
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	2933	0.38715076572164747	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTT	2479	0.3272235759372533	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	2291	0.30240791144503726	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1462	0.19298139089159513	No Hit
GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT	1356	0.1789895800608776	No Hit
ACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1064	0.1404461011687122	No Hit
TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	1036	0.13675015113795663	No Hit
GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA	891	0.11761040990725805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	6.310084E-4	46.000004	13
AACGTCC	20	6.310084E-4	46.000004	38
AATCCGG	40	5.6061253E-9	46.000004	1
CGAACGG	20	6.310084E-4	46.000004	18
TCCGCGA	20	6.310084E-4	46.000004	24
TCCGCCT	20	6.310084E-4	46.000004	46
GATCGTA	20	6.310084E-4	46.000004	8
ATAGGCG	20	6.310084E-4	46.000004	13
CCGATTC	20	6.310084E-4	46.000004	10
CTATCGG	40	5.6061253E-9	46.000004	1
GCGCGTC	20	6.310084E-4	46.000004	33
TTTAACG	20	6.310084E-4	46.000004	35
TTTCGAG	20	6.310084E-4	46.000004	13
ACTCTTA	20	6.310084E-4	46.000004	39
GGCCGGC	20	6.310084E-4	46.000004	8
TACGGGT	40	5.6061253E-9	46.000004	3
ATCACGG	40	5.6061253E-9	46.000004	1
CCGTCCG	20	6.310084E-4	46.000004	21
AACGGTC	20	6.310084E-4	46.000004	20
ATCCGGA	20	6.310084E-4	46.000004	9