##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544946_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 975156 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.936509645636185 34.0 33.0 34.0 31.0 34.0 2 33.259422082210435 34.0 33.0 34.0 31.0 34.0 3 33.31847212138366 34.0 34.0 34.0 31.0 34.0 4 36.58901242467872 37.0 37.0 37.0 35.0 37.0 5 36.58245655054166 37.0 37.0 37.0 35.0 37.0 6 36.66089733334974 37.0 37.0 37.0 35.0 37.0 7 36.50802333165155 37.0 37.0 37.0 35.0 37.0 8 36.541464134969175 37.0 37.0 37.0 35.0 37.0 9 38.34172583668664 39.0 39.0 39.0 37.0 39.0 10 38.16770752577023 39.0 39.0 39.0 35.0 39.0 11 37.545207125834224 39.0 35.0 39.0 35.0 39.0 12 37.47225264470505 39.0 35.0 39.0 35.0 39.0 13 37.45872045088171 39.0 35.0 39.0 35.0 39.0 14 38.797819015624164 41.0 35.0 41.0 35.0 41.0 15 38.862972693599794 41.0 35.0 41.0 35.0 41.0 16 38.87037458622005 41.0 36.0 41.0 35.0 41.0 17 38.92413521528863 41.0 36.0 41.0 35.0 41.0 18 38.90653495440729 41.0 36.0 41.0 35.0 41.0 19 38.8269712743397 41.0 36.0 41.0 35.0 41.0 20 38.74975286005521 41.0 35.0 41.0 35.0 41.0 21 38.7045231737281 41.0 35.0 41.0 35.0 41.0 22 38.66848893920562 41.0 35.0 41.0 35.0 41.0 23 38.63102416433883 41.0 35.0 41.0 35.0 41.0 24 38.58250064605048 41.0 35.0 41.0 35.0 41.0 25 38.54973563204246 40.0 35.0 41.0 35.0 41.0 26 38.496944078691 40.0 35.0 41.0 35.0 41.0 27 38.47321044017573 40.0 36.0 41.0 35.0 41.0 28 38.48558179409243 40.0 36.0 41.0 35.0 41.0 29 38.496251881750204 40.0 36.0 41.0 35.0 41.0 30 38.43377572408927 40.0 35.0 41.0 35.0 41.0 31 38.368092900007795 40.0 35.0 41.0 35.0 41.0 32 38.30987965002522 40.0 35.0 41.0 35.0 41.0 33 38.216613546960694 40.0 35.0 41.0 35.0 41.0 34 38.148812087501895 40.0 35.0 41.0 35.0 41.0 35 38.07751785355369 40.0 35.0 41.0 35.0 41.0 36 38.01399160749665 40.0 35.0 41.0 35.0 41.0 37 37.980830759386194 40.0 35.0 41.0 35.0 41.0 38 37.925806742716034 40.0 35.0 41.0 35.0 41.0 39 37.83562937622288 40.0 35.0 41.0 35.0 41.0 40 37.75737317926568 40.0 35.0 41.0 35.0 41.0 41 37.71523735689469 40.0 35.0 41.0 35.0 41.0 42 37.640900532837826 40.0 35.0 41.0 35.0 41.0 43 37.570112884502585 40.0 35.0 41.0 35.0 41.0 44 37.5125415830903 39.0 35.0 41.0 35.0 41.0 45 37.43301789662372 39.0 35.0 41.0 35.0 41.0 46 37.436783447981654 39.0 35.0 41.0 35.0 41.0 47 37.41191050457568 39.0 35.0 41.0 35.0 41.0 48 37.40742917030711 39.0 35.0 41.0 35.0 41.0 49 37.36496622078929 39.0 35.0 41.0 35.0 41.0 50 37.29559680707497 39.0 35.0 41.0 35.0 41.0 51 37.22129690018828 39.0 35.0 41.0 34.0 41.0 52 37.00357173621451 38.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 6.0 14 19.0 15 22.0 16 21.0 17 33.0 18 73.0 19 146.0 20 239.0 21 407.0 22 616.0 23 1029.0 24 1776.0 25 2900.0 26 4101.0 27 4735.0 28 4772.0 29 5301.0 30 6061.0 31 7444.0 32 9861.0 33 13783.0 34 42898.0 35 184386.0 36 33955.0 37 52031.0 38 96423.0 39 497192.0 40 4922.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.18156274483262 22.08087731603969 23.960679111854922 20.776880827272766 2 26.710598099175925 24.436602964038574 25.972152147964017 22.880646788821483 3 26.81837572655042 25.33502331934583 25.09885597791533 22.747744976188425 4 25.96692221552244 27.922814400977895 22.57085020242915 23.539413181070515 5 23.294529285570718 35.55369602402077 20.678127397052368 20.47364729335614 6 87.38314690162395 3.245839640016572 6.776146585777044 2.594866872582438 7 87.79015870281268 2.779657818851548 5.156508292006612 4.273675186329162 8 78.17836325675071 5.114566284779051 10.283175204787746 6.423895253682488 9 48.677955116924885 22.495067455873727 14.886746325716091 13.9402311014853 10 37.97628276911592 21.520146520146522 26.22113795126113 14.282432759476432 11 37.91321593673217 17.769156934890418 25.132696717243192 19.184930411134218 12 20.856560386235635 33.68332861613937 27.12222454663664 18.337886450988357 13 14.553876507963853 35.38141589653348 28.185746690785884 21.878960904716784 14 12.90921657662979 24.491568528522617 42.32379229579678 20.27542259905082 15 15.3563122208139 18.786635164014783 44.03428784727777 21.822764767893545 16 15.125579907214846 22.59279540914479 28.145958185151915 34.13566649848845 17 17.98358416499514 22.969042901853655 33.151721365607145 25.895651567544064 18 22.262284188376015 27.499907707074563 26.805967455463538 23.43184064908589 19 25.202326602102637 22.84721624027335 27.048800397064674 24.901656760559337 20 19.115403073969702 30.92212938237574 27.139555107080305 22.82291243657425 21 20.99356410666601 25.314923971138974 24.975696196300902 28.71581572589411 22 18.349884531295505 30.026067624051944 24.208229247422977 27.415818597229567 23 17.86616705429695 22.087337820820462 37.8749656465222 22.171529478360384 24 19.024238173174343 23.260278355463125 33.12690482343338 24.58857864792915 25 17.10187908396195 30.082981594739717 28.118577950604827 24.69656137069351 26 17.488894084638765 29.06488807944575 27.443096284081726 26.003121551833758 27 19.197031039136302 25.554372838807325 34.82653031925149 20.422065802804884 28 16.135059416134446 24.417631640475985 32.580428157135884 26.866880786253688 29 18.407516335847802 28.0032117938053 28.263170200460237 25.326101669886665 30 24.55996784104287 25.929594854566858 25.317077472732567 24.193359831657705 31 25.14500244063514 26.90707948266739 24.24740246688735 23.70051560981012 32 22.222290587352177 26.271181226388396 25.051786585941123 26.45474160031831 33 16.70050740599453 27.89122971093856 27.28763397856343 28.120628904503487 34 17.59995323825111 24.902887332898533 30.860498217721062 26.636661211129297 35 24.035436381461018 25.06983498024931 24.44388385037881 26.45084478791086 36 18.52862516356357 29.80169326753873 28.98541361587274 22.684267953024953 37 18.641427627989778 27.864362214866134 29.864042266057943 23.630167891086142 38 17.31548593250721 29.83891808079938 26.713366886939117 26.132229099754294 39 23.24058919803601 24.557814339449276 27.12960798067181 25.071988481842904 40 15.83110804835329 22.596282030772514 31.96473179675867 29.607878124115526 41 19.596659406289866 24.908014717645177 25.713321765953346 29.782004110111615 42 20.07668516627083 24.575247447587873 27.67557190849464 27.672495477646653 43 20.978592143205805 28.687922752872364 26.413825070040076 23.919660033881758 44 16.79885064543519 30.97688985146992 25.916776392700246 26.307483110394646 45 20.235428998026983 27.767864833934265 26.8145814618379 25.182124706200852 46 21.17415059744287 24.587245527895025 28.343567593287638 25.895036281374466 47 20.034743159043273 22.209061934705833 31.380415031030935 26.375779875219962 48 18.536316240683544 22.623252074539867 29.268752896972384 29.571678787804206 49 18.552108585703213 25.824278371870758 30.557982517668968 25.065630524757065 50 17.680965917248113 26.668656091948368 28.41678664746974 27.233591343333785 51 18.372650119570615 22.84721624027335 30.329506253358435 28.4506273867976 52 20.981053287884194 21.526709572622227 31.481219415149987 26.011017724343592 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 148.0 1 288.0 2 428.0 3 1981.5 4 3535.0 5 2363.0 6 1191.0 7 1303.5 8 1416.0 9 1559.0 10 1702.0 11 1584.0 12 1466.0 13 1434.0 14 1325.5 15 1249.0 16 1170.0 17 1091.0 18 1127.0 19 1163.0 20 1269.5 21 1376.0 22 1345.0 23 1314.0 24 1966.5 25 2619.0 26 3725.5 27 4832.0 28 7510.5 29 10189.0 30 9817.5 31 9446.0 32 11608.0 33 13770.0 34 16946.5 35 20123.0 36 22959.5 37 25796.0 38 26611.5 39 30465.5 40 33504.0 41 44032.0 42 54560.0 43 73579.5 44 92599.0 45 106550.0 46 120501.0 47 117578.5 48 114656.0 49 101419.0 50 88182.0 51 78405.0 52 68628.0 53 60369.0 54 52110.0 55 47679.5 56 43249.0 57 39611.5 58 35974.0 59 34360.0 60 32746.0 61 32198.0 62 31650.0 63 29054.0 64 21784.5 65 17111.0 66 14675.5 67 12240.0 68 9646.0 69 7052.0 70 5914.5 71 4777.0 72 4003.0 73 3229.0 74 2533.5 75 1838.0 76 1464.0 77 1090.0 78 954.5 79 819.0 80 550.0 81 281.0 82 210.5 83 140.0 84 97.5 85 55.0 86 35.0 87 15.0 88 9.5 89 4.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 975156.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.94402438005994 #Duplication Level Percentage of deduplicated Percentage of total 1 70.0655898406769 15.375210116670942 2 12.169858002072857 5.341113213987088 3 4.565090626218882 3.0052937999679075 4 2.2666786348645025 1.989602049009105 5 1.2491930848481037 1.3706161754654536 6 0.8028676366190287 1.0570888195157442 7 0.547535969180028 0.8410599859652398 8 0.40600950075949765 0.7127585906561905 9 0.30584459995712426 0.6040315222171933 >10 5.472692224957135 32.921449641504914 >50 1.9376586941829719 27.242383828413026 >100 0.2011572280156867 6.841187383145207 >500 0.004678075070132248 0.6702396750480937 >1k 0.005145882577145474 2.027965198433924 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 3250 0.3332800085319682 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 2723 0.2792373733023229 No Hit GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 2253 0.23103995668385366 No Hit CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCTT 2135 0.21893932868176988 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2014 0.2065310575948874 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 1816 0.18622661399817056 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1181 0.1211088277157706 No Hit GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA 1161 0.11905787381711234 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1112 0.1140330367653996 No Hit TCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 1071 0.10982858127315015 No Hit ACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 1039 0.10654705503529692 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2236565226486839 0.0 2 0.0 0.0 0.0 0.9850731575255651 0.0 3 0.0 0.0 0.0 1.6188179122109694 0.0 4 0.0 0.0 0.0 1.9960908818691574 0.0 5 0.0 0.0 0.0 4.15923195878403 0.0 6 0.0 0.0 0.0 4.55239982115682 0.0 7 0.0 0.0 0.0 6.392413111338083 0.0 8 0.0 0.0 0.0 8.337742884215448 0.0 9 0.0 0.0 0.0 10.132122450151565 0.0 10 0.0 0.0 0.0 10.990754299824848 0.0 11 0.0 0.0 0.0 11.853795700380246 0.0 12 0.0 0.0 0.0 12.581371595929268 0.0 13 0.0 0.0 0.0 12.856814704519072 0.0 14 0.0 0.0 0.0 13.075754033200841 0.0 15 0.0 0.0 0.0 13.811533744344494 0.0 16 0.0 0.0 0.0 14.671806357136704 0.0 17 0.0 0.0 0.0 15.805983863094726 0.0 18 0.0 0.0 0.0 16.298315346467643 0.0 19 0.0 0.0 0.0 16.882837207585247 0.0 20 0.0 0.0 0.0 17.583237963977044 0.0 21 0.0 0.0 0.0 18.19278146265828 0.0 22 0.0 0.0 0.0 18.938303204820564 0.0 23 0.0 0.0 0.0 19.48231872643967 0.0 24 1.025476949329133E-4 0.0 0.0 19.929529224042103 0.0 25 2.050953898658266E-4 0.0 0.0 20.37622698316987 0.0 26 2.050953898658266E-4 0.0 0.0 20.782931141273806 0.0 27 2.050953898658266E-4 0.0 0.0 21.191686253276398 0.0 28 2.050953898658266E-4 0.0 0.0 21.610080848602685 0.0 29 3.076430847987399E-4 0.0 0.0 22.139124406761585 0.0 30 3.076430847987399E-4 0.0 0.0 22.628379459286514 0.0 31 3.076430847987399E-4 0.0 0.0 23.05969506417435 0.0 32 3.076430847987399E-4 0.0 0.0 23.45542661892046 0.0 33 3.076430847987399E-4 0.0 0.0 23.86264351549906 0.0 34 3.076430847987399E-4 0.0 0.0 24.427578766884476 0.0 35 3.076430847987399E-4 0.0 0.0 24.826284204783644 0.0 36 3.076430847987399E-4 0.0 0.0 25.247652683262984 0.0 37 3.076430847987399E-4 0.0 0.0 25.647075955026683 0.0 38 4.101907797316532E-4 0.0 0.0 26.01552982292064 0.0 39 4.101907797316532E-4 0.0 0.0 26.436590658315183 0.0 40 4.101907797316532E-4 0.0 0.0 26.844730484148176 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 20 6.3109805E-4 46.000004 13 TCCGCTT 20 6.3109805E-4 46.000004 19 GACGTAG 20 6.3109805E-4 46.000004 16 CACGCTA 20 6.3109805E-4 46.000004 25 TAAACGG 40 5.6097633E-9 46.000004 1 CGTAGTC 20 6.3109805E-4 46.000004 18 GTTCGAC 20 6.3109805E-4 46.000004 12 TACGAGT 20 6.3109805E-4 46.000004 30 ACGTAGG 70 0.0 46.000004 1 TCGGTAA 20 6.3109805E-4 46.000004 13 TACCGCC 20 6.3109805E-4 46.000004 14 CGAAGCA 20 6.3109805E-4 46.000004 31 GTTCGAT 30 1.8611099E-6 46.0 38 GCGTATG 25 3.416772E-5 46.0 25 AGTACGG 30 1.8611099E-6 46.0 1 ACCGGGT 95 0.0 45.999996 3 CTAACGG 145 0.0 44.41379 1 TTAGCGG 285 0.0 44.385963 1 AATGCGG 140 0.0 44.357143 1 CCGGGTA 85 0.0 43.294117 4 >>END_MODULE