##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544945_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 608458 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.9157986253776 34.0 33.0 34.0 31.0 34.0 2 33.2803381663155 34.0 34.0 34.0 31.0 34.0 3 33.4086247530643 34.0 34.0 34.0 31.0 34.0 4 36.62182106242337 37.0 37.0 37.0 35.0 37.0 5 36.62595610543374 37.0 37.0 37.0 35.0 37.0 6 36.4222049837458 37.0 37.0 37.0 35.0 37.0 7 36.268028360215496 37.0 37.0 37.0 35.0 37.0 8 36.39955099612463 37.0 37.0 37.0 35.0 37.0 9 38.27919264764372 39.0 39.0 39.0 37.0 39.0 10 38.18317616006364 39.0 39.0 39.0 35.0 39.0 11 37.61753646102114 39.0 35.0 39.0 35.0 39.0 12 37.59565820483912 39.0 35.0 39.0 35.0 39.0 13 37.58283069661341 39.0 35.0 39.0 35.0 39.0 14 38.86179161092466 41.0 36.0 41.0 35.0 41.0 15 38.896252494009445 41.0 36.0 41.0 35.0 41.0 16 38.93125080120567 41.0 36.0 41.0 35.0 41.0 17 39.01193837536855 41.0 36.0 41.0 35.0 41.0 18 39.0087845011488 41.0 36.0 41.0 35.0 41.0 19 38.96122164553675 41.0 36.0 41.0 35.0 41.0 20 38.89422277297694 41.0 35.0 41.0 35.0 41.0 21 38.84684398923179 41.0 35.0 41.0 35.0 41.0 22 38.81627491133324 41.0 35.0 41.0 35.0 41.0 23 38.76531165667967 41.0 35.0 41.0 35.0 41.0 24 38.73497266861476 41.0 35.0 41.0 35.0 41.0 25 38.69884856473249 41.0 35.0 41.0 35.0 41.0 26 38.631277754586186 41.0 35.0 41.0 35.0 41.0 27 38.699144394518605 41.0 36.0 41.0 35.0 41.0 28 38.70103934864855 41.0 36.0 41.0 35.0 41.0 29 38.7190751046087 41.0 36.0 41.0 35.0 41.0 30 38.66611006840242 41.0 35.0 41.0 35.0 41.0 31 38.60735827287997 41.0 35.0 41.0 35.0 41.0 32 38.55513774163541 41.0 35.0 41.0 35.0 41.0 33 38.488314723448454 41.0 35.0 41.0 35.0 41.0 34 38.405628654730485 41.0 35.0 41.0 35.0 41.0 35 38.335699423789315 40.0 35.0 41.0 35.0 41.0 36 38.288910656117594 40.0 35.0 41.0 35.0 41.0 37 38.24885037258118 40.0 35.0 41.0 35.0 41.0 38 38.19577193495689 40.0 35.0 41.0 35.0 41.0 39 38.14835370724027 40.0 35.0 41.0 35.0 41.0 40 38.084773312208895 40.0 35.0 41.0 35.0 41.0 41 38.046137942142266 40.0 35.0 41.0 35.0 41.0 42 37.979587744758064 40.0 35.0 41.0 35.0 41.0 43 37.92437111517968 40.0 35.0 41.0 35.0 41.0 44 37.798013996035884 40.0 35.0 41.0 35.0 41.0 45 37.77781868263709 40.0 35.0 41.0 35.0 41.0 46 37.701764131624536 40.0 35.0 41.0 35.0 41.0 47 37.636453132344386 40.0 35.0 41.0 35.0 41.0 48 37.58448405641803 39.0 35.0 41.0 35.0 41.0 49 37.54845856246446 39.0 35.0 41.0 35.0 41.0 50 37.48452152819093 39.0 35.0 41.0 35.0 41.0 51 37.40528845047645 39.0 35.0 41.0 35.0 41.0 52 36.93755033215111 38.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 2.0 14 5.0 15 5.0 16 15.0 17 24.0 18 50.0 19 80.0 20 134.0 21 239.0 22 343.0 23 564.0 24 971.0 25 1652.0 26 2322.0 27 2737.0 28 2583.0 29 2524.0 30 2889.0 31 3541.0 32 4739.0 33 7284.0 34 25133.0 35 110325.0 36 19973.0 37 32242.0 38 61058.0 39 323742.0 40 3277.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.15725982730115 21.481186869101894 22.921056178076384 22.44049712552058 2 26.39837096397779 24.653139575780088 26.213641697537053 22.73484776270507 3 27.125947887939677 25.19039933734128 25.32418014061776 22.359472634101284 4 25.915675362966713 27.57511611319105 22.98268738351702 23.526521140325215 5 23.351652866754975 35.28082464196378 20.814912450818298 20.55261004046294 6 86.11013414237301 3.191017292894497 7.4126726906376454 3.2861758740948432 7 86.4156605714774 2.606424765554894 5.951930946753926 5.025983716213773 8 76.1607210357987 5.108158656801291 11.37416222648071 7.356958080919307 9 48.0440720641359 21.720480296092745 15.48422405490601 14.751223584865347 10 37.02819257861677 21.178618737858653 27.213546374605972 14.579642308918611 11 36.46923863274047 17.584944236085317 25.807697491034716 20.1381196401395 12 20.532723704840762 32.26467562263953 28.155764243382453 19.04683642913726 13 14.640123065191023 34.24624213996693 28.78308773982756 22.33054705501448 14 12.974765719244385 23.951036883400334 41.83937100013477 21.234826397220516 15 15.178040226276918 18.48278763694454 43.90508465662379 22.43408748015475 16 15.034069730367586 22.811106107570282 28.57649993919054 33.578324222871586 17 17.62816825483435 23.33341002994455 33.13901699049072 25.899404724730385 18 21.843414007211674 27.65318230674919 27.09439271075407 23.409010975285067 19 24.727425722071203 22.68817239645136 26.88649011106765 25.697911770409792 20 18.749363144210445 31.075932932100493 27.111320748515098 23.063383175173964 21 20.453178362352045 25.101814751387934 25.091953758517434 29.35305312774259 22 18.172988110929598 30.23528328989018 24.32657636188529 27.26515223729493 23 17.572782344878366 22.29110308353247 37.46388411361178 22.67223045797738 24 19.08759519966867 23.359212961289032 32.43329860072512 25.119893238317186 25 17.190668871146407 29.47385029040624 28.360872895088896 24.974607943358457 26 17.62290905863675 28.01146504771077 27.383484151740962 26.98214174191152 27 19.671037277840046 24.96030950369623 34.5447015241808 20.823951694282925 28 16.513547360705257 24.60005456416055 32.042474583290876 26.843923491843313 29 18.75265014183395 26.96554240391284 27.955257388348908 26.326550065904303 30 24.248345818445973 25.612614182079945 24.975594042645508 25.16344595682857 31 24.953406808686875 26.67990231043063 23.583386199211777 24.783304681670714 32 21.45390478882684 25.37545730354437 25.474560281892916 27.696077625735878 33 16.238918709261775 27.790085757767997 27.469439139595504 28.501556393374727 34 17.58642338501589 24.337259104161667 31.318184656952493 26.75813285386995 35 23.348858918775 24.92875432651062 24.532999812641133 27.18938694207324 36 18.550335438107478 29.78496461547058 28.287408498203654 23.377291448218283 37 18.572193972303758 27.790743157292695 29.87338485154275 23.763678018860794 38 17.060339415374603 29.632612275621323 26.25965966426606 27.047388644738007 39 23.033964546443634 24.344654848814546 27.02109266375 25.600287940991816 40 15.866173178756792 22.494403886545992 31.55534153548807 30.08408139920915 41 19.480391415677005 25.060069881569476 25.512360754563172 29.947177948190344 42 19.924957844255477 24.068547048440482 27.697063725022925 28.309431382281108 43 21.55251471753186 28.198823912250308 26.285133895848194 23.963527474369638 44 17.02401809163492 29.597277051168692 26.732658622287815 26.64604623490857 45 20.061861295274284 26.773088693056874 27.207794128764846 25.957255882903997 46 21.400984127088478 23.379427996673556 28.656373981441615 26.563213894796355 47 19.684678317977575 21.549063370027184 31.520006311035438 27.246252000959803 48 18.279322484049846 21.746283227437228 29.248197903552914 30.726196384960012 49 18.588464610540086 24.653139575780088 30.875754776829297 25.88264103685053 50 17.846260547153626 25.637759713899726 28.941685375161473 27.574294363785175 51 18.342761538183407 21.90044341597941 30.49150475464206 29.265290291195118 52 20.84893287622153 21.145091362098945 32.00845415788764 25.997521603791878 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 83.0 1 189.0 2 295.0 3 1273.5 4 2252.0 5 1533.0 6 814.0 7 886.0 8 958.0 9 1022.5 10 1087.0 11 1062.0 12 1037.0 13 975.5 14 847.5 15 781.0 16 749.0 17 717.0 18 723.5 19 730.0 20 738.0 21 746.0 22 781.5 23 817.0 24 1173.5 25 1530.0 26 2090.0 27 2650.0 28 3926.0 29 5202.0 30 5159.5 31 5117.0 32 6301.0 33 7485.0 34 9298.0 35 11111.0 36 12806.0 37 14501.0 38 15205.0 39 17423.0 40 18937.0 41 25240.5 42 31544.0 43 43899.0 44 56254.0 45 66619.0 46 76984.0 47 76550.0 48 76116.0 49 67068.5 50 58021.0 51 51312.5 52 44604.0 53 38951.5 54 33299.0 55 30253.0 56 27207.0 57 24939.0 58 22671.0 59 21439.5 60 20208.0 61 19813.0 62 19418.0 63 18432.5 64 14273.5 65 11100.0 66 9361.0 67 7622.0 68 6040.0 69 4458.0 70 3744.5 71 3031.0 72 2562.5 73 2094.0 74 1629.0 75 1164.0 76 923.5 77 683.0 78 610.0 79 537.0 80 365.0 81 193.0 82 137.0 83 81.0 84 61.5 85 42.0 86 23.0 87 4.0 88 3.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 608458.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.464598060462503 #Duplication Level Percentage of deduplicated Percentage of total 1 71.43580155030065 18.905197751556713 2 10.948723912703564 5.795071552493483 3 3.9181729421168043 3.110786161335031 4 1.9297503311537643 2.0428026748411514 5 1.0751759809069161 1.4227050089482522 6 0.6964310056264811 1.1058459984449114 7 0.5411811521752661 1.0025499169151486 8 0.4493515225527335 0.9513525945771953 9 0.41804856842846094 0.9957138599889876 >10 8.138706375382322 51.920373845882814 >50 0.36628853773201375 6.406910754041524 >100 0.07176010534783915 3.2433365262617095 >500 0.006240009160681665 1.0885984919102438 >1k 0.004368006412477166 2.0087548628028222 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 2855 0.4692189107547275 No Hit GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 2019 0.3318224100923975 No Hit CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCTT 2007 0.3298502115182971 Illumina Single End Adapter 2 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1580 0.25967281225655675 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1278 0.21003914814169589 No Hit TGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCTTG 1250 0.20543735146879488 Illumina Single End Adapter 2 (95% over 22bp) GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 1175 0.1931111103806672 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 827 0.1359173517317547 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 768 0.12622070874242758 No Hit ACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 722 0.11866061420837593 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 708 0.11635971587192542 No Hit TCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 684 0.11241531872372455 No Hit GCCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 643 0.10567697359554809 No Hit CGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC 612 0.10058212727912198 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.333958958547673 0.0 2 0.0 0.0 0.0 1.3401089311012429 0.0 3 0.0 0.0 0.0 2.0864217415170807 0.0 4 0.0 0.0 0.0 2.5604067988258845 0.0 5 0.0 0.0 0.0 5.033708160629 0.0 6 0.0 0.0 0.0 5.482712035999198 0.0 7 0.0 0.0 0.0 7.704229379842158 0.0 8 0.0 0.0 0.0 10.016303508212564 0.0 9 0.0 0.0 0.0 12.17372439839726 0.0 10 0.0 0.0 0.0 13.183983117980207 0.0 11 0.0 0.0 0.0 14.1919409392267 0.0 12 0.0 0.0 0.0 15.055270865039164 0.0 13 0.0 0.0 0.0 15.385449776319811 0.0 14 0.0 0.0 0.0 15.645122588576369 0.0 15 0.0 0.0 0.0 16.498427171637154 0.0 16 0.0 0.0 0.0 17.458230477699363 0.0 17 0.0 0.0 0.0 18.62642943309152 0.0 18 0.0 0.0 0.0 19.14183066045643 0.0 19 0.0 0.0 0.0 19.740721627458264 0.0 20 0.0 0.0 0.0 20.50199027706103 0.0 21 0.0 0.0 0.0 21.18864408061033 0.0 22 0.0 0.0 0.0 21.97456521238935 0.0 23 0.0 0.0 0.0 22.546995848522002 0.0 24 1.643498811750359E-4 0.0 0.0 23.037580243829485 0.0 25 1.643498811750359E-4 0.0 0.0 23.52668549020639 0.0 26 1.643498811750359E-4 0.0 0.0 23.96763622139901 0.0 27 1.643498811750359E-4 0.0 0.0 24.41302439938336 0.0 28 1.643498811750359E-4 0.0 0.0 24.857097778318305 0.0 29 1.643498811750359E-4 0.0 0.0 25.403396783344125 0.0 30 1.643498811750359E-4 0.0 0.0 25.919784109996087 0.0 31 1.643498811750359E-4 0.0 0.0 26.382922075147338 0.0 32 1.643498811750359E-4 0.0 0.0 26.795275927015506 0.0 33 1.643498811750359E-4 0.0 0.0 27.23606230832695 0.0 34 1.643498811750359E-4 0.0 0.0 27.82246268435948 0.0 35 1.643498811750359E-4 0.0 0.0 28.23103648896062 0.0 36 1.643498811750359E-4 0.0 0.0 28.66360537621331 0.0 37 1.643498811750359E-4 0.0 0.0 29.053278944479324 0.0 38 1.643498811750359E-4 0.0 0.0 29.439172465478308 0.0 39 1.643498811750359E-4 0.0 0.0 29.865989106889877 0.0 40 1.643498811750359E-4 0.0 0.0 30.299708443310795 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGGT 35 1.01850674E-7 46.000004 3 TAAACGG 45 3.092282E-10 46.000004 1 ACGTAGG 75 0.0 46.000004 1 ACGCGAG 20 6.309102E-4 46.0 44 ACAACGT 20 6.309102E-4 46.0 8 ATTTACG 20 6.309102E-4 46.0 41 TTTACGG 30 1.8599494E-6 46.0 1 GGCACTA 25 3.415248E-5 46.0 7 TTATGCG 20 6.309102E-4 46.0 12 TAGCGCA 20 6.309102E-4 46.0 23 CGCGCGA 20 6.309102E-4 46.0 27 ACGGGTC 30 1.8599494E-6 46.0 4 TCGGCCA 20 6.309102E-4 46.0 11 GTAATCG 20 6.309102E-4 46.0 20 GCCGATG 40 5.6043064E-9 46.0 8 CTAACGG 55 1.8189894E-12 46.0 1 TCGGAGT 20 6.309102E-4 46.0 42 GCCGAAC 20 6.309102E-4 46.0 10 CCATCAA 25 3.415248E-5 46.0 30 CTTGCGT 20 6.309102E-4 46.0 15 >>END_MODULE