SRR1544944_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544944_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1190167
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	4100	0.3444894708053576	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCTT	3631	0.30508323621811057	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	3578	0.30063007964428523	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2383	0.20022400217784564	No Hit
TCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	1554	0.1305699116174453	Illumina Single End Adapter 1 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	1500	0.1260327332214723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	35	1.0196163E-7	46.000004	7
AAATCCG	35	1.0196163E-7	46.000004	21
TACCGAA	35	1.0196163E-7	46.000004	8
GTCGCGA	20	6.311545E-4	46.0	21
TCGTTAG	25	3.4172303E-5	46.0	12
GTTTCGA	25	3.4172303E-5	46.0	32
CGACCCA	20	6.311545E-4	46.0	35
GCGCCTA	25	3.4172303E-5	46.0	33
TTCGCGT	20	6.311545E-4	46.0	15
GCGTAAC	20	6.311545E-4	46.0	32
GTACGCA	25	3.4172303E-5	46.0	8
ATGGGCG	180	0.0	45.999996	4
CTAACGG	90	0.0	45.999996	1
CGGTCTA	110	0.0	43.909092	30
ATCGCGG	205	0.0	43.756096	1
CATGCGG	200	0.0	43.699997	1
AACGGGA	290	0.0	43.620693	3
TATCCGG	95	0.0	43.57895	1
ACGGGCC	90	0.0	43.444443	4
GCGATAG	85	0.0	43.294117	8