##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544941_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 450142 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.888353008606174 34.0 33.0 34.0 31.0 34.0 2 33.26859524327879 34.0 33.0 34.0 31.0 34.0 3 33.402706257136636 34.0 34.0 34.0 31.0 34.0 4 36.61631662897486 37.0 37.0 37.0 35.0 37.0 5 36.62296342043177 37.0 37.0 37.0 35.0 37.0 6 36.423099821834 37.0 37.0 37.0 35.0 37.0 7 36.21920194072093 37.0 37.0 37.0 35.0 37.0 8 36.350793749527924 37.0 37.0 37.0 35.0 37.0 9 38.23045616716503 39.0 39.0 39.0 37.0 39.0 10 38.16222436475601 39.0 39.0 39.0 35.0 39.0 11 37.715205424066184 39.0 37.0 39.0 35.0 39.0 12 37.71010703289184 39.0 37.0 39.0 35.0 39.0 13 37.71930857373896 39.0 37.0 39.0 35.0 39.0 14 39.026878185106035 41.0 38.0 41.0 35.0 41.0 15 39.04287980237347 41.0 38.0 41.0 35.0 41.0 16 39.06261801831422 41.0 38.0 41.0 35.0 41.0 17 39.131838397661184 41.0 38.0 41.0 35.0 41.0 18 39.12830173589667 41.0 38.0 41.0 35.0 41.0 19 39.08402015364041 41.0 37.0 41.0 35.0 41.0 20 39.02339928289295 41.0 37.0 41.0 35.0 41.0 21 38.96614623829814 41.0 37.0 41.0 35.0 41.0 22 38.937892931563816 41.0 37.0 41.0 35.0 41.0 23 38.89357802648942 41.0 36.0 41.0 35.0 41.0 24 38.83663377334263 41.0 36.0 41.0 35.0 41.0 25 38.78409035371061 41.0 36.0 41.0 35.0 41.0 26 38.711728743374316 41.0 36.0 41.0 35.0 41.0 27 38.76871742694527 41.0 36.0 41.0 35.0 41.0 28 38.778352164428114 41.0 36.0 41.0 35.0 41.0 29 38.79246771018923 41.0 36.0 41.0 35.0 41.0 30 38.74818612793296 41.0 36.0 41.0 35.0 41.0 31 38.689624607346126 41.0 36.0 41.0 35.0 41.0 32 38.623292205570685 41.0 36.0 41.0 35.0 41.0 33 38.55008419565382 41.0 36.0 41.0 35.0 41.0 34 38.42293098622213 40.0 36.0 41.0 35.0 41.0 35 38.33614503867668 40.0 35.0 41.0 35.0 41.0 36 38.284772360721725 40.0 35.0 41.0 35.0 41.0 37 38.214227954734284 40.0 35.0 41.0 35.0 41.0 38 38.15031034651288 40.0 35.0 41.0 35.0 41.0 39 38.061676093321665 40.0 35.0 41.0 35.0 41.0 40 37.98017958777452 40.0 35.0 41.0 35.0 41.0 41 37.92733404125809 40.0 35.0 41.0 35.0 41.0 42 37.858349143159266 40.0 35.0 41.0 35.0 41.0 43 37.794324901919836 40.0 35.0 41.0 35.0 41.0 44 37.657876847750266 40.0 35.0 41.0 35.0 41.0 45 37.658261170919396 40.0 35.0 41.0 35.0 41.0 46 37.60180343091736 40.0 35.0 41.0 35.0 41.0 47 37.507566501237385 39.0 35.0 41.0 35.0 41.0 48 37.42263996694376 39.0 35.0 41.0 35.0 41.0 49 37.357360566221324 39.0 35.0 41.0 35.0 41.0 50 37.29846359593195 39.0 35.0 41.0 35.0 41.0 51 37.214538967703525 39.0 35.0 41.0 34.0 41.0 52 36.71184870551959 38.0 35.0 40.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 0.0 14 7.0 15 4.0 16 10.0 17 19.0 18 36.0 19 54.0 20 100.0 21 184.0 22 264.0 23 418.0 24 735.0 25 1196.0 26 1673.0 27 2105.0 28 2101.0 29 2115.0 30 2333.0 31 2811.0 32 3660.0 33 5466.0 34 19116.0 35 70111.0 36 17583.0 37 29454.0 38 52897.0 39 234225.0 40 1462.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.72002612508941 21.915973181795966 23.037619240150885 21.32638145296373 2 27.84121455007531 24.09417472708612 25.49240017594448 22.57221054689409 3 28.116683179974316 25.080752295942172 24.452061793833945 22.350502730249566 4 26.75489067894131 25.900049317770836 22.33761790723816 25.007442096049694 5 25.146953627966283 35.84024596682824 19.93437626349019 19.07842414171528 6 86.58912076633595 3.3940401029008624 6.824513153627078 3.192325977136104 7 85.79137250023327 3.252751354017177 5.897694505289442 5.058181640460122 8 74.3716427260731 6.43907922388935 11.321316384607524 7.867961665430021 9 47.513673463040554 20.87385758271834 16.519453861226012 15.093015093015094 10 35.904892234006155 22.192774724420296 25.882499300220818 16.01983374135273 11 34.821678492564565 18.328660733724025 26.86196800120851 19.9876927725029 12 21.191312963464863 28.327505542695413 29.63731444744103 20.843867046398692 13 16.379275872946756 31.211928680283112 29.290757138858403 23.118038307911725 14 14.955947234428246 24.357202838215496 39.66015168546814 21.026698241888113 15 17.204348849918468 19.199497047598314 41.50356998458265 22.092584117900575 16 18.420409559650068 21.494106304232886 28.895326363680795 31.190157772436255 17 20.023903568207366 23.32774991002839 31.533827103447354 25.11451941831689 18 23.776497194218713 27.06234921424795 26.75444637469954 22.406707216833798 19 26.421440345490975 23.100710442482594 26.12309004714068 24.35475916488575 20 22.78880886475823 28.629188122859006 26.69913049659885 21.88287251578391 21 21.29172572210547 24.301664807993923 25.119406764976386 29.287202704924226 22 20.507084431135063 28.762701547511675 23.96577080121384 26.764443220139423 23 20.449991336067285 22.36405400962363 33.67781722212102 23.508137432188065 24 20.006575702778235 23.281542268884042 31.539603058590398 25.172278969747325 25 19.944150956809185 27.504654086932568 28.3423897347948 24.20880522146345 26 20.71257514295489 26.628708274277894 27.324710869014666 25.33400571375255 27 23.12314780669211 24.993446512433852 32.12430744076314 19.759098240110898 28 20.770112542264442 24.62089740570753 28.734488228159115 25.87450182386891 29 22.034380262228364 25.61058510425599 28.20021237742757 24.154822256088078 30 26.496749914471433 24.596904976651814 22.88322351613491 26.023121592741845 31 28.096023032731892 24.04130252231518 25.132513740108674 22.73016070484425 32 26.11820270048118 25.76542513251374 25.47596091899889 22.640411248006185 33 24.435400384767473 23.19179281204598 26.36079281648902 26.01201398669753 34 25.97380382190509 22.924321658498872 28.185994641690844 22.915879877905194 35 30.086728187994012 22.948314087554593 24.00709109569869 22.957866628752704 36 24.84371598295649 27.06168275788529 25.553269857067324 22.541331402090893 37 25.019216158456665 25.25669677568412 26.712681775972914 23.0114052898863 38 25.085195338359895 24.326767997654073 25.48973435049384 25.098302313492187 39 29.14702471664497 21.336378298403616 27.22807469642913 22.288522288522287 40 21.19975474405854 20.15874990558535 30.631223036286325 28.010272314069784 41 24.00309235752274 24.97034269186168 25.10829915893207 25.918265791683513 42 24.993890816675627 22.231651345575397 27.11388850629357 25.660569331455406 43 25.139178303735264 25.751873853139678 26.482087874492937 22.62685996863212 44 20.895184186323426 26.855525589702804 27.389357136192576 24.85993308778119 45 23.587445739344474 25.02277059239085 26.320583282608602 25.06920038565608 46 25.32245380346646 22.37782744111858 28.18688325017439 24.112835505240568 47 25.157172625527057 20.605275668566808 29.70018349765185 24.537368208254286 48 22.612642232895396 20.155639775892944 28.13423319752434 29.09748479368732 49 21.908420009685834 23.543681771529872 30.063624367421838 24.48427385136246 50 21.787124951681914 24.267453381377432 27.399353981632462 26.546067685308188 51 22.095027791230322 21.695820429997646 29.90522990522991 26.303921873542123 52 23.889350471628955 20.105655548693523 31.328114239506643 24.67687974017088 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 67.0 1 173.5 2 280.0 3 1037.5 4 1795.0 5 1241.0 6 687.0 7 675.5 8 664.0 9 668.0 10 672.0 11 666.0 12 660.0 13 654.0 14 630.5 15 613.0 16 619.5 17 626.0 18 591.5 19 557.0 20 586.5 21 616.0 22 747.0 23 878.0 24 1088.5 25 1299.0 26 1638.0 27 1977.0 28 2868.5 29 3760.0 30 4229.5 31 4699.0 32 5089.5 33 5480.0 34 6133.5 35 6787.0 36 7341.5 37 7896.0 38 9301.5 39 12013.0 40 13319.0 41 16615.5 42 19912.0 43 23512.5 44 27113.0 45 30087.5 46 33062.0 47 34007.5 48 34953.0 49 39774.5 50 44596.0 51 46334.5 52 48073.0 53 43168.0 54 38263.0 55 32985.5 56 27708.0 57 24495.5 58 21283.0 59 19981.0 60 18679.0 61 18706.5 62 18734.0 63 18077.5 64 14410.5 65 11400.0 66 9626.0 67 7852.0 68 6648.0 69 5444.0 70 4708.5 71 3973.0 72 3240.5 73 2508.0 74 2339.5 75 2171.0 76 1740.0 77 1309.0 78 977.0 79 645.0 80 434.5 81 224.0 82 157.5 83 91.0 84 55.5 85 20.0 86 18.5 87 17.0 88 9.5 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 450142.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.809323379104846 #Duplication Level Percentage of deduplicated Percentage of total 1 71.30515433633143 21.255584042086834 2 8.980381191596033 5.353981740158341 3 3.095607057019088 2.7683385545196315 4 1.7503236706186962 2.08703857262298 5 1.2964395343004376 1.9322992659708917 6 1.0648989833888967 1.904635089715177 7 0.9306060952690929 1.941851662270971 8 0.9175803232509758 2.1881958865673514 9 0.8456381455472534 2.268711084809214 >10 9.622551404993493 50.68365446116668 >50 0.13394763578647415 2.674566022815448 >100 0.050885135382571195 3.0276801190720666 >500 0.0029932432577983053 0.635293080315129 >1k 0.0029932432577983053 1.278170417909301 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT 1637 0.36366302189086996 Illumina Single End Adapter 2 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1534 0.34078135343958127 No Hit CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCTT 1454 0.32300918376867743 Illumina Single End Adapter 2 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT 1105 0.24547809357935937 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 933 0.20726792878691613 No Hit TGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCTTG 802 0.17816600095081106 Illumina Single End Adapter 2 (95% over 23bp) GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 593 0.13173620768557479 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 520 0.11551910286087502 No Hit GGACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTG 451 0.10019060651972045 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3292294431534938 0.0 2 0.0 0.0 0.0 1.1012080632333796 0.0 3 0.0 0.0 0.0 1.7187909592972883 0.0 4 0.0 0.0 0.0 2.126217949002759 0.0 5 0.0 0.0 0.0 4.220223840477005 0.0 6 0.0 0.0 0.0 4.656974910139467 0.0 7 0.0 0.0 0.0 6.732320023459264 0.0 8 0.0 0.0 0.0 8.916741828134233 0.0 9 0.0 0.0 0.0 11.197133349032082 0.0 10 0.0 0.0 0.0 12.119286802831107 0.0 11 0.0 0.0 0.0 12.978571206419307 0.0 12 0.0 0.0 0.0 13.720559290179544 0.0 13 0.0 0.0 0.0 14.01846528428807 0.0 14 0.0 0.0 0.0 14.237951579723731 0.0 15 0.0 0.0 0.0 14.971942187132061 0.0 16 0.0 0.0 0.0 15.751696131442968 0.0 17 0.0 0.0 0.0 16.738495852419902 0.0 18 0.0 0.0 0.0 17.21279063051215 0.0 19 0.0 0.0 0.0 17.803715272069702 0.0 20 4.443042417725962E-4 0.0 0.0 18.453954529903896 0.0 21 4.443042417725962E-4 0.0 0.0 19.06176273264881 0.0 22 4.443042417725962E-4 0.0 0.0 19.702227297164008 0.0 23 4.443042417725962E-4 0.0 0.0 20.15919420982712 0.0 24 4.443042417725962E-4 0.0 0.0 20.577728805576907 0.0 25 4.443042417725962E-4 0.0 0.0 20.975825406205153 0.0 26 4.443042417725962E-4 0.0 0.0 21.345264383239066 0.0 27 4.443042417725962E-4 0.0 0.0 21.722700836624888 0.0 28 4.443042417725962E-4 0.0 0.0 22.088363227603732 0.0 29 4.443042417725962E-4 0.0 0.0 22.556437746311165 0.0 30 4.443042417725962E-4 0.0 0.0 23.0000755317211 0.0 31 4.443042417725962E-4 0.0 0.0 23.409724042635435 0.0 32 4.443042417725962E-4 0.0 0.0 23.78560543117505 0.0 33 4.443042417725962E-4 0.0 0.0 24.13305134824122 0.0 34 4.443042417725962E-4 0.0 0.0 24.585353066365723 0.0 35 4.443042417725962E-4 0.0 0.0 24.965233193081293 0.0 36 4.443042417725962E-4 0.0 0.0 25.37776968156715 0.0 37 6.664563626588943E-4 0.0 0.0 25.745209289513088 0.0 38 6.664563626588943E-4 0.0 0.0 26.089322924765963 0.0 39 6.664563626588943E-4 0.0 0.0 26.480532809646732 0.0 40 6.664563626588943E-4 0.0 0.0 26.86352306605471 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGCGG 70 0.0 46.000004 1 CTAGACG 25 3.4138207E-5 46.0 25 ACCGCTA 25 3.4138207E-5 46.0 21 CCTACGG 20 6.307344E-4 46.0 1 TACGGGA 65 0.0 46.0 3 GCCGATG 20 6.307344E-4 46.0 8 TCTACCG 20 6.307344E-4 46.0 35 CTCGCGG 40 5.5988494E-9 46.0 1 CTCGAGG 45 3.092282E-10 46.0 1 AGTCGGC 20 6.307344E-4 46.0 46 CGAAGTT 20 6.307344E-4 46.0 14 ATCAACG 260 0.0 43.346153 14 CGCACTT 235 0.0 43.06383 34 GCACTTA 230 0.0 43.0 35 TACACGG 65 0.0 42.46154 1 CTTATGA 245 0.0 42.2449 25 TTGACGG 60 1.8189894E-12 42.166668 1 GTCATAC 230 0.0 42.0 38 CGTCATA 230 0.0 42.0 37 ACGGGTA 55 4.7293724E-11 41.81818 4 >>END_MODULE