##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544924_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 373824 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.947820364663585 34.0 33.0 34.0 31.0 34.0 2 33.234334874165384 34.0 33.0 34.0 31.0 34.0 3 33.278585644581405 34.0 34.0 34.0 31.0 34.0 4 36.55968049135422 37.0 37.0 37.0 35.0 37.0 5 36.548552259887 37.0 37.0 37.0 35.0 37.0 6 36.67163692004794 37.0 37.0 37.0 35.0 37.0 7 36.50824719654169 37.0 37.0 37.0 35.0 37.0 8 36.54799852336929 37.0 37.0 37.0 35.0 37.0 9 38.339301382468754 39.0 39.0 39.0 37.0 39.0 10 38.09010924927239 39.0 39.0 39.0 35.0 39.0 11 37.06047765793529 39.0 35.0 39.0 35.0 39.0 12 36.90220531587057 39.0 35.0 39.0 35.0 39.0 13 36.883191020373225 39.0 35.0 39.0 35.0 39.0 14 38.057361218113336 40.0 35.0 41.0 35.0 41.0 15 38.14300044940935 40.0 35.0 41.0 35.0 41.0 16 38.178455636877246 40.0 35.0 41.0 35.0 41.0 17 38.31038670604349 40.0 36.0 41.0 35.0 41.0 18 38.29078924841637 40.0 36.0 41.0 35.0 41.0 19 38.16307139188495 40.0 35.0 41.0 35.0 41.0 20 38.050826057181986 40.0 35.0 41.0 35.0 41.0 21 37.99722061718884 40.0 35.0 41.0 35.0 41.0 22 37.98692165297038 40.0 35.0 41.0 35.0 41.0 23 37.969485640301315 40.0 35.0 41.0 35.0 41.0 24 37.92229230868002 40.0 35.0 41.0 35.0 41.0 25 37.8923343605547 40.0 35.0 41.0 35.0 41.0 26 37.84092514124294 40.0 35.0 41.0 35.0 41.0 27 37.88368858072248 40.0 35.0 41.0 35.0 41.0 28 37.90966337099812 40.0 35.0 41.0 35.0 41.0 29 37.93021047337785 40.0 35.0 41.0 35.0 41.0 30 37.809549413627806 40.0 35.0 41.0 35.0 41.0 31 37.713188559322035 40.0 35.0 41.0 35.0 41.0 32 37.660190356959426 39.0 35.0 41.0 35.0 41.0 33 37.596676510871426 39.0 35.0 41.0 35.0 41.0 34 37.508873159561716 39.0 35.0 41.0 35.0 41.0 35 37.438224940078754 39.0 35.0 41.0 35.0 41.0 36 37.3714903269988 39.0 35.0 41.0 35.0 41.0 37 37.33837581321691 39.0 35.0 41.0 35.0 41.0 38 37.32769699109741 39.0 35.0 41.0 35.0 41.0 39 37.23869253980483 39.0 35.0 41.0 34.0 41.0 40 37.20373223763054 38.0 35.0 41.0 34.0 41.0 41 37.21604284369115 38.0 35.0 41.0 34.0 41.0 42 37.096355504194484 38.0 35.0 41.0 34.0 41.0 43 37.00390023112481 38.0 35.0 41.0 34.0 41.0 44 36.94392548365006 38.0 35.0 41.0 34.0 41.0 45 36.92716090994693 38.0 35.0 41.0 34.0 41.0 46 36.9496153269988 38.0 35.0 41.0 34.0 41.0 47 36.94113540061633 38.0 35.0 41.0 34.0 41.0 48 36.99794823232323 37.0 35.0 41.0 35.0 41.0 49 36.90326998801575 37.0 35.0 41.0 34.0 41.0 50 36.84045700650574 37.0 35.0 41.0 34.0 41.0 51 36.754606445814076 37.0 35.0 41.0 34.0 41.0 52 36.58472168721109 36.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 3.0 14 8.0 15 9.0 16 10.0 17 8.0 18 31.0 19 53.0 20 101.0 21 182.0 22 277.0 23 464.0 24 755.0 25 1205.0 26 1658.0 27 1942.0 28 1829.0 29 2056.0 30 2393.0 31 3062.0 32 4233.0 33 6106.0 34 19994.0 35 110098.0 36 10853.0 37 14930.0 38 28104.0 39 161930.0 40 1527.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.373116760828626 23.00119842492724 25.75730825201164 20.868376562232495 2 25.2431625577812 24.116696627289848 28.43503894881014 22.205101866118817 3 25.734302773497692 25.889456000684813 26.536551960280775 21.839689265536723 4 25.54517633966786 28.159508217770927 23.740048793014896 22.55526664954631 5 22.879215887690464 36.37701164184215 20.783042287279578 19.96073018318781 6 87.85685242253038 2.753434771443246 6.737662643382983 2.6520501626433832 7 87.49197483307653 2.0627354048964217 5.050237544940934 5.395052217086115 8 78.38153783598699 3.63914569423044 11.24406137647663 6.73525509330594 9 55.0325821777093 16.501348228043145 13.798472008217772 14.66759758602979 10 49.236539120013695 17.356296010957028 24.214603663756208 9.19256120527307 11 48.2470360383496 16.067989214175654 20.58589068652628 15.099084060948467 12 19.24702533812703 41.338437339496664 24.84778933401815 14.56674798835816 13 10.970938195514467 45.074687553501114 25.345082177709294 18.609292073275125 14 9.363497260743022 22.659593819551446 52.51187724704673 15.46503167265879 15 9.758335473377846 16.024118301660675 55.06762540660846 19.14992081835302 16 10.006848142441363 19.34519988015751 29.703817839411062 40.94413413799007 17 16.127107943845232 22.538146293442903 38.25409818524225 23.080647577469612 18 24.166452662215374 28.491482622838554 26.406811761684644 20.935252953261426 19 27.99258474576271 22.409208611539118 25.26884309193631 24.329363550761858 20 16.18863422359185 35.23636791645266 26.414301917479882 22.160695942475602 21 17.954438452319806 25.816694487245336 23.559482537236775 32.66938452319808 22 14.883474576271185 35.82407764081493 20.689682845403183 28.6027649375107 23 14.53143725389488 23.132008645779834 41.49492809450436 20.84162600582092 24 14.163617103235747 24.017987074131142 38.559054528334194 23.25934129429892 25 12.701699195343263 34.521593049135426 30.52024482109228 22.256462934429035 26 16.239192775209723 32.337945129258685 26.951453090224277 24.471409005307308 27 16.538531501455232 28.08968926553672 39.62051660674542 15.751262626262626 28 13.430919363122754 25.283555897962678 35.20694230439993 26.078582434514637 29 16.528901301147066 30.965641585344976 30.119253980482796 22.386203133025166 30 28.064008731381612 24.106263910289332 21.457691319979453 26.3720360383496 31 29.640954031843865 26.66976973121041 23.832338212634824 19.856938024310907 32 23.036509159390516 26.431422273583287 26.046214261256633 24.48585430576956 33 16.335227272727273 27.354583975346685 27.2834274952919 29.02676125663414 34 14.7221687211094 24.07015065913371 31.654200907378872 29.553479712378017 35 29.761064030131827 23.83822333504537 25.55320150659134 20.847511128231467 36 19.820557267591166 27.151814757746962 28.716989813388118 24.310638161273754 37 20.336040489642183 31.070771272042457 24.51073232323232 24.082455915083035 38 15.96419705529875 30.559300633453173 24.536947868515664 28.93955444273241 39 24.436633281972263 23.627161444958055 25.716647406266052 26.219557866803626 40 12.942989214175654 18.92307609998288 30.401739856189007 37.73219482965246 41 20.34620570107858 23.94469054956343 24.76058252011642 30.948521229241564 42 20.526771956856702 23.17721708611539 26.656929464132855 29.639081492895052 43 22.056101266906353 29.071434685841464 28.213544341722308 20.658919705529875 44 14.373073959938369 34.1642056154768 26.255671117959256 25.207049306625578 45 21.26321477486732 31.5798343605547 25.423193802431094 21.733757062146893 46 22.20536937168293 22.897138760486218 27.6472350624893 27.25025680534155 47 22.420978856360215 19.41073874336586 31.278623095360388 26.889659304913543 48 19.35509758602979 17.575650573531927 29.952330508474578 33.1169213319637 49 19.214924670433145 27.225111282314675 28.838704845060775 24.721259202191405 50 18.74384737202534 29.626508731381612 24.8946028077384 26.73504108885465 51 17.577255606916626 21.712891628145865 32.540714346858415 28.169138418079097 52 22.731552816298578 19.908566598185242 32.26732366033214 25.092556925184045 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 78.0 1 99.0 2 120.0 3 590.0 4 1060.0 5 750.5 6 441.0 7 543.0 8 645.0 9 684.0 10 723.0 11 754.0 12 785.0 13 752.5 14 675.5 15 631.0 16 624.5 17 618.0 18 546.0 19 474.0 20 580.0 21 686.0 22 604.5 23 523.0 24 665.5 25 808.0 26 910.0 27 1012.0 28 1659.5 29 2307.0 30 2688.5 31 3070.0 32 3372.5 33 3675.0 34 4393.5 35 5112.0 36 5630.5 37 6149.0 38 6608.5 39 9293.5 40 11519.0 41 17011.5 42 22504.0 43 31635.5 44 40767.0 45 45152.0 46 49537.0 47 51575.5 48 53614.0 49 50426.0 50 47238.0 51 41266.5 52 35295.0 53 29387.5 54 23480.0 55 18631.5 56 13783.0 57 11930.5 58 10078.0 59 9281.0 60 8484.0 61 8139.5 62 7795.0 63 6637.0 64 4308.5 65 3138.0 66 2472.5 67 1807.0 68 1414.5 69 1022.0 70 744.0 71 466.0 72 542.0 73 618.0 74 461.5 75 305.0 76 205.5 77 106.0 78 77.0 79 48.0 80 35.0 81 22.0 82 16.5 83 11.0 84 7.0 85 3.0 86 1.5 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 373824.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.967364321177882 #Duplication Level Percentage of deduplicated Percentage of total 1 72.11948486082242 18.006334531758263 2 10.89313647759659 5.439458140729327 3 3.755330319069149 2.812821006676939 4 1.708916364883108 1.7066854990583806 5 1.0232069770930208 1.277339068652628 6 0.6964235969743073 1.0432717000513612 7 0.5174963035978314 0.9044363122752953 8 0.4499967857372447 0.8988186954288648 9 0.37392590052928193 0.8402349768875192 >10 7.667088092227912 50.378787878787875 >50 0.6749951786058671 10.9375 >100 0.1135706173527332 4.288916709467557 >500 0.003214262755266034 0.47107729840780693 >1k 0.003214262755266034 0.9943181818181818 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTT 1315 0.3517698168121897 TruSeq Adapter, Index 16 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 1314 0.35150231124807396 TruSeq Adapter, Index 13 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 1088 0.2910460537579182 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 691 0.18484634480397194 No Hit ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 559 0.1495356103406951 TruSeq Adapter, Index 16 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 511 0.13669534326313987 TruSeq Adapter, Index 13 (95% over 22bp) ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 451 0.12064500941619585 No Hit GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA 392 0.10486218113336758 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 374 0.10004708097928437 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.35551489470980996 0.0 2 0.0 0.0 0.0 1.2425633453175826 0.0 3 0.0 0.0 0.0 2.0592578325629174 0.0 4 0.0 0.0 0.0 2.53060263653484 0.0 5 0.0 0.0 0.0 5.150284625920219 0.0 6 0.0 0.0 0.0 5.750032100667694 0.0 7 0.0 0.0 0.0 9.037407978085945 0.0 8 0.0 0.0 0.0 12.368119756890943 0.0 9 0.0 0.0 0.0 16.1452983222051 0.0 10 0.0 0.0 0.0 17.255446413285398 0.0 11 0.0 0.0 0.0 18.326271186440678 0.0 12 0.0 0.0 0.0 19.210109570279062 0.0 13 0.0 0.0 0.0 19.49794555726759 0.0 14 0.0 0.0 0.0 19.722115219996574 0.0 15 0.0 0.0 0.0 20.544427324088343 0.0 16 2.675055641157336E-4 0.0 0.0 21.383592278719398 0.0 17 2.675055641157336E-4 0.0 0.0 22.810199452148606 0.0 18 2.675055641157336E-4 0.0 0.0 23.252653655196028 0.0 19 2.675055641157336E-4 0.0 0.0 23.93666538263996 0.0 20 2.675055641157336E-4 0.0 0.0 24.63833247731553 0.0 21 2.675055641157336E-4 0.0 0.0 25.200361667522685 0.0 22 2.675055641157336E-4 0.0 0.0 25.902831278890602 0.0 23 2.675055641157336E-4 0.0 0.0 26.34876305427153 0.0 24 2.675055641157336E-4 0.0 0.0 26.705882982366035 0.0 25 2.675055641157336E-4 0.0 0.0 27.10687382297552 0.0 26 2.675055641157336E-4 0.0 0.0 27.43082306111967 0.0 27 2.675055641157336E-4 0.0 0.0 27.771357644239 0.0 28 2.675055641157336E-4 0.0 0.0 28.100656993665467 0.0 29 2.675055641157336E-4 0.0 0.0 28.62042030474234 0.0 30 2.675055641157336E-4 0.0 0.0 29.10246533127889 0.0 31 2.675055641157336E-4 0.0 0.0 29.44620998116761 0.0 32 2.675055641157336E-4 0.0 0.0 29.753038863208356 0.0 33 2.675055641157336E-4 0.0 0.0 30.069765451121384 0.0 34 2.675055641157336E-4 0.0 0.0 30.611999229583976 0.0 35 2.675055641157336E-4 0.0 0.0 30.988914569423045 0.0 36 2.675055641157336E-4 0.0 0.0 31.362619842492723 0.0 37 5.350111282314672E-4 0.0 0.0 31.684696541688066 0.0 38 5.350111282314672E-4 0.0 0.0 31.976545112138332 0.0 39 8.025166923472008E-4 0.0 0.0 32.32911744564287 0.0 40 8.025166923472008E-4 0.0 0.0 32.72128060263653 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATATG 20 6.3059625E-4 46.000004 18 AATCCTC 20 6.3059625E-4 46.000004 13 GTCGCAA 20 6.3059625E-4 46.000004 4 GTACCCA 20 6.3059625E-4 46.000004 19 AATTTCT 20 6.3059625E-4 46.000004 30 GTACAAC 20 6.3059625E-4 46.000004 46 TTTACGG 40 5.5933924E-9 46.000004 1 CGCGGGT 40 5.5933924E-9 46.000004 3 CAACGCA 40 5.5933924E-9 46.000004 16 CAACGAA 20 6.3059625E-4 46.000004 19 ACGTTGG 20 6.3059625E-4 46.000004 33 TTAGCGG 80 0.0 46.000004 1 CCCTAGG 20 6.3059625E-4 46.000004 1 AACCCGG 20 6.3059625E-4 46.000004 1 GCAACGA 20 6.3059625E-4 46.000004 18 GACGTTC 20 6.3059625E-4 46.000004 38 CGTTGGT 20 6.3059625E-4 46.000004 34 GGCAACG 20 6.3059625E-4 46.000004 7 CCGGATA 20 6.3059625E-4 46.000004 19 GCCGGAT 20 6.3059625E-4 46.000004 18 >>END_MODULE