##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544923_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 214852 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.95220430808184 34.0 33.0 34.0 31.0 34.0 2 33.275971366335895 34.0 33.0 34.0 31.0 34.0 3 33.38814625882002 34.0 34.0 34.0 31.0 34.0 4 36.62255878465176 37.0 37.0 37.0 35.0 37.0 5 36.60849328840318 37.0 37.0 37.0 35.0 37.0 6 36.44404054884293 37.0 37.0 37.0 35.0 37.0 7 36.27687896784764 37.0 37.0 37.0 35.0 37.0 8 36.4145644443617 37.0 37.0 37.0 35.0 37.0 9 38.2860899596001 39.0 39.0 39.0 37.0 39.0 10 38.099677917822504 39.0 39.0 39.0 35.0 39.0 11 37.151341388490685 39.0 35.0 39.0 35.0 39.0 12 37.0685262413196 39.0 35.0 39.0 35.0 39.0 13 37.0655288291475 39.0 35.0 39.0 35.0 39.0 14 38.200673021428706 40.0 35.0 41.0 35.0 41.0 15 38.26087260067395 40.0 35.0 41.0 35.0 41.0 16 38.31723232736954 40.0 35.0 41.0 35.0 41.0 17 38.45655148660473 40.0 36.0 41.0 35.0 41.0 18 38.44290488336157 40.0 36.0 41.0 35.0 41.0 19 38.33973619049392 40.0 35.0 41.0 35.0 41.0 20 38.230381844246274 40.0 35.0 41.0 35.0 41.0 21 38.17189507195651 40.0 35.0 41.0 35.0 41.0 22 38.16108763241673 40.0 35.0 41.0 35.0 41.0 23 38.1313508833988 40.0 35.0 41.0 35.0 41.0 24 38.101735147915775 40.0 35.0 41.0 35.0 41.0 25 38.069764302868954 40.0 35.0 41.0 35.0 41.0 26 38.01111928211048 40.0 35.0 41.0 35.0 41.0 27 38.141855789101335 40.0 35.0 41.0 35.0 41.0 28 38.17093161804405 40.0 35.0 41.0 35.0 41.0 29 38.189735259620576 40.0 35.0 41.0 35.0 41.0 30 38.09623368644462 40.0 35.0 41.0 35.0 41.0 31 37.99435425316032 40.0 35.0 41.0 35.0 41.0 32 37.95966991231173 40.0 35.0 41.0 35.0 41.0 33 37.91223726099827 40.0 35.0 41.0 35.0 41.0 34 37.820192504607824 40.0 35.0 41.0 35.0 41.0 35 37.75561782063932 40.0 35.0 41.0 35.0 41.0 36 37.711917971440805 40.0 35.0 41.0 35.0 41.0 37 37.6450905739765 40.0 35.0 41.0 35.0 41.0 38 37.65123899242269 40.0 35.0 41.0 35.0 41.0 39 37.58721352372796 40.0 35.0 41.0 35.0 41.0 40 37.571630703926424 40.0 35.0 41.0 35.0 41.0 41 37.56160519799676 40.0 35.0 41.0 35.0 41.0 42 37.48218308416957 39.0 35.0 41.0 35.0 41.0 43 37.41176716995886 39.0 35.0 41.0 35.0 41.0 44 37.290250963453914 39.0 35.0 41.0 35.0 41.0 45 37.30749073781021 39.0 35.0 41.0 35.0 41.0 46 37.25195017965856 39.0 35.0 41.0 35.0 41.0 47 37.21482229627837 38.0 35.0 41.0 35.0 41.0 48 37.22158974549923 38.0 35.0 41.0 35.0 41.0 49 37.14015694524603 38.0 35.0 41.0 35.0 41.0 50 37.070676558747415 38.0 35.0 41.0 35.0 41.0 51 37.01420047288366 38.0 35.0 41.0 34.0 41.0 52 36.61876082140264 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 1.0 15 3.0 16 2.0 17 11.0 18 7.0 19 28.0 20 54.0 21 79.0 22 127.0 23 213.0 24 385.0 25 669.0 26 931.0 27 1004.0 28 935.0 29 953.0 30 1062.0 31 1299.0 32 1847.0 33 2914.0 34 10433.0 35 60961.0 36 5724.0 37 8391.0 38 16082.0 39 99666.0 40 1070.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.637611006646438 22.53504738145328 25.19175990914676 22.635581702753523 2 24.952990896058683 24.495466646808033 28.376277623666525 22.17526483346676 3 25.63764824158025 25.824753784000148 26.625770297693297 21.911827676726308 4 25.37514195818517 28.04069778265969 23.996983970360994 22.587176288794147 5 23.126151955764897 35.842812726900384 20.974903654608752 20.05613166272597 6 86.57820266974475 2.7242008452329975 7.455364623089382 3.242231861932866 7 85.98290916537896 1.9157373447768695 5.818889281924301 6.282464207919871 8 76.15474838493475 3.682069517621432 12.669186230521476 7.493995866922347 9 53.878018356822366 15.956565449704913 14.7599277642284 15.405488429244318 10 47.7826596913224 17.014503006720904 25.807067190438072 9.395770111518626 11 46.84759741589559 15.73827565021503 21.405432576843594 16.00869435704578 12 18.65935620799434 39.665444119673076 26.392121088004767 15.283078584327816 13 11.02060953586655 43.33820490384078 26.1119282110476 19.52925734924506 14 9.180738368737549 22.110103699290676 52.3160128832871 16.393145048684676 15 9.62383408113492 15.933293616070598 54.64691974010017 19.795952562694318 16 9.708078118891143 19.888574460558896 30.559641055238025 39.84370636531194 17 15.614004058607787 22.589968908830265 38.71362612402957 23.082400908532385 18 23.59438124848733 29.034405078844973 26.643456891255372 20.72775678141232 19 27.267607469327725 22.730530783981532 25.12473702827993 24.877124718410812 20 15.842998901569452 36.03643438273789 25.791242343566733 22.329324372125928 21 17.56697633719956 26.084932884031797 23.484072757060677 32.86401802170797 22 14.722227393740809 36.886787183735784 20.502485431832145 27.88849999069127 23 14.280527991361494 23.536667101074226 40.874648595312124 21.308156312252155 24 14.419228119822018 24.4898814067358 37.67290972390296 23.41798074953922 25 12.717591644480851 33.760449053301805 31.023215981233594 22.498743320983746 26 16.591421071249044 30.69042876026288 26.920391711503733 25.797758456984344 27 16.999609033194943 27.326717926758885 39.685457896598585 15.988215143447581 28 14.020814328002531 25.176400498948116 34.73833150261576 26.0644536704336 29 16.9195539254929 29.918734756948968 30.09187719918828 23.069834118369855 30 27.66509038780184 23.60089736190494 20.687729227561295 28.046283022731927 31 29.612477426321377 26.476365125760985 23.21830841695679 20.692849030960847 32 22.116154376035595 25.228994842961665 26.743991212555617 25.910859568447115 33 16.024519203917116 26.444249995345633 28.032319922551334 29.498910878185914 34 14.610522592296093 23.51013721073111 32.00621823394709 29.87312196302571 35 29.044644685644073 23.96347252992758 25.84104406754417 21.15083871688418 36 19.970491314951687 26.19058700873159 28.21523653491706 25.623685141399662 37 20.72915309143038 30.81656209856087 24.585295924636494 23.868988885372254 38 15.69312829296446 30.360434159328282 23.740062927038146 30.206374620669113 39 24.01280881723233 23.575763781579877 25.90061996164802 26.510807439539775 40 13.199318600711187 18.266527656247092 29.53102600860127 39.003127734440454 41 20.324223186193286 24.133822352130768 24.249250646956973 31.29270381471897 42 20.187384804423512 23.34816524863627 26.595051477296 29.86939846964422 43 22.974419600469158 28.55547074265076 27.906652020926032 20.56345763595405 44 14.405265019641428 32.44931394634446 27.361160240537675 25.784260793476438 45 21.134548433340157 30.93943738015006 25.738647999553184 22.187366186956602 46 22.49083089754808 21.403570830152848 28.32135609628954 27.78424217600953 47 22.139891646342598 18.13527451454955 31.535661757861227 28.189172081246628 48 18.94187626831493 16.831586394355185 29.86427866624467 34.36225867108521 49 18.893470854355556 25.880606184722506 29.551970658872158 25.673952302049784 50 18.826913410161414 28.635991287025487 25.632528438180703 26.904566864632397 51 17.306331800495226 20.62954964347551 32.875653938525126 29.188464617504145 52 22.647217619570682 19.41848342114572 32.62664531863795 25.307653640645654 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 43.0 1 66.0 2 89.0 3 362.0 4 635.0 5 443.5 6 252.0 7 308.0 8 364.0 9 419.5 10 475.0 11 468.0 12 461.0 13 451.5 14 408.0 15 374.0 16 372.0 17 370.0 18 328.0 19 286.0 20 324.0 21 362.0 22 335.5 23 309.0 24 379.0 25 449.0 26 533.5 27 618.0 28 862.0 29 1106.0 30 1249.0 31 1392.0 32 1659.0 33 1926.0 34 2297.5 35 2669.0 36 2899.0 37 3129.0 38 3570.0 39 5052.5 40 6094.0 41 9023.0 42 11952.0 43 17045.0 44 22138.0 45 24866.5 46 27595.0 47 29548.5 48 31502.0 49 30076.0 50 28650.0 51 25131.0 52 21612.0 53 18150.0 54 14688.0 55 11433.5 56 8179.0 57 7040.5 58 5902.0 59 5364.5 60 4827.0 61 4605.5 62 4384.0 63 3827.0 64 2512.0 65 1754.0 66 1379.5 67 1005.0 68 798.5 69 592.0 70 448.5 71 305.0 72 324.5 73 344.0 74 250.5 75 157.0 76 118.5 77 80.0 78 57.0 79 34.0 80 25.5 81 17.0 82 13.0 83 9.0 84 4.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 214852.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.08396477575261 #Duplication Level Percentage of deduplicated Percentage of total 1 72.63444520081688 21.851320909277085 2 9.370938795717557 5.638299852922011 3 3.0555727458382327 2.757712285666412 4 1.5038059285846896 1.80961778340439 5 1.1185716937929329 1.6825535717610263 6 0.8106937310477134 1.4633328989257721 7 0.7178662045918683 1.511738312885149 8 0.6931121975369764 1.6681250349077505 9 0.6977535738597685 1.8892074544337496 >10 9.149699857664459 52.01068642600488 >50 0.20267343276192834 3.967847634650829 >100 0.038678136023268764 2.2136168152961107 >500 0.004641376322792252 1.0225643698918325 >1k 0.0015471254409307506 0.5133766499730047 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 1103 0.5133766499730047 TruSeq Adapter, Index 13 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTT 988 0.4598514326140785 TruSeq Adapter, Index 16 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 662 0.3081190773183401 TruSeq Adapter, Index 13 (95% over 22bp) TGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTTG 547 0.2545938599594139 TruSeq Adapter, Index 13 (95% over 24bp) ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 470 0.2187552361625677 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 420 0.195483402528252 No Hit ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 325 0.15126691862305217 TruSeq Adapter, Index 16 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 309 0.1438199318600711 TruSeq Adapter, Index 13 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 235 0.10937761808128385 TruSeq Adapter, Index 16 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 232 0.10798130806322491 TruSeq Adapter, Index 16 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 226 0.10518868802710704 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4686947293951185 0.0 2 0.0 0.0 0.0 1.5522313034088582 0.0 3 0.0 0.0 0.0 2.45238582838419 0.0 4 0.0 0.0 0.0 3.0230111890976112 0.0 5 0.0 0.0 0.0 5.950607860294529 0.0 6 0.0 0.0 0.0 6.624560162344311 0.0 7 0.0 0.0 0.0 10.440675441699403 0.0 8 0.0 0.0 0.0 14.197214826950646 0.0 9 0.0 0.0 0.0 18.54346247649545 0.0 10 0.0 0.0 0.0 19.757321318861354 0.0 11 0.0 0.0 0.0 20.95907880773742 0.0 12 0.0 0.0 0.0 21.963956584067173 0.0 13 0.0 0.0 0.0 22.27207566138551 0.0 14 0.0 0.0 0.0 22.521549717945376 0.0 15 0.0 0.0 0.0 23.38633105579655 0.0 16 0.0 0.0 0.0 24.24878521028429 0.0 17 0.0 0.0 0.0 25.655800271815018 0.0 18 0.0 0.0 0.0 26.112393647720292 0.0 19 0.0 0.0 0.0 26.754230819354717 0.0 20 0.0 0.0 0.0 27.470537858618957 0.0 21 0.0 0.0 0.0 28.091430379982498 0.0 22 4.654366726863143E-4 0.0 0.0 28.848230409770448 0.0 23 4.654366726863143E-4 0.0 0.0 29.3122707724387 0.0 24 4.654366726863143E-4 0.0 0.0 29.67856943384283 0.0 25 4.654366726863143E-4 0.0 0.0 30.067209055535905 0.0 26 4.654366726863143E-4 0.0 0.0 30.415821123377953 0.0 27 4.654366726863143E-4 0.0 0.0 30.758847951147768 0.0 28 4.654366726863143E-4 0.0 0.0 31.080930128646695 0.0 29 4.654366726863143E-4 0.0 0.0 31.584067171820603 0.0 30 4.654366726863143E-4 0.0 0.0 32.06067432465139 0.0 31 4.654366726863143E-4 0.0 0.0 32.41626794258373 0.0 32 4.654366726863143E-4 0.0 0.0 32.752313220263254 0.0 33 4.654366726863143E-4 0.0 0.0 33.08835849794277 0.0 34 4.654366726863143E-4 0.0 0.0 33.650140561875155 0.0 35 4.654366726863143E-4 0.0 0.0 34.00107981308063 0.0 36 4.654366726863143E-4 0.0 0.0 34.37110196786625 0.0 37 4.654366726863143E-4 0.0 0.0 34.661534451622515 0.0 38 4.654366726863143E-4 0.0 0.0 34.95848304879638 0.0 39 4.654366726863143E-4 0.0 0.0 35.29685550983933 0.0 40 4.654366726863143E-4 0.0 0.0 35.66268873457077 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGGG 35 1.0143776E-7 46.000004 2 CTACGAA 35 1.0143776E-7 46.000004 11 TACGAAT 35 1.0143776E-7 46.000004 12 CGGGCAC 35 1.0143776E-7 46.000004 5 CGGGATG 35 1.0143776E-7 46.000004 5 CGAATAT 35 1.0143776E-7 46.000004 14 GCTACGA 35 1.0143776E-7 46.000004 10 AGCTACG 35 1.0143776E-7 46.000004 9 CTAGCGG 70 0.0 46.000004 1 AGTCCGG 20 6.299947E-4 46.0 1 ACAAAGG 30 1.8542942E-6 46.0 1 ACCGGGT 20 6.299947E-4 46.0 3 ATGATGG 25 3.4078228E-5 46.0 1 AGTCAGG 25 3.4078228E-5 46.0 1 TTTACTC 20 6.299947E-4 46.0 37 TACTTAA 25 3.4078228E-5 46.0 33 CTCCGGG 30 1.8542942E-6 46.0 2 GGATGTT 25 3.4078228E-5 46.0 7 TTTACGG 30 1.8542942E-6 46.0 1 CACGGGA 45 3.074092E-10 46.0 3 >>END_MODULE