##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544915_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 574677 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.88268192393292 34.0 33.0 34.0 31.0 34.0 2 33.239837334711495 34.0 33.0 34.0 31.0 34.0 3 33.36971028943215 34.0 34.0 34.0 31.0 34.0 4 36.60576114930648 37.0 37.0 37.0 35.0 37.0 5 36.60580639211244 37.0 37.0 37.0 35.0 37.0 6 36.400435375001955 37.0 37.0 37.0 35.0 37.0 7 36.279957262949445 37.0 37.0 37.0 35.0 37.0 8 36.401373293171645 37.0 37.0 37.0 35.0 37.0 9 38.267687761995 39.0 39.0 39.0 37.0 39.0 10 38.22638630047835 39.0 39.0 39.0 35.0 39.0 11 37.759250848737636 39.0 37.0 39.0 35.0 39.0 12 37.75221385230312 39.0 37.0 39.0 35.0 39.0 13 37.74432768320291 39.0 37.0 39.0 35.0 39.0 14 39.05731393461023 41.0 38.0 41.0 35.0 41.0 15 39.05080767109176 41.0 38.0 41.0 35.0 41.0 16 39.08232450576585 41.0 38.0 41.0 35.0 41.0 17 39.15972450611387 41.0 38.0 41.0 35.0 41.0 18 39.16571917790341 41.0 38.0 41.0 35.0 41.0 19 39.12785964985549 41.0 38.0 41.0 35.0 41.0 20 39.07284787802539 41.0 38.0 41.0 35.0 41.0 21 39.056939811407105 41.0 38.0 41.0 35.0 41.0 22 39.032771452485484 41.0 38.0 41.0 35.0 41.0 23 38.999203030571955 41.0 37.0 41.0 35.0 41.0 24 38.98019931196133 41.0 37.0 41.0 35.0 41.0 25 38.933781933155494 41.0 37.0 41.0 35.0 41.0 26 38.85774965763377 41.0 37.0 41.0 35.0 41.0 27 38.94063273804241 41.0 37.0 41.0 35.0 41.0 28 38.94189257617757 41.0 37.0 41.0 35.0 41.0 29 38.9554636778573 41.0 37.0 41.0 35.0 41.0 30 38.90695468932983 41.0 37.0 41.0 35.0 41.0 31 38.84462576368986 41.0 37.0 41.0 35.0 41.0 32 38.79417133450617 41.0 37.0 41.0 35.0 41.0 33 38.70772277296638 41.0 37.0 41.0 35.0 41.0 34 38.606032606142236 41.0 37.0 41.0 35.0 41.0 35 38.529861121986784 41.0 36.0 41.0 35.0 41.0 36 38.52854908061398 41.0 36.0 41.0 35.0 41.0 37 38.44721121603962 40.0 36.0 41.0 35.0 41.0 38 38.42664662062341 40.0 36.0 41.0 35.0 41.0 39 38.38525467349485 40.0 36.0 41.0 35.0 41.0 40 38.3359539358631 40.0 36.0 41.0 35.0 41.0 41 38.296357780109524 40.0 36.0 41.0 35.0 41.0 42 38.24829947953372 40.0 35.0 41.0 35.0 41.0 43 38.18700417799912 40.0 35.0 41.0 35.0 41.0 44 37.995820260772575 40.0 35.0 41.0 35.0 41.0 45 38.01436807110777 40.0 35.0 41.0 35.0 41.0 46 37.98052297203473 40.0 35.0 41.0 35.0 41.0 47 37.89549955888264 40.0 35.0 41.0 35.0 41.0 48 37.840807966910106 40.0 35.0 41.0 35.0 41.0 49 37.80575871315539 40.0 35.0 41.0 35.0 41.0 50 37.73204600149301 40.0 35.0 41.0 35.0 41.0 51 37.633345340077994 40.0 35.0 41.0 35.0 41.0 52 37.152724051945704 39.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 0.0 14 3.0 15 3.0 16 8.0 17 19.0 18 32.0 19 70.0 20 133.0 21 199.0 22 317.0 23 516.0 24 825.0 25 1552.0 26 2201.0 27 2571.0 28 2621.0 29 2580.0 30 2965.0 31 3728.0 32 4789.0 33 6868.0 34 20544.0 35 85411.0 36 17012.0 37 27936.0 38 56725.0 39 332991.0 40 2056.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.722127386340503 23.163620607750094 25.762123766916023 20.352128238993384 2 25.979985278686986 24.252928166604892 27.313429978927296 22.45365657578083 3 25.410099934397934 25.243571606311022 26.624695263600252 22.721633195690796 4 25.479008208089066 27.598807678052196 23.886809459922702 23.035374653936035 5 23.289778432058355 34.42055276268234 21.5928251870181 20.696843618241203 6 86.07965866043013 2.163302168000459 8.48389617124054 3.2731430003288806 7 87.11832907876946 1.7143543242551902 5.943860638236783 5.223455958738561 8 74.83038298035244 4.0551475002479656 12.76647577682768 8.347993742571914 9 40.098524910514946 16.81640295331116 17.349920042041006 25.73515209413288 10 32.89204196444263 18.395550892066325 31.374667856900484 17.337739286590555 11 32.79320383450182 18.296538751333358 27.209719546806294 21.700537867358534 12 20.94167680279531 27.12689040974321 31.84223485540573 20.089197932055747 13 16.224592249211295 30.093774415889275 32.27430365231251 21.407329682586916 14 15.657839099180931 24.093882302580404 39.6969080022343 20.551370596004364 15 17.721259072487676 19.781198829951432 41.251172397712104 21.246369699848785 16 17.609718154719957 23.58698886504941 29.211365688900027 29.59192729133061 17 18.815612944314804 23.32005630989234 33.36500329750451 24.499327448288344 18 21.230882739347496 28.747800938614215 29.935772616617683 20.085543705420612 19 23.404103522500467 24.161050468350048 27.145335553711043 25.289510455438446 20 19.649298649502242 31.322290608463536 27.725835556321204 21.302575185713017 21 19.54106393678536 23.860359819516006 28.665841855511882 27.932734388186752 22 17.17764935781317 28.32947899428723 26.573188069124047 27.919683578775555 23 17.323470401634307 23.287864313344713 36.03502489224382 23.353640392777162 24 20.548586423329976 23.498591382637553 31.3069776587544 24.645844535278076 25 17.085075616389727 28.716130974443033 30.042093210620923 24.156700198546314 26 18.144453318994845 26.625913339145296 28.695771711761566 26.5338616300983 27 20.986223565585536 26.67881261995869 31.88382343472942 20.45114037972635 28 18.211447473972335 25.440203801439765 28.98741379940384 27.36093492518406 29 19.62389307384844 29.916805440273407 26.809494724862837 23.64980676101532 30 26.61651675636923 26.393608931625938 22.729985713713965 24.259888598290864 31 24.9256538890542 27.250438072169235 22.883115210805375 24.940792827971194 32 23.670862066865386 29.810136824685866 23.175801363200545 23.3431997452482 33 20.08745782413425 28.95591784602481 24.850481226845687 26.10614310299525 34 22.979169168071802 25.29090254177564 26.802882314761163 24.927045975391394 35 23.639888145862805 28.135804982625025 23.320926363853086 24.903380507659083 36 26.008175027015174 29.82196955855202 22.99047986956151 21.17937554487129 37 22.042469073931965 29.127318476291897 24.576588240002646 24.253624209773488 38 22.57006979572873 26.784437170793336 23.023019887693437 27.622473145784504 39 26.326440765856297 24.283728076815326 24.95366962659024 24.436161530738136 40 20.772016280449712 22.44530405775766 28.60493807825961 28.177741583533013 41 22.511428158774407 25.817111177235212 23.23235487064908 28.4391057933413 42 22.014975368772372 21.98434946935409 28.123798237966717 27.876876923906817 43 23.988953794914362 25.956841843331123 26.26710308573338 23.78710127602114 44 19.412469961387004 29.106611192026126 26.645576558658167 24.835342287928697 45 22.024197940756284 26.59041513754683 25.899244271129696 25.48614265056719 46 25.020141749191282 22.229878697076792 26.21455182650428 26.535427727227646 47 21.785455133927407 21.080537414930475 30.737440336049644 26.396567115092477 48 22.53439758333812 20.264426799750122 27.08303969012158 30.11813592679018 49 21.181985706753533 22.897906128138068 29.988845908223226 25.931262256885173 50 20.807688492840327 23.398535177151686 28.635737988470044 27.158038341537942 51 20.071448831256514 20.93402032794074 29.48038637356289 29.514144467239856 52 21.4242087294254 20.229624641320253 34.01301948746862 24.333147141785734 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 51.0 1 152.5 2 254.0 3 1482.0 4 2710.0 5 1817.0 6 924.0 7 938.0 8 952.0 9 973.5 10 995.0 11 959.5 12 924.0 13 933.5 14 855.5 15 768.0 16 730.5 17 693.0 18 688.5 19 684.0 20 790.0 21 896.0 22 1046.5 23 1197.0 24 1378.0 25 1559.0 26 1915.0 27 2271.0 28 2600.5 29 2930.0 30 3746.5 31 4563.0 32 5306.0 33 6049.0 34 7056.0 35 8063.0 36 8824.5 37 9586.0 38 11413.0 39 14870.0 40 16500.0 41 19985.5 42 23471.0 43 30148.5 44 36826.0 45 40183.0 46 43540.0 47 48921.0 48 54302.0 49 64204.0 50 74106.0 51 75318.0 52 76530.0 53 68092.5 54 59655.0 55 49790.0 56 39925.0 57 33483.5 58 27042.0 59 23851.0 60 20660.0 61 17821.0 62 14982.0 63 13241.0 64 8758.5 65 6017.0 66 4879.0 67 3741.0 68 3089.0 69 2437.0 70 1876.0 71 1315.0 72 1058.5 73 802.0 74 646.0 75 490.0 76 448.0 77 406.0 78 249.5 79 93.0 80 67.0 81 41.0 82 33.0 83 25.0 84 13.5 85 2.0 86 9.5 87 17.0 88 8.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 574677.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.85187046338137 #Duplication Level Percentage of deduplicated Percentage of total 1 71.44694884499283 23.47165908459539 2 12.059880789697132 7.92379283013903 3 4.230079747035393 4.168980956981391 4 1.9987178281699578 2.6264647673556154 5 1.192318088261104 1.9584939693350147 6 0.840931435864487 1.657570235976325 7 0.6584260301820906 1.5141368657282326 8 0.5616599598534705 1.4761264196459352 9 0.4991085919921102 1.4756985730156922 >10 6.2334580593332545 42.088158479153385 >50 0.20247577858693602 4.420505192356668 >100 0.06908622366482617 4.178180500137068 >500 0.003188594938376593 0.7470514106671617 >1k 0.003720027428106025 2.2931807149131034 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 3075 0.535083185859187 No Hit CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCTT 2615 0.45503822147049555 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 2252 0.39187230392028916 No Hit TGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCTTG 1518 0.2641483824826816 Illumina Single End Adapter 1 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1390 0.24187500108756743 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1274 0.22168974919824527 No Hit ACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 1011 0.17592491086297174 No Hit TCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 997 0.1734887597728811 No Hit GCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 718 0.12493974876321828 No Hit ACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 686 0.11937140341443976 No Hit CGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 685 0.11919739262229044 No Hit AGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 666 0.11589118757145318 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4621726639486181 0.0 2 0.0 0.0 0.0 1.7053057630634252 0.0 3 0.0 0.0 0.0 2.7128282496080405 0.0 4 0.0 0.0 0.0 3.309337245095941 0.0 5 0.0 0.0 0.0 6.794077368678406 0.0 6 0.0 0.0 0.0 7.385888072778274 0.0 7 0.0 0.0 0.0 10.083751394261473 0.0 8 0.0 0.0 0.0 12.87244834924662 0.0 9 0.0 0.0 0.0 15.514454206449884 0.0 10 0.0 0.0 0.0 17.00416059804029 0.0 11 0.0 0.0 0.0 18.31689801401483 0.0 12 0.0 0.0 0.0 19.33642724521775 0.0 13 0.0 0.0 0.0 19.743786509639328 0.0 14 0.0 0.0 0.0 20.06309631323335 0.0 15 0.0 0.0 0.0 21.27595153451417 0.0 16 0.0 0.0 0.0 22.700577889840726 0.0 17 0.0 0.0 0.0 24.25588635007143 0.0 18 0.0 0.0 0.0 25.119153889924252 0.0 19 0.0 0.0 0.0 25.98120335423203 0.0 20 0.0 0.0 0.0 27.15090389905982 0.0 21 0.0 0.0 0.0 28.2059313318612 0.0 22 0.0 0.0 0.0 29.318382326071863 0.0 23 0.0 0.0 0.0 30.149805890961357 0.0 24 0.0 0.0 0.0 30.872298699965373 0.0 25 0.0 0.0 0.0 31.546590519544022 0.0 26 0.0 0.0 0.0 32.186080180692805 0.0 27 0.0 0.0 0.0 32.829050057684576 0.0 28 0.0 0.0 0.0 33.49324925131857 0.0 29 0.0 0.0 0.0 34.26081085548926 0.0 30 0.0 0.0 0.0 34.93771283695015 0.0 31 0.0 0.0 0.0 35.52186706619545 0.0 32 0.0 0.0 0.0 36.146217788427236 0.0 33 0.0 0.0 0.0 36.74429288104448 0.0 34 0.0 0.0 0.0 37.46591563608775 0.0 35 0.0 0.0 0.0 38.05111393008595 0.0 36 0.0 0.0 0.0 38.643794688146556 0.0 37 0.0 0.0 0.0 39.233691273532784 0.0 38 0.0 0.0 0.0 39.83054829060498 0.0 39 0.0 0.0 0.0 40.47160404888311 0.0 40 0.0 0.0 0.0 41.09108246893472 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACGG 45 3.092282E-10 46.0 1 CGTTGGA 20 6.308808E-4 46.0 27 TAACGTT 20 6.308808E-4 46.0 46 CACGACG 20 6.308808E-4 46.0 25 ATATCGG 40 5.6024874E-9 46.0 1 CTACGAA 40 5.6024874E-9 46.0 11 CTTGCAC 20 6.308808E-4 46.0 23 ACGGATC 20 6.308808E-4 46.0 4 GCGATGC 65 0.0 46.0 8 GGGTTCG 45 3.092282E-10 46.0 6 ACGTAGG 105 0.0 46.0 1 CCAACGG 25 3.415008E-5 46.0 1 ACGAGTC 40 5.6024874E-9 46.0 39 CGATCTA 25 3.415008E-5 46.0 9 TCTGGTA 20 6.308808E-4 46.0 21 CGATACG 20 6.308808E-4 46.0 9 TCAACGG 40 5.6024874E-9 46.0 1 CTAGCGG 185 0.0 46.0 1 ACCGGGT 35 1.0183794E-7 45.999996 3 CTTGCGG 115 0.0 44.000004 1 >>END_MODULE