##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544910_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 444824 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92643832167329 34.0 33.0 34.0 31.0 34.0 2 33.219689135478305 34.0 33.0 34.0 31.0 34.0 3 33.24955712821251 34.0 34.0 34.0 31.0 34.0 4 36.54069474668633 37.0 37.0 37.0 35.0 37.0 5 36.5296971386436 37.0 37.0 37.0 35.0 37.0 6 36.6573566174487 37.0 37.0 37.0 35.0 37.0 7 36.496023146233114 37.0 37.0 37.0 35.0 37.0 8 36.53030861644156 37.0 37.0 37.0 35.0 37.0 9 38.29445128859954 39.0 39.0 39.0 37.0 39.0 10 38.02324065248278 39.0 39.0 39.0 35.0 39.0 11 36.87807087747064 39.0 35.0 39.0 35.0 39.0 12 36.692024261280864 39.0 35.0 39.0 35.0 39.0 13 36.661524558027445 39.0 35.0 39.0 35.0 39.0 14 37.798039224502276 40.0 35.0 41.0 35.0 41.0 15 37.90934616837221 40.0 35.0 41.0 35.0 41.0 16 37.9372470909843 40.0 35.0 41.0 35.0 41.0 17 38.0431024405158 40.0 35.0 41.0 35.0 41.0 18 38.02669145549701 39.0 35.0 41.0 35.0 41.0 19 37.89011384277827 39.0 35.0 41.0 35.0 41.0 20 37.75627214358938 39.0 35.0 41.0 35.0 41.0 21 37.70706841357481 39.0 35.0 41.0 35.0 41.0 22 37.70288923259536 39.0 35.0 41.0 35.0 41.0 23 37.678216553063685 39.0 35.0 41.0 35.0 41.0 24 37.64175494128015 39.0 35.0 41.0 35.0 41.0 25 37.6040141718972 38.0 35.0 41.0 35.0 41.0 26 37.56026653238135 38.0 35.0 41.0 35.0 41.0 27 37.586135190547274 38.0 35.0 41.0 35.0 41.0 28 37.600974767548514 38.0 35.0 41.0 35.0 41.0 29 37.619550653741705 38.0 35.0 41.0 35.0 41.0 30 37.487475945542506 38.0 35.0 41.0 35.0 41.0 31 37.327864503713826 38.0 35.0 41.0 35.0 41.0 32 37.26501267917199 38.0 35.0 41.0 35.0 41.0 33 37.15216130424617 38.0 35.0 41.0 35.0 41.0 34 37.000499073790984 38.0 35.0 41.0 34.0 41.0 35 36.92362372533856 37.0 35.0 41.0 35.0 41.0 36 36.93065572001511 37.0 35.0 41.0 34.0 41.0 37 36.881024854774026 37.0 35.0 41.0 34.0 41.0 38 36.87523829649479 37.0 35.0 41.0 34.0 41.0 39 36.76989326115498 37.0 35.0 41.0 34.0 41.0 40 36.778802402748056 37.0 35.0 41.0 34.0 41.0 41 36.71653957520277 36.0 35.0 41.0 34.0 41.0 42 36.56811233206842 36.0 35.0 41.0 34.0 41.0 43 36.45436172508678 36.0 35.0 40.0 34.0 41.0 44 36.38140927647789 36.0 35.0 40.0 34.0 41.0 45 36.37167733755373 36.0 35.0 40.0 34.0 41.0 46 36.409822761361795 36.0 35.0 41.0 34.0 41.0 47 36.36209377191878 36.0 35.0 40.0 34.0 41.0 48 36.41358604751542 36.0 35.0 40.0 34.0 41.0 49 36.30375834037732 35.0 35.0 40.0 34.0 41.0 50 36.20792718018812 35.0 35.0 40.0 34.0 41.0 51 36.1113046957898 36.0 35.0 40.0 33.0 41.0 52 35.89708738737119 35.0 35.0 40.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 3.0 14 7.0 15 9.0 16 9.0 17 28.0 18 54.0 19 88.0 20 136.0 21 247.0 22 425.0 23 711.0 24 1225.0 25 1957.0 26 2552.0 27 3067.0 28 2838.0 29 3042.0 30 3446.0 31 4301.0 32 5749.0 33 8261.0 34 25796.0 35 141535.0 36 14231.0 37 19737.0 38 37418.0 39 166913.0 40 1035.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.837526752153664 22.506879125227055 25.89338704746147 23.762207075157814 2 25.266622304551912 25.247963239393556 26.839603978202614 22.645810477851914 3 24.582756326097513 26.144947215078325 27.123986115857058 22.148310342967108 4 25.669703073575167 27.050249087279465 24.61108213585598 22.66896570328939 5 23.14510907684837 34.66539575202777 21.514126935596998 20.67536823552686 6 87.3188047407514 2.92879880581983 7.2581515385860484 2.4942449148427244 7 87.29497509127205 1.8850151970217432 5.549610632519828 5.270399079186375 8 78.63064942539071 3.3129957016707734 11.778366275200979 6.277988597737533 9 58.039809003111344 13.544233224826 14.738638202974661 13.677319569087999 10 53.290739708289124 14.546202543028253 22.333552146466918 9.829505602215708 11 48.60236857723504 14.72649857022103 21.226597485747174 15.444535366796755 12 19.087998848982966 42.07461827599231 25.32080103591533 13.516581839109401 13 10.963886840638096 45.761694512885995 27.015179037102317 16.259239609373594 14 9.802753448554933 19.44319551103358 55.909977878891425 14.844073161520061 15 9.454301026923009 14.108276531841806 57.01963023577864 19.417792205456543 16 11.314587342409583 17.435659946405767 28.43191914105354 42.81783357013111 17 18.288806359369097 20.628608168623998 38.272665143967046 22.809920328039855 18 25.228854558207292 26.145621639120193 27.36363145873424 21.26189234393828 19 28.914581947017247 20.861734079096454 24.985162671078896 25.238521302807403 20 16.318364117044045 32.872776648741976 28.16934338075284 22.639515853461145 21 19.477591137168858 23.45039835980073 24.672229915652032 32.39978058737838 22 14.695924680323005 32.81185367695988 21.536607736992607 30.955613905724512 23 16.26238692156898 21.249752711184648 41.99188892685646 20.49597144038991 24 15.071129255615704 20.608375447367948 39.01677967016168 25.303715626854668 25 12.291827779076668 33.48695214286999 30.193514738413395 24.027705339639947 26 16.152230994730502 32.09966188874701 27.14893980540618 24.599167311116307 27 16.10569573584159 27.29821232667302 40.537605884574575 16.058486052910816 28 13.923484344369907 22.719772314443464 36.30177328561409 27.054970055572543 29 17.193766523389026 28.090210959840295 29.237181447044225 25.478841069726453 30 32.00928906713666 23.288311781738397 20.620739888135535 24.081659262989408 31 30.14248331924537 22.217326403251622 24.369413520853193 23.270776756649823 32 27.170746182759924 25.767269751632107 21.048099922666044 26.01388414294193 33 20.591290038307285 23.35395572181357 27.73793680197112 28.316817437908025 34 18.38345053324461 20.97144038990702 30.29602719277737 30.349081884071005 35 32.16755390896175 18.826097512724132 26.95470568134813 22.05164289696599 36 21.341699188892687 24.741021167922593 29.03732712263727 24.87995252054745 37 20.799687067244573 30.09077747603547 23.427692750391166 25.681842706328794 38 17.668785856878223 28.716526086721938 28.33255399888495 25.28213405751488 39 23.974650648346312 23.656772116612412 26.40977105551859 25.958806179522686 40 15.053819038541086 18.33444238620218 32.4948743772818 34.11686419797493 41 22.815315720374798 22.025565167347086 24.23880006474471 30.920319047533408 42 23.257737891840367 20.886687768645576 27.996016401992698 27.859557937521355 43 22.472708307105734 26.859162275416793 28.134722946603603 22.533406470873874 44 14.897577468841607 34.16677157707318 24.63805909753071 26.297591856554504 45 24.498453320863984 28.19339783824614 24.94222434041329 22.36592450047659 46 23.018317356977143 22.28701688757801 26.834658201895582 27.86000755354927 47 23.519639228099205 18.662886894592017 31.101289498768054 26.716184378540724 48 21.388234447781596 15.398449723935759 30.952241785515174 32.261074042767476 49 19.92023811664838 25.015736560976926 30.13866158300811 24.92536373936658 50 19.177022822509578 27.770309155980794 25.680943474272972 27.37172454723666 51 19.522552739960076 20.173147132348973 32.930552308328686 27.373747819362265 52 22.84004460190997 17.957664154811788 34.22477204467385 24.97751919860439 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 117.0 1 154.5 2 192.0 3 874.0 4 1556.0 5 1121.5 6 687.0 7 814.0 8 941.0 9 998.0 10 1055.0 11 1012.5 12 970.0 13 982.0 14 933.5 15 873.0 16 761.0 17 649.0 18 609.0 19 569.0 20 573.5 21 578.0 22 552.0 23 526.0 24 663.5 25 801.0 26 826.0 27 851.0 28 1280.0 29 1709.0 30 1768.0 31 1827.0 32 2035.0 33 2243.0 34 3036.0 35 3829.0 36 4644.5 37 5460.0 38 5708.0 39 7699.0 40 9442.0 41 16499.5 42 23557.0 43 34921.0 44 46285.0 45 49193.0 46 52101.0 47 50012.0 48 47923.0 49 50266.5 50 52610.0 51 53404.0 52 54198.0 53 47453.5 54 40709.0 55 33070.0 56 25431.0 57 21398.0 58 17365.0 59 14942.5 60 12520.0 61 11214.0 62 9908.0 63 9015.0 64 6240.5 65 4359.0 66 3679.5 67 3000.0 68 2326.5 69 1653.0 70 1384.5 71 1116.0 72 946.5 73 777.0 74 707.5 75 638.0 76 515.5 77 393.0 78 263.5 79 134.0 80 134.5 81 135.0 82 95.5 83 56.0 84 29.5 85 3.0 86 2.0 87 1.0 88 2.0 89 2.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 444824.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.958521714548425 #Duplication Level Percentage of deduplicated Percentage of total 1 67.52337230449655 15.502368092923216 2 13.089963132456148 6.010524056382656 3 5.19933792358364 3.581073378596103 4 2.5131188414871555 2.3078997397409458 5 1.4136243216317712 1.6227362342198404 6 0.9044662918859742 1.245912540140474 7 0.5690341274328997 0.9144927659691141 8 0.4542289115195732 0.8342739462798253 9 0.35040515302848785 0.7240305883224784 >10 6.641725005888335 42.52115431737163 >50 1.1440578470823064 16.85462528190348 >100 0.18967800257036493 6.248344997623714 >500 0.003993221106744525 0.5922428095466098 >1k 0.002994915830058394 1.0403212509799 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 2232 0.5017714871499739 No Hit CTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCTT 1275 0.28663021779400394 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 1032 0.2320018704026761 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 882 0.1982806683092639 No Hit ACCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 615 0.13825692858299013 No Hit CGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC 559 0.12566767980144955 No Hit TCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT 528 0.11869863136881104 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29359926622664245 0.0 2 0.0 0.0 0.0 1.2400410049817456 0.0 3 0.0 0.0 0.0 2.033388486232757 0.0 4 0.0 0.0 0.0 2.5187489883639373 0.0 5 0.0 0.0 0.0 5.2829883279679155 0.0 6 0.0 0.0 0.0 5.870411668435156 0.0 7 0.0 0.0 0.0 9.138445767314714 0.0 8 0.0 0.0 0.0 12.28823085085337 0.0 9 0.0 0.0 0.0 15.665521644515584 0.0 10 0.0 0.0 0.0 16.763483984677087 0.0 11 2.248080139560815E-4 0.0 0.0 17.8859503983598 0.0 12 2.248080139560815E-4 0.0 0.0 18.97716849810262 0.0 13 2.248080139560815E-4 0.0 0.0 19.285155477222453 0.0 14 2.248080139560815E-4 0.0 0.0 19.534017948671835 0.0 15 2.248080139560815E-4 0.0 0.0 20.471017750840783 0.0 16 2.248080139560815E-4 0.0 0.0 21.433420858586768 0.0 17 2.248080139560815E-4 0.0 0.0 23.25638904375663 0.0 18 2.248080139560815E-4 0.0 0.0 23.811440030214197 0.0 19 2.248080139560815E-4 0.0 0.0 24.601415391255866 0.0 20 2.248080139560815E-4 0.0 0.0 25.499523407010415 0.0 21 2.248080139560815E-4 0.0 0.0 26.124939301836232 0.0 22 2.248080139560815E-4 0.0 0.0 26.960101073683074 0.0 23 2.248080139560815E-4 0.0 0.0 27.47828354585184 0.0 24 2.248080139560815E-4 0.0 0.0 27.857984281423665 0.0 25 2.248080139560815E-4 0.0 0.0 28.316367821880114 0.0 26 2.248080139560815E-4 0.0 0.0 28.693370861284464 0.0 27 2.248080139560815E-4 0.0 0.0 29.09330431811233 0.0 28 2.248080139560815E-4 0.0 0.0 29.456369260651403 0.0 29 2.248080139560815E-4 0.0 0.0 30.082909195547003 0.0 30 2.248080139560815E-4 0.0 0.0 30.69056525727029 0.0 31 2.248080139560815E-4 0.0 0.0 31.09162275416794 0.0 32 2.248080139560815E-4 0.0 0.0 31.495827563260974 0.0 33 2.248080139560815E-4 0.0 0.0 31.88924158768412 0.0 34 2.248080139560815E-4 0.0 0.0 32.556022157077855 0.0 35 2.248080139560815E-4 0.0 0.0 32.9678704386454 0.0 36 2.248080139560815E-4 0.0 0.0 33.37949391219898 0.0 37 2.248080139560815E-4 0.0 0.0 33.76796216031509 0.0 38 2.248080139560815E-4 0.0 0.0 34.11866266208658 0.0 39 2.248080139560815E-4 0.0 0.0 34.570976386166215 0.0 40 4.49616027912163E-4 0.0 0.0 34.99968526878046 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 35 1.01767E-7 46.000004 5 AATCAGG 35 1.01767E-7 46.000004 1 ACATTGG 35 1.01767E-7 46.000004 1 GTAATGG 70 0.0 46.000004 1 TACGCGG 35 1.01767E-7 46.000004 1 CTCGCGG 35 1.01767E-7 46.000004 1 CTCGAGG 35 1.01767E-7 46.000004 1 TACACAA 35 1.01767E-7 46.000004 29 GCATCGG 35 1.01767E-7 46.000004 1 CGGGTCA 20 6.3072616E-4 46.0 5 AAGTAGG 80 0.0 46.0 1 AGGTAGT 20 6.3072616E-4 46.0 20 CAGCGAT 130 0.0 46.0 20 CGGAAAT 20 6.3072616E-4 46.0 30 CGGCGAT 20 6.3072616E-4 46.0 5 CTCACGG 20 6.3072616E-4 46.0 1 AGTCCGG 25 3.4137556E-5 46.0 1 TCTTGCG 20 6.3072616E-4 46.0 20 CGTATTA 20 6.3072616E-4 46.0 17 CACGGGT 45 3.092282E-10 46.0 3 >>END_MODULE