SRR1544906_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544906_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1055738
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	2606	0.2468415459138536	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCTT	2055	0.19465056671257452	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1919	0.1817685827354893	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1648	0.1560993352517386	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	1567	0.1484269771477393	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1358	0.12863039883001273	No Hit
GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA	1211	0.11470648967831035	No Hit
GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT	1176	0.11139127321361929	No Hit
GGACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTG	1057	0.10011953723366972	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTCA	20	6.311218E-4	46.000004	14
TAACGAT	20	6.311218E-4	46.000004	30
ACGGGTC	40	5.6097633E-9	46.000004	4
ACGATAG	20	6.311218E-4	46.000004	32
CGGTATT	20	6.311218E-4	46.000004	43
CGCAAAC	20	6.311218E-4	46.000004	23
CCTAACG	25	3.4169654E-5	46.0	36
AATACGG	30	1.8612591E-6	46.0	1
ATCGATT	25	3.4169654E-5	46.0	12
CTAACGG	90	0.0	45.999996	1
CACGACC	210	0.0	44.904762	26
ACGTAGG	160	0.0	44.562504	1
TAACGGG	315	0.0	42.34921	2
ACACGAC	225	0.0	41.91111	25
CGTAGGG	445	0.0	41.86517	2
GCGGGAT	315	0.0	41.61905	4
GCGATGA	105	0.0	41.619045	8
CGAATAT	150	0.0	41.399998	14
TACGTGA	50	8.712959E-10	41.399998	24
GCGAGAC	245	0.0	41.30612	20