##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544900_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 732607 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.906413670631046 34.0 33.0 34.0 31.0 34.0 2 33.18872738043726 34.0 33.0 34.0 31.0 34.0 3 33.23091234454489 34.0 33.0 34.0 31.0 34.0 4 36.52437527896949 37.0 37.0 37.0 35.0 37.0 5 36.52140369939135 37.0 37.0 37.0 35.0 37.0 6 36.6507977674251 37.0 37.0 37.0 35.0 37.0 7 36.48672344108096 37.0 37.0 37.0 35.0 37.0 8 36.524453083303875 37.0 37.0 37.0 35.0 37.0 9 38.29417955329392 39.0 39.0 39.0 37.0 39.0 10 38.048777857705424 39.0 39.0 39.0 35.0 39.0 11 37.12259506119925 39.0 35.0 39.0 35.0 39.0 12 36.97444332363737 39.0 35.0 39.0 35.0 39.0 13 36.95794880474798 39.0 35.0 39.0 35.0 39.0 14 38.167615106052764 40.0 35.0 41.0 35.0 41.0 15 38.26944596488977 40.0 35.0 41.0 35.0 41.0 16 38.2888274340813 40.0 35.0 41.0 35.0 41.0 17 38.39267711064732 40.0 36.0 41.0 35.0 41.0 18 38.370711718561246 40.0 36.0 41.0 35.0 41.0 19 38.24914995352215 40.0 35.0 41.0 35.0 41.0 20 38.13719088133201 40.0 35.0 41.0 35.0 41.0 21 38.08798168731666 40.0 35.0 41.0 35.0 41.0 22 38.07412023090142 40.0 35.0 41.0 35.0 41.0 23 38.072014053919766 40.0 35.0 41.0 35.0 41.0 24 38.02091708105437 40.0 35.0 41.0 35.0 41.0 25 37.98985404179867 40.0 35.0 41.0 35.0 41.0 26 37.95238920731033 40.0 35.0 41.0 35.0 41.0 27 37.94516159414256 40.0 35.0 41.0 35.0 41.0 28 37.97684024313172 40.0 35.0 41.0 35.0 41.0 29 37.993812507933995 40.0 35.0 41.0 35.0 41.0 30 37.889977846239525 40.0 35.0 41.0 35.0 41.0 31 37.80057520607911 40.0 35.0 41.0 35.0 41.0 32 37.70298809593684 40.0 35.0 41.0 35.0 41.0 33 37.64897687300285 40.0 35.0 41.0 35.0 41.0 34 37.47667985700382 39.0 35.0 41.0 35.0 41.0 35 37.45798907190349 39.0 35.0 41.0 35.0 41.0 36 37.35720652409819 39.0 35.0 41.0 34.0 41.0 37 37.30982231947006 39.0 35.0 41.0 34.0 41.0 38 37.259021549070646 39.0 35.0 41.0 35.0 41.0 39 37.20543210752832 39.0 35.0 41.0 34.0 41.0 40 37.18456007108859 39.0 35.0 41.0 34.0 41.0 41 37.17930213607023 39.0 35.0 41.0 34.0 41.0 42 37.07654172018558 38.0 35.0 41.0 34.0 41.0 43 36.9915889419566 38.0 35.0 41.0 34.0 41.0 44 36.900732589232696 38.0 35.0 41.0 34.0 41.0 45 36.8722084282569 38.0 35.0 41.0 34.0 41.0 46 36.88824704104656 38.0 35.0 41.0 34.0 41.0 47 36.87531377669064 38.0 35.0 41.0 34.0 41.0 48 36.91352798976805 38.0 35.0 41.0 34.0 41.0 49 36.81720212883579 37.0 35.0 41.0 34.0 41.0 50 36.74543104283743 37.0 35.0 41.0 34.0 41.0 51 36.67151965514935 37.0 35.0 41.0 34.0 41.0 52 36.4974399644011 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 9.0 14 12.0 15 11.0 16 6.0 17 31.0 18 65.0 19 119.0 20 206.0 21 339.0 22 533.0 23 1010.0 24 1580.0 25 2719.0 26 3664.0 27 4201.0 28 4142.0 29 4509.0 30 5333.0 31 6727.0 32 8838.0 33 13217.0 34 39843.0 35 192452.0 36 24216.0 37 34200.0 38 64019.0 39 318467.0 40 2135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.116000802613136 22.21627693975078 25.439969861057836 21.227752396578246 2 25.302242539315078 24.04222181879234 27.957144826626006 22.698390815266574 3 25.329542305765575 25.439287366896572 26.780388393777294 22.45078193356056 4 25.503714815719754 28.485804803939903 23.72731901278585 22.2831613675545 5 23.301442656158077 35.12538100236552 21.164143940748588 20.40903240072781 6 86.96886598135153 2.697216925309204 7.419394027084099 2.914523066255168 7 86.5477670838526 2.191215754149223 5.638630261518113 5.622386900480066 8 76.22545239125479 3.996549309520657 12.5475186559779 7.230479643246652 9 53.56746523033495 15.37836793806229 15.051999230146587 16.00216760145617 10 47.253575245663775 17.41697799775323 23.918007881442573 11.411438875140423 11 43.55623137644057 15.92272528108522 23.606244548577887 16.914798793896317 12 18.97975312821199 38.25584522124414 27.07085790881059 15.69354374173329 13 12.268651541686062 41.355460704033675 28.552825730575876 17.823062023704388 14 10.632167041810957 21.235805827681144 51.92920624564057 16.20282088486733 15 12.253909667802793 15.55103896086169 52.015064011127386 20.179987360208134 16 11.755825428913456 19.946574357056377 28.56456463014959 39.733035583880586 17 17.815691086762754 22.334894424978195 36.829705421870116 23.019709066388938 18 24.970413878109273 26.958109873370034 27.592556445679605 20.478919802841087 19 26.66463738402718 22.040602942641826 25.79036236344998 25.504397309881018 20 16.797136800494673 32.9560050613767 27.839346334392108 22.40751180373652 21 18.654476410954306 24.96099545868385 24.876912178016315 31.50761595234553 22 15.358985103882436 32.4848110924411 22.261594552058607 29.894609251617855 23 15.734356892576784 23.200297021458983 39.89915466273186 21.166191423232377 24 15.910986381511504 21.982590938934518 37.398905552363 24.70751712719098 25 13.02512807002936 32.19625256105934 30.775845712639928 24.00277365627137 26 16.896917446871242 30.913300036718184 27.126549432369607 25.063233084040963 27 16.936502108224463 27.745025641305638 37.482579336533774 17.83589291393612 28 15.354890138914861 24.416911113325426 32.42789107939182 27.800307668367896 29 17.22956510107056 32.35308971931745 27.3621464168374 23.055198762774584 30 27.559660227106757 24.865855772603865 21.321527094335707 26.252956905953667 31 30.957389159535744 26.284078639707236 22.123184736154585 20.63534746460244 32 23.168083297047392 29.744733533804617 22.145161048147234 24.942022121000754 33 20.899745702675514 25.993745623506193 25.16246773508853 27.94404093872977 34 18.261632771731637 25.010271537127 30.70254583972034 26.02554985142102 35 33.187643579709174 22.085920554949652 23.080587545573547 21.645848319767623 36 22.058757287331407 28.237786425737127 30.043392978773063 19.6600633081584 37 21.590566292705365 27.72536980946128 26.514625167381695 24.169438730451663 38 18.429799333066704 26.474221513034955 29.821991872859527 25.273987281038814 39 24.164934268987327 22.107896866942305 27.77423639140767 25.9529324726627 40 14.678811422768279 19.556187696814252 32.87615324450899 32.888847635908476 41 22.098614946349134 24.391522330526463 24.226631741165455 29.28323098195895 42 21.990917367701922 21.37216816110138 27.90131680423474 28.735597666961958 43 24.44735035291773 26.936952554370897 27.59555941998916 21.02013767272221 44 15.80424429469006 33.76312265648567 25.991288644525646 24.441344404298622 45 23.190196107872296 28.107566539768253 26.238624528567158 22.463612823792293 46 23.319460502015403 21.352239331592518 28.914138139548218 26.41416202684386 47 22.268009997174474 18.627449642168312 32.08759949058636 27.016940870070854 48 21.610358623381977 16.907427856954683 30.656136236754495 30.82607728290884 49 20.814843429014466 24.283005758885736 30.366758712379216 24.53539209972059 50 19.61515519234733 25.96030340960433 27.304543909626855 27.11999748842149 51 19.190643824042088 20.223939984193436 32.83888906330406 27.746527128460418 52 22.023131092113506 18.352950490508555 34.97700677170707 24.646911645670873 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 204.0 1 211.5 2 219.0 3 1225.5 4 2232.0 5 1583.5 6 935.0 7 1087.0 8 1239.0 9 1326.5 10 1414.0 11 1400.5 12 1387.0 13 1323.5 14 1190.5 15 1121.0 16 1126.0 17 1131.0 18 1004.5 19 878.0 20 964.0 21 1050.0 22 1104.0 23 1158.0 24 1211.0 25 1264.0 26 1528.5 27 1793.0 28 2499.0 29 3205.0 30 3513.0 31 3821.0 32 4768.0 33 5715.0 34 6702.0 35 7689.0 36 8800.0 37 9911.0 38 11115.5 39 15079.0 40 17838.0 41 28197.5 42 38557.0 43 55171.5 44 71786.0 45 83363.5 46 94941.0 47 100720.0 48 106499.0 49 102889.0 50 99279.0 51 87164.5 52 75050.0 53 61845.0 54 48640.0 55 40079.5 56 31519.0 57 27339.0 58 23159.0 59 21952.5 60 20746.0 61 18165.0 62 15584.0 63 13461.0 64 9417.5 65 7497.0 66 5885.0 67 4273.0 68 3278.0 69 2283.0 70 1766.0 71 1249.0 72 1145.0 73 1041.0 74 790.5 75 540.0 76 529.0 77 518.0 78 359.5 79 201.0 80 157.5 81 114.0 82 60.0 83 6.0 84 4.0 85 2.0 86 1.0 87 0.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 732607.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.063808611934462 #Duplication Level Percentage of deduplicated Percentage of total 1 67.89845817315344 15.659970443510481 2 12.98204975867859 5.98831022049546 3 5.406534513305185 3.7408583180606705 4 2.7355717929605046 2.5237081710818994 5 1.6505687785880356 1.9034201205094439 6 1.045662531909328 1.4470176305176532 7 0.6518111999393141 1.0523274136560983 8 0.5497396874016534 1.0143272749293128 9 0.42316087247652967 0.8783731237372097 >10 4.693445302269054 28.249678086281214 >50 1.6687554113485719 24.961830188566214 >100 0.28652999064392437 10.204822954348035 >500 0.004152608560056875 0.7214591598615967 >1k 0.0035593787657630356 1.6538968944447148 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 3337 0.4554966032265594 No Hit CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT 2733 0.3730513085460554 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 2374 0.32404822776741143 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1301 0.1775849807604896 No Hit TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 1202 0.16407159636749308 No Hit ACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 1141 0.1557451676000912 No Hit GCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 952 0.12994688830437057 No Hit CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 893 0.12189345720147364 No Hit AGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 794 0.10838007280847713 No Hit ACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 782 0.10674208682144724 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.37919375599741745 0.0 2 0.0 0.0 0.0 1.4483891090311722 0.0 3 0.0 0.0 0.0 2.3920055363926362 0.0 4 0.0 0.0 0.0 2.9865944496844827 0.0 5 0.0 0.0 0.0 6.051948725578653 0.0 6 0.0 0.0 0.0 6.686941293217236 0.0 7 0.0 0.0 0.0 10.055459475544186 0.0 8 0.0 0.0 0.0 13.426161639187177 0.0 9 0.0 0.0 0.0 16.7987747864817 0.0 10 0.0 0.0 0.0 18.05074207590154 0.0 11 0.0 0.0 0.0 19.311718288250045 0.0 12 0.0 0.0 0.0 20.42090779913378 0.0 13 0.0 0.0 0.0 20.77894423613206 0.0 14 0.0 0.0 0.0 21.066820273352562 0.0 15 0.0 0.0 0.0 22.087558540936683 0.0 16 0.0 0.0 0.0 23.203436494600787 0.0 17 0.0 0.0 0.0 24.998396138721034 0.0 18 0.0 0.0 0.0 25.606088939909117 0.0 19 0.0 0.0 0.0 26.505479745620775 0.0 20 0.0 0.0 0.0 27.486087356522663 0.0 21 0.0 0.0 0.0 28.27518710577431 0.0 22 1.3649883225249008E-4 0.0 0.0 29.246239798418525 0.0 23 1.3649883225249008E-4 0.0 0.0 29.853932599606612 0.0 24 1.3649883225249008E-4 0.0 0.0 30.35010585484441 0.0 25 1.3649883225249008E-4 0.0 0.0 30.87412487186172 0.0 26 1.3649883225249008E-4 0.0 0.0 31.327164496107734 0.0 27 1.3649883225249008E-4 0.0 0.0 31.849136030641258 0.0 28 1.3649883225249008E-4 0.0 0.0 32.28688778567499 0.0 29 1.3649883225249008E-4 0.0 0.0 32.971156431756725 0.0 30 1.3649883225249008E-4 0.0 0.0 33.60382851924702 0.0 31 1.3649883225249008E-4 0.0 0.0 34.07884445548569 0.0 32 2.7299766450498015E-4 0.0 0.0 34.57556370605249 0.0 33 4.0949649675747025E-4 0.0 0.0 35.05917906872307 0.0 34 4.0949649675747025E-4 0.0 0.0 35.76283054898465 0.0 35 4.0949649675747025E-4 0.0 0.0 36.24207794902315 0.0 36 4.0949649675747025E-4 0.0 0.0 36.69893954057223 0.0 37 4.0949649675747025E-4 0.0 0.0 37.14774770101842 0.0 38 4.0949649675747025E-4 0.0 0.0 37.56393264055626 0.0 39 4.0949649675747025E-4 0.0 0.0 38.0651563525874 0.0 40 4.0949649675747025E-4 0.0 0.0 38.55150169190303 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 50 1.6370905E-11 46.0 5 AGTCCGG 20 6.3099485E-4 46.0 10 TCTTGCG 20 6.3099485E-4 46.0 21 TCGCAGG 50 1.6370905E-11 46.0 1 CGTATGA 20 6.3099485E-4 46.0 20 GTCGAGT 20 6.3099485E-4 46.0 13 CGAAACA 20 6.3099485E-4 46.0 34 CGTGCGG 20 6.3099485E-4 46.0 1 GCGCGAC 20 6.3099485E-4 46.0 8 TAGAAGT 25 3.4159348E-5 46.0 8 ACTCTGC 20 6.3099485E-4 46.0 38 ACTTCGA 20 6.3099485E-4 46.0 15 CGATTGA 20 6.3099485E-4 46.0 9 TGAGTCA 20 6.3099485E-4 46.0 12 CGCGAAG 20 6.3099485E-4 46.0 13 CGCGAAA 20 6.3099485E-4 46.0 17 ATCGTCT 25 3.4159348E-5 46.0 39 ATCCGAC 20 6.3099485E-4 46.0 19 ATCCGAA 20 6.3099485E-4 46.0 27 ATTCCGG 40 5.6061253E-9 46.0 1 >>END_MODULE