##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544899_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 428772 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91815930144692 34.0 33.0 34.0 31.0 34.0 2 33.249165057419795 34.0 33.0 34.0 31.0 34.0 3 33.3627498997136 34.0 34.0 34.0 31.0 34.0 4 36.59822236526639 37.0 37.0 37.0 35.0 37.0 5 36.594803298722866 37.0 37.0 37.0 35.0 37.0 6 36.41110426986837 37.0 37.0 37.0 35.0 37.0 7 36.238576679447355 37.0 37.0 37.0 35.0 37.0 8 36.38774220331552 37.0 37.0 37.0 35.0 37.0 9 38.2526307688002 39.0 39.0 39.0 37.0 39.0 10 38.075116845316394 39.0 39.0 39.0 35.0 39.0 11 37.25036149748584 39.0 35.0 39.0 35.0 39.0 12 37.17329956247143 39.0 35.0 39.0 35.0 39.0 13 37.16507374548711 39.0 35.0 39.0 35.0 39.0 14 38.33407965072346 40.0 35.0 41.0 35.0 41.0 15 38.40166801936694 40.0 35.0 41.0 35.0 41.0 16 38.445437202056105 40.0 35.0 41.0 35.0 41.0 17 38.57295252488502 40.0 36.0 41.0 35.0 41.0 18 38.55879581689103 40.0 36.0 41.0 35.0 41.0 19 38.465697386956236 40.0 35.0 41.0 35.0 41.0 20 38.36216917149441 40.0 35.0 41.0 35.0 41.0 21 38.31613304973273 40.0 35.0 41.0 35.0 41.0 22 38.305955146324855 40.0 35.0 41.0 35.0 41.0 23 38.27939790844552 40.0 35.0 41.0 35.0 41.0 24 38.24613780750609 40.0 35.0 41.0 35.0 41.0 25 38.219690184993425 40.0 35.0 41.0 35.0 41.0 26 38.1651367160169 40.0 35.0 41.0 35.0 41.0 27 38.246699877790526 40.0 35.0 41.0 35.0 41.0 28 38.2849439795509 40.0 35.0 41.0 35.0 41.0 29 38.27904107544336 40.0 35.0 41.0 35.0 41.0 30 38.20555913165972 40.0 35.0 41.0 35.0 41.0 31 38.10580448350172 40.0 35.0 41.0 35.0 41.0 32 38.02868657468305 40.0 35.0 41.0 35.0 41.0 33 37.986155812413124 40.0 35.0 41.0 35.0 41.0 34 37.82826770404784 40.0 35.0 41.0 35.0 41.0 35 37.81133562825931 40.0 35.0 41.0 35.0 41.0 36 37.72381358857388 40.0 35.0 41.0 35.0 41.0 37 37.67069444833152 40.0 35.0 41.0 35.0 41.0 38 37.64401593387628 40.0 35.0 41.0 35.0 41.0 39 37.62830595281408 40.0 35.0 41.0 35.0 41.0 40 37.63787280885879 40.0 35.0 41.0 35.0 41.0 41 37.62243336785051 40.0 35.0 41.0 35.0 41.0 42 37.54449917438639 40.0 35.0 41.0 35.0 41.0 43 37.47456690268954 39.0 35.0 41.0 35.0 41.0 44 37.2592706613305 39.0 35.0 41.0 35.0 41.0 45 37.29899806890376 39.0 35.0 41.0 35.0 41.0 46 37.264135717817396 39.0 35.0 41.0 35.0 41.0 47 37.2328743481384 39.0 35.0 41.0 35.0 41.0 48 37.22573768809531 39.0 35.0 41.0 35.0 41.0 49 37.13257628763072 38.0 35.0 41.0 35.0 41.0 50 37.06692134747605 38.0 35.0 41.0 35.0 41.0 51 36.99710102338772 38.0 35.0 41.0 34.0 41.0 52 36.584205591783046 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 1.0 15 1.0 16 9.0 17 16.0 18 26.0 19 51.0 20 91.0 21 174.0 22 274.0 23 463.0 24 817.0 25 1396.0 26 1909.0 27 2075.0 28 2004.0 29 1982.0 30 2178.0 31 2842.0 32 4026.0 33 6227.0 34 20483.0 35 108684.0 36 12893.0 37 19287.0 38 37484.0 39 202380.0 40 996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.33710223615348 21.851473510397135 24.505098280671312 23.306325972778072 2 25.019824055675276 24.535650648829684 27.757176308154452 22.68734898734059 3 25.260044965622757 25.295961490022666 27.108813075480676 22.3351804688739 4 25.518923810323436 28.205199966415716 23.961919155168715 22.313957068092133 5 23.560307109606036 34.52510891569412 21.386191262489156 20.528392712210685 6 85.62755963542395 2.666452100417005 8.124597688281884 3.581390575877156 7 84.91552620040488 2.113710783353391 6.475469480283228 6.4952935359585044 8 74.06500424468015 4.060433050665622 13.830427359995523 8.0441353446587 9 52.337839224576236 15.052988534699093 15.850615245398487 16.758556995326188 10 45.653167650872724 17.02816415250996 25.648363232673777 11.670304963943542 11 42.038659240808634 15.813532600076496 24.236190796040784 17.911617363074082 12 18.34634724282369 36.582612670603496 28.55760170906682 16.51343837750599 13 12.116462828729487 39.64881102310785 29.285727612810536 18.94899853535212 14 10.40226507327904 20.8297183584749 51.34477064733704 17.423245920909014 15 11.94760851921301 15.622755217225007 51.5318164432379 20.897819820324088 16 11.53806685138022 20.385892735533105 29.323743154870186 38.75229725821649 17 17.365173098989672 22.438732006754172 37.2934799847005 22.90261490955566 18 24.100221096526823 27.652225425167686 27.95051915703451 20.297034321270978 19 25.919369734964036 22.241191122554643 25.8039237636786 26.03551537880272 20 16.290242833020812 33.78485535436083 27.376087990820295 22.548813821798063 21 18.2052466112526 25.263776552573397 24.720364202886383 31.810612633287622 22 15.145811760096276 33.1961975128973 22.07676807254205 29.58122265446438 23 15.483053930760404 23.460487158676408 39.27518587967498 21.781273030888208 24 16.097366432509585 22.652831808047168 36.383205992928644 24.866595766514603 25 13.068950397880458 31.676275503064566 30.981034209323372 24.273739889731605 26 17.354211562322167 29.566762755030645 26.980772998236823 26.09825268441036 27 17.659268795537024 27.177147761514277 36.98142602595318 18.182157416995512 28 16.119755954213428 24.40527832974168 31.866586437547227 27.608379278497665 29 17.84794716072878 31.994859738975496 26.804455514819065 23.352737585476664 30 27.430196001604585 24.231059863983656 20.66552853264672 27.67321560176504 31 30.997359902232425 26.17008573321019 21.515630684839497 21.316923679717892 32 22.363633819372534 29.379950183314207 22.110352355097813 26.146063642215445 33 21.074836976295096 25.436129224856103 25.247450859664344 28.24158293918446 34 18.692218708311177 24.612381405502227 30.738947505900573 25.956452380286027 35 33.13206086218317 21.896485777989234 22.857602641963563 22.11385071786404 36 22.186849887585943 27.95471719235398 29.976071198679016 19.882361721381063 37 21.94219771813458 27.068931739945707 26.974242721073203 24.01462782084651 38 18.26821714104466 25.883919658932953 30.017585103504896 25.830278096517496 39 24.0377170151036 21.53335572285504 28.19190618790406 26.237021074137303 40 14.70198613715448 18.76848301661489 33.062560055227486 33.46697079100314 41 22.199910441913183 24.20353941022268 24.186514044760386 29.41003610310375 42 21.604722323286037 21.114018639276818 28.190506842797568 29.090752194639574 43 25.250249549877324 26.263375406976202 27.627270437435282 20.85910460571119 44 15.921282173276241 32.33373447893052 27.145895720802667 24.599087626990567 45 22.944128814381536 27.476840838487586 26.596186318136443 22.982844028994432 46 23.440429878816712 20.30169880495928 29.49749517225938 26.760376143964628 47 22.190581474536582 17.67372869497075 32.31764201020589 27.818047820286772 48 21.248822217868703 16.25665855046505 30.307949213101605 32.186570018564645 49 20.518597296465256 23.119979849430468 30.932990027333872 25.428432826770404 50 19.892157137126492 24.919537656376818 27.831108374614015 27.35719683188268 51 18.989579543440335 19.23096657430989 33.37134887539298 28.408105006856793 52 21.893453863591837 17.747194313061488 35.42558749172054 24.933764331626133 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 105.0 1 137.5 2 170.0 3 780.5 4 1391.0 5 979.5 6 568.0 7 654.0 8 740.0 9 808.5 10 877.0 11 853.5 12 830.0 13 834.0 14 783.5 15 729.0 16 708.5 17 688.0 18 590.5 19 493.0 20 538.5 21 584.0 22 637.5 23 691.0 24 688.5 25 686.0 26 830.5 27 975.0 28 1265.5 29 1556.0 30 1769.0 31 1982.0 32 2483.5 33 2985.0 34 3486.0 35 3987.0 36 4749.5 37 5512.0 38 6156.5 39 8127.5 40 9454.0 41 15261.0 42 21068.0 43 30030.5 44 38993.0 45 46352.0 46 53711.0 47 59034.5 48 64358.0 49 62527.5 50 60697.0 51 53531.5 52 46366.0 53 37972.5 54 29579.0 55 24298.0 56 19017.0 57 16275.5 58 13534.0 59 12770.0 60 12006.0 61 10490.5 62 8975.0 63 8045.0 64 5793.5 65 4472.0 66 3533.5 67 2595.0 68 2008.0 69 1421.0 70 1114.0 71 807.0 72 705.5 73 604.0 74 467.5 75 331.0 76 316.0 77 301.0 78 212.5 79 124.0 80 86.0 81 48.0 82 27.0 83 6.0 84 3.5 85 1.0 86 0.5 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 428772.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.29655275107684 #Duplication Level Percentage of deduplicated Percentage of total 1 70.60815971735825 19.97967516098686 2 12.000216526374992 6.791295199258281 3 4.537391862092304 3.8517764453400494 4 2.0863977598589796 2.3615145708631267 5 1.199107881999961 1.6965309718621961 6 0.8223801055765216 1.3962313223329315 7 0.590053031927543 1.1687526720709382 8 0.46855712372424735 1.0606841094684802 9 0.41483945937023836 1.0564673980768333 >10 6.719227571640649 44.943725896519595 >50 0.4478933975542953 8.508308327294104 >100 0.09833821828221612 4.606776847029658 >500 0.004131857911017484 0.789893517550692 >1k 0.003305486328813987 1.7883675613462677 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 2623 0.6117470357206162 No Hit CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT 2182 0.5088951703935892 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 1633 0.38085509314973925 No Hit TGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTTG 1210 0.2822012631421828 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 835 0.19474219398654763 No Hit ACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 703 0.16395660164376405 No Hit TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 703 0.16395660164376405 No Hit GCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 590 0.13760226880486598 No Hit CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 547 0.12757362887501983 No Hit ACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 500 0.11661209220751355 No Hit AGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 475 0.11078148759713786 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 459 0.10704990064649743 No Hit ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 451 0.10518410717117721 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5179909135857752 0.0 2 0.0 0.0 0.0 1.8135512580112507 0.0 3 0.0 0.0 0.0 2.84067056617503 0.0 4 0.0 0.0 0.0 3.5158545800565335 0.0 5 0.0 0.0 0.0 6.849094623716101 0.0 6 0.0 0.0 0.0 7.538971761215751 0.0 7 0.0 0.0 0.0 11.382972768744228 0.0 8 0.0 0.0 0.0 15.141613724776805 0.0 9 0.0 0.0 0.0 19.06211226479341 0.0 10 0.0 0.0 0.0 20.502271603556203 0.0 11 0.0 0.0 0.0 21.869431772597093 0.0 12 0.0 0.0 0.0 23.081964307370818 0.0 13 0.0 0.0 0.0 23.48101088690493 0.0 14 0.0 0.0 0.0 23.783269429906802 0.0 15 0.0 0.0 0.0 24.89271687516909 0.0 16 0.0 0.0 0.0 26.03038444674559 0.0 17 0.0 0.0 0.0 27.780498726595955 0.0 18 0.0 0.0 0.0 28.395277676713963 0.0 19 0.0 0.0 0.0 29.289225975576763 0.0 20 0.0 0.0 0.0 30.26060470366535 0.0 21 0.0 0.0 0.0 31.058231414364744 0.0 22 0.0 0.0 0.0 32.04640228373121 0.0 23 0.0 0.0 0.0 32.6530183873947 0.0 24 0.0 0.0 0.0 33.168210610767495 0.0 25 0.0 0.0 0.0 33.70649202839738 0.0 26 0.0 0.0 0.0 34.179237450206635 0.0 27 0.0 0.0 0.0 34.71192148741056 0.0 28 0.0 0.0 0.0 35.14945005737315 0.0 29 0.0 0.0 0.0 35.76119709309376 0.0 30 0.0 0.0 0.0 36.364314833991024 0.0 31 0.0 0.0 0.0 36.855251742184656 0.0 32 0.0 0.0 0.0 37.36857817208213 0.0 33 0.0 0.0 0.0 37.84948644034592 0.0 34 0.0 0.0 0.0 38.52257143656769 0.0 35 0.0 0.0 0.0 39.01000998199509 0.0 36 0.0 0.0 0.0 39.47132741876802 0.0 37 0.0 0.0 0.0 39.8885654846865 0.0 38 0.0 0.0 0.0 40.295774910675135 0.0 39 0.0 0.0 0.0 40.79557433787654 0.0 40 0.0 0.0 0.0 41.254093084436484 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGGTC 75 0.0 46.000004 4 GTGCACG 20 6.3070055E-4 46.0 12 TCGTTTA 25 3.4135475E-5 46.0 3 AGCAACG 20 6.3070055E-4 46.0 9 GGGTGCG 30 1.8586543E-6 46.0 6 TCGTTGA 20 6.3070055E-4 46.0 23 ATCTCGG 20 6.3070055E-4 46.0 1 GTACCGG 20 6.3070055E-4 46.0 1 CCGGGCT 20 6.3070055E-4 46.0 4 TTAATCG 20 6.3070055E-4 46.0 19 CTCAACC 20 6.3070055E-4 46.0 35 CACGGGT 30 1.8586543E-6 46.0 3 GCAACGA 20 6.3070055E-4 46.0 10 CTATACT 20 6.3070055E-4 46.0 13 CGTTGAT 20 6.3070055E-4 46.0 24 GCTATCC 25 3.4135475E-5 46.0 8 ATAGCGG 65 0.0 46.0 1 TAAACGG 20 6.3070055E-4 46.0 1 TTCGTGG 20 6.3070055E-4 46.0 1 CGTCTGG 20 6.3070055E-4 46.0 32 >>END_MODULE