##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544896_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 656404 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.830611940207554 34.0 31.0 34.0 31.0 34.0 2 33.12317261930153 34.0 33.0 34.0 31.0 34.0 3 33.17492123753055 34.0 33.0 34.0 31.0 34.0 4 36.491720038269115 37.0 37.0 37.0 35.0 37.0 5 36.47262204374135 37.0 37.0 37.0 35.0 37.0 6 36.61354135562855 37.0 37.0 37.0 35.0 37.0 7 36.42691238932121 37.0 37.0 37.0 35.0 37.0 8 36.47661958184289 37.0 37.0 37.0 35.0 37.0 9 38.24885588753268 39.0 39.0 39.0 37.0 39.0 10 38.00886496730672 39.0 39.0 39.0 35.0 39.0 11 37.17050017976734 39.0 35.0 39.0 35.0 39.0 12 37.061660197073756 39.0 35.0 39.0 35.0 39.0 13 37.06456999043272 39.0 35.0 39.0 35.0 39.0 14 38.31226500752585 40.0 35.0 41.0 35.0 41.0 15 38.374118683006195 40.0 35.0 41.0 35.0 41.0 16 38.39890524737814 40.0 35.0 41.0 35.0 41.0 17 38.4893739221577 40.0 36.0 41.0 35.0 41.0 18 38.461109316823176 40.0 36.0 41.0 35.0 41.0 19 38.361690361423754 40.0 35.0 41.0 35.0 41.0 20 38.272822834717644 40.0 35.0 41.0 35.0 41.0 21 38.2465798502142 40.0 35.0 41.0 35.0 41.0 22 38.21057610861604 40.0 35.0 41.0 35.0 41.0 23 38.195295884851404 40.0 35.0 41.0 35.0 41.0 24 38.13813139468986 40.0 35.0 41.0 35.0 41.0 25 38.114712890232234 40.0 35.0 41.0 35.0 41.0 26 38.07613756162363 40.0 35.0 41.0 35.0 41.0 27 38.053410704383275 40.0 35.0 41.0 35.0 41.0 28 38.078652780909316 40.0 35.0 41.0 35.0 41.0 29 38.09608564237878 40.0 35.0 41.0 35.0 41.0 30 37.994535377602816 40.0 35.0 41.0 35.0 41.0 31 37.92518479473007 40.0 35.0 41.0 35.0 41.0 32 37.85001005478333 40.0 35.0 41.0 35.0 41.0 33 37.72308517315555 40.0 35.0 41.0 35.0 41.0 34 37.6465576078147 40.0 35.0 41.0 35.0 41.0 35 37.53712804918922 40.0 35.0 41.0 35.0 41.0 36 37.46994990889757 40.0 35.0 41.0 34.0 41.0 37 37.36695388815425 39.0 35.0 41.0 34.0 41.0 38 37.37930451368364 39.0 35.0 41.0 35.0 41.0 39 37.248983857502395 39.0 35.0 41.0 34.0 41.0 40 37.15314044399486 39.0 35.0 41.0 34.0 41.0 41 37.12828989463806 39.0 35.0 41.0 34.0 41.0 42 37.0268889281601 39.0 35.0 41.0 34.0 41.0 43 36.91504926843834 38.0 35.0 41.0 34.0 41.0 44 36.84763346963151 38.0 35.0 41.0 34.0 41.0 45 36.825633299004885 38.0 35.0 41.0 34.0 41.0 46 36.89255245245306 38.0 35.0 41.0 34.0 41.0 47 36.8061605352801 38.0 35.0 41.0 34.0 41.0 48 36.832345628606774 38.0 35.0 41.0 34.0 41.0 49 36.708310735461694 38.0 35.0 41.0 34.0 41.0 50 36.54934613439284 37.0 35.0 40.0 34.0 41.0 51 36.342089627729266 37.0 35.0 40.0 33.0 41.0 52 36.03868958751013 36.0 35.0 39.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 8.0 15 11.0 16 11.0 17 22.0 18 56.0 19 133.0 20 194.0 21 355.0 22 571.0 23 944.0 24 1469.0 25 2555.0 26 3599.0 27 4031.0 28 4209.0 29 4470.0 30 5272.0 31 6479.0 32 8478.0 33 12021.0 34 34121.0 35 159865.0 36 22132.0 37 31432.0 38 59907.0 39 292083.0 40 1973.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.539423891383965 23.146720617180883 25.64350613341783 20.67034935801732 2 26.096123728679288 23.891383964753416 27.012937154557253 22.999555152010043 3 24.669715601976833 25.605876868513906 27.742365981925765 21.9820415475835 4 26.42869330473306 27.456414037696298 23.93465000213283 22.18024265543781 5 23.082735632323995 35.560417060225106 20.553500588052483 20.80334671939842 6 86.13719599514933 2.6210992011017606 8.308145593262687 2.9335592104862247 7 86.22189992748368 2.037007696479607 5.641647521952944 6.099444854083766 8 75.55834516547736 3.9687448583494307 12.909427730483056 7.563482245690155 9 51.73338370881348 18.44930865747314 14.794547260528576 15.022760373184807 10 44.04467370704627 17.99120663493824 27.354190407127316 10.609929250888172 11 41.452215403928065 15.979031206391186 24.2797118847539 18.289041504926846 12 18.705857977708853 36.219614749453086 29.33620148567041 15.738325787167659 13 12.14023680538205 39.738027190571664 28.515365537077773 19.606370466968514 14 10.04122461167208 22.017080944052747 50.3266281131742 17.615066331100966 15 10.957581001943925 18.051535334946163 50.18007202881153 20.81081163429839 16 12.30111333873651 21.235245367182408 29.332088165215325 37.13155312886576 17 16.321503220577572 22.654340924186933 37.3347816283874 23.689374226848102 18 22.26845052741909 28.39470813706193 28.244648113052328 21.09219322246665 19 25.061090426018122 22.823901134057685 26.439357468875873 25.67565097104832 20 16.1662634596986 34.66965466389602 27.354190407127316 21.809891469278067 21 18.64720507492337 25.143509180321878 24.70582141486036 31.503464329894392 22 14.534189310241864 32.62914302776949 22.234325202162083 30.60234245982657 23 14.481173179931872 22.68739983302966 40.16794535072912 22.663481636309346 24 15.851061236677413 23.129200918946257 36.13003577065344 24.88970207372289 25 12.94995155422575 31.708063936234392 30.655510935338604 24.686473574201255 26 17.122381947702937 31.00742835205148 26.97454616364312 24.895643536602456 27 17.877252423812166 28.41527473933736 36.62348188006167 17.08399095678881 28 14.466852730940092 25.81489448571307 31.9062650440887 27.811987739258136 29 19.53019786594841 30.162064825930372 26.757758941139908 23.54997836698131 30 25.3538979043394 28.362410954229407 21.07756808307079 25.2061230583604 31 30.2690111577626 26.737039993662435 21.16501422904187 21.82893461953309 32 24.725016910317425 29.863772920335645 23.069938635352617 22.34127153399431 33 19.032638436085094 30.063649825412398 23.18160766844809 27.722104070054414 34 15.57805863462136 31.452123996806847 29.49098421094326 23.478833157628536 35 25.95840366603494 24.13787850165447 25.026051029548874 24.877666802761713 36 21.579088488187153 29.258962468236028 27.011566047738896 22.150382995837926 37 16.666108067592518 31.046581068975815 24.69150096586858 27.595809897563083 38 18.58809513653177 30.707460649234314 24.294946404957923 26.409497809275994 39 28.034259389034798 21.52409187025064 24.09446011907301 26.34718862164155 40 18.187579600368068 20.000182814242446 29.524043119785986 32.288194465603496 41 22.94592964089189 24.24817642793158 23.7935783450436 29.01231558613293 42 21.587010438693245 22.782920274708868 27.85571081224368 27.77435847435421 43 23.2475731409315 27.910402739776114 27.08057842426311 21.76144569502928 44 14.712128506224825 33.13934710940213 27.36272173844157 24.78580264593147 45 21.31888288310248 29.4794059755882 24.810025533055864 24.391685608253454 46 23.485079310912184 23.778953205647742 26.623238127738404 26.11272935570167 47 21.38515304598997 19.809141930884028 30.801000603286997 28.004704419839 48 21.89383367560222 18.378315793322404 27.703060919799395 32.024789611275985 49 20.989664901493594 23.768898422313086 30.44359875930067 24.797837916892647 50 19.225964497474116 25.38741384878825 27.064277487644805 28.322344166092833 51 18.236634755425012 20.708283313325328 32.19983424842018 28.85524768282948 52 20.706759861304928 17.618722615949935 36.153192241363556 25.52132528138159 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 149.0 1 197.5 2 246.0 3 1304.0 4 2362.0 5 1637.5 6 913.0 7 1056.5 8 1200.0 9 1304.0 10 1408.0 11 1356.5 12 1305.0 13 1276.5 14 1213.5 15 1179.0 16 1120.5 17 1062.0 18 1025.5 19 989.0 20 1037.5 21 1086.0 22 1060.0 23 1034.0 24 1035.0 25 1036.0 26 1329.5 27 1623.0 28 2491.5 29 3360.0 30 3598.5 31 3837.0 32 4116.5 33 4396.0 34 5460.0 35 6524.0 36 7852.0 37 9180.0 38 10216.0 39 13697.0 40 16142.0 41 25672.0 42 35202.0 43 48050.5 44 60899.0 45 73559.5 46 86220.0 47 93194.0 48 100168.0 49 98256.5 50 96345.0 51 82314.0 52 68283.0 53 56949.0 54 45615.0 55 35842.5 56 26070.0 57 22239.5 58 18409.0 59 16555.0 60 14701.0 61 13701.0 62 12701.0 63 10170.0 64 6303.0 65 4967.0 66 3881.0 67 2795.0 68 1999.5 69 1204.0 70 1291.0 71 1378.0 72 1187.0 73 996.0 74 749.0 75 502.0 76 549.5 77 597.0 78 371.5 79 146.0 80 81.0 81 16.0 82 14.0 83 12.0 84 7.0 85 2.0 86 2.0 87 2.0 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 656404.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.657849031307727 #Duplication Level Percentage of deduplicated Percentage of total 1 69.3048329823952 17.78212941802293 2 12.885269038734206 6.612165754472518 3 5.138346192887731 3.955167326631247 4 2.5116524019526234 2.5777439259368737 5 1.4475391676446743 1.8570370715165954 6 0.911009863237437 1.4024732122187076 7 0.6283224840561217 1.128498240722176 8 0.45066230241751 0.9250420255624017 9 0.3636504316601355 0.839743908813508 >10 5.126956103173836 35.157951200171176 >50 1.0141799750578697 16.63358654623528 >100 0.2092563606215533 8.323580873426735 >500 0.004755826377762575 0.9135042303638028 >1k 0.003566869783321931 1.89137626590602 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 3304 0.5033485475408437 No Hit CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTT 2887 0.4398205982900774 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 2635 0.4014296073759453 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1476 0.22486151821134542 No Hit ACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 1061 0.16163825936465956 No Hit TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 1037 0.1579819745156946 No Hit AGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 886 0.13497784900762336 No Hit CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 870 0.13254032577498004 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 868 0.13223563537089963 No Hit GCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 855 0.13025514774437694 No Hit ACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 763 0.1162393891566779 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG 702 0.10694633183222528 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4477425487961682 0.0 2 0.0 0.0 0.0 1.6502032284995216 0.0 3 0.0 0.0 0.0 2.6706113917648278 0.0 4 0.0 0.0 0.0 3.269328035782841 0.0 5 0.0 0.0 0.0 6.672262813754943 0.0 6 0.0 0.0 0.0 7.389046989354117 0.0 7 0.0 0.0 0.0 11.217786607028598 0.0 8 0.0 0.0 0.0 15.028549490862336 0.0 9 0.0 0.0 0.0 19.048482337097276 0.0 10 0.0 0.0 0.0 20.43055801000603 0.0 11 0.0 0.0 0.0 21.854528613475846 0.0 12 0.0 0.0 0.0 23.006867721707973 0.0 13 0.0 0.0 0.0 23.438766369491958 0.0 14 0.0 0.0 0.0 23.789007988982394 0.0 15 0.0 0.0 0.0 24.949878428528773 0.0 16 0.0 0.0 0.0 26.137104588028105 0.0 17 0.0 0.0 0.0 28.174264629709754 0.0 18 0.0 0.0 0.0 28.875204904296744 0.0 19 0.0 0.0 0.0 29.890585675894723 0.0 20 0.0 0.0 0.0 30.89636869976417 0.0 21 0.0 0.0 0.0 31.694048177646692 0.0 22 0.0 0.0 0.0 32.67027623232034 0.0 23 0.0 0.0 0.0 33.31820037659734 0.0 24 0.0 0.0 0.0 33.865729032729845 0.0 25 0.0 0.0 0.0 34.45271509619076 0.0 26 0.0 0.0 0.0 34.9639855942377 0.0 27 0.0 0.0 0.0 35.45225196677656 0.0 28 0.0 0.0 0.0 35.92848306835425 0.0 29 0.0 0.0 0.0 36.67604097476554 0.0 30 0.0 0.0 0.0 37.34742628015673 0.0 31 0.0 0.0 0.0 37.84041535395884 0.0 32 0.0 0.0 0.0 38.312533135081445 0.0 33 0.0 0.0 0.0 38.809483184136596 0.0 34 0.0 0.0 0.0 39.54393940317244 0.0 35 0.0 0.0 0.0 40.05262003278469 0.0 36 0.0 0.0 0.0 40.53981998890927 0.0 37 0.0 0.0 0.0 41.00508223594006 0.0 38 0.0 0.0 0.0 41.457852176403556 0.0 39 0.0 0.0 0.0 41.94627089414446 0.0 40 0.0 0.0 0.0 42.45464683335263 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGCGG 150 0.0 46.000004 1 CTTCGAT 20 6.3094666E-4 46.0 13 CGGGTCA 25 3.415544E-5 46.0 5 AAGTAGG 120 0.0 46.0 1 TCGTTGA 20 6.3094666E-4 46.0 23 CAAACGT 20 6.3094666E-4 46.0 44 CAAACGG 40 5.6043064E-9 46.0 1 ACGTTTG 20 6.3094666E-4 46.0 32 TTTACGG 30 1.860175E-6 46.0 1 CAACGCA 25 3.415544E-5 46.0 16 CAACGAG 20 6.3094666E-4 46.0 21 CATGCGG 110 0.0 46.0 1 CCGATGT 25 3.415544E-5 46.0 11 GGGTACG 25 3.415544E-5 46.0 6 GCTATCG 20 6.3094666E-4 46.0 11 TGAACGA 25 3.415544E-5 46.0 27 TGTATCG 20 6.3094666E-4 46.0 12 TTCAACG 20 6.3094666E-4 46.0 19 TACGGGT 25 3.415544E-5 46.0 3 TAACGCA 25 3.415544E-5 46.0 24 >>END_MODULE