##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544895_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 428137 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8348425854341 34.0 33.0 34.0 31.0 34.0 2 33.17346550286474 34.0 33.0 34.0 31.0 34.0 3 33.303321133188675 34.0 34.0 34.0 31.0 34.0 4 36.561264268213215 37.0 37.0 37.0 35.0 37.0 5 36.546061190693635 37.0 37.0 37.0 35.0 37.0 6 36.35606359646562 37.0 37.0 37.0 35.0 37.0 7 36.16156277079533 37.0 37.0 37.0 35.0 37.0 8 36.33199653381978 37.0 37.0 37.0 35.0 37.0 9 38.201036116943875 39.0 39.0 39.0 37.0 39.0 10 38.03591840929422 39.0 39.0 39.0 35.0 39.0 11 37.32906522912059 39.0 35.0 39.0 35.0 39.0 12 37.28820214090349 39.0 35.0 39.0 35.0 39.0 13 37.29807047744063 39.0 35.0 39.0 35.0 39.0 14 38.53002426793293 41.0 35.0 41.0 35.0 41.0 15 38.55302157954113 41.0 35.0 41.0 35.0 41.0 16 38.609265258550415 41.0 35.0 41.0 35.0 41.0 17 38.711578303206686 41.0 36.0 41.0 35.0 41.0 18 38.69898887505635 41.0 36.0 41.0 35.0 41.0 19 38.63272503894781 41.0 35.0 41.0 35.0 41.0 20 38.5524610113118 41.0 35.0 41.0 35.0 41.0 21 38.533822117686626 41.0 35.0 41.0 35.0 41.0 22 38.496847971560506 40.0 35.0 41.0 35.0 41.0 23 38.45465820520067 40.0 35.0 41.0 35.0 41.0 24 38.42188131369164 40.0 35.0 41.0 35.0 41.0 25 38.38438163485053 40.0 35.0 41.0 35.0 41.0 26 38.338592553318215 40.0 35.0 41.0 35.0 41.0 27 38.41241471771886 40.0 35.0 41.0 35.0 41.0 28 38.41096658312643 40.0 36.0 41.0 35.0 41.0 29 38.43448709174867 40.0 36.0 41.0 35.0 41.0 30 38.33451909085176 40.0 35.0 41.0 35.0 41.0 31 38.26905406447002 40.0 35.0 41.0 35.0 41.0 32 38.208328175327054 40.0 35.0 41.0 35.0 41.0 33 38.144449089894124 40.0 35.0 41.0 35.0 41.0 34 38.034388525168346 40.0 35.0 41.0 35.0 41.0 35 37.980854259267474 40.0 35.0 41.0 35.0 41.0 36 37.928462151133864 40.0 35.0 41.0 35.0 41.0 37 37.847331578443345 40.0 35.0 41.0 35.0 41.0 38 37.86466247953342 40.0 35.0 41.0 35.0 41.0 39 37.80291355337194 40.0 35.0 41.0 35.0 41.0 40 37.7483165435363 40.0 35.0 41.0 35.0 41.0 41 37.72711305026195 40.0 35.0 41.0 35.0 41.0 42 37.64901421741172 40.0 35.0 41.0 35.0 41.0 43 37.562301319437466 40.0 35.0 41.0 35.0 41.0 44 37.41865337497109 39.0 35.0 41.0 35.0 41.0 45 37.43777108729215 39.0 35.0 41.0 35.0 41.0 46 37.38830094105391 39.0 35.0 41.0 35.0 41.0 47 37.292464795147346 39.0 35.0 41.0 35.0 41.0 48 37.24802574876733 39.0 35.0 41.0 35.0 41.0 49 37.12954965349876 39.0 35.0 41.0 35.0 41.0 50 36.96496682136792 38.0 35.0 41.0 35.0 41.0 51 36.71122327666144 37.0 35.0 40.0 34.0 41.0 52 36.138429988531705 37.0 35.0 39.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 2.0 15 3.0 16 2.0 17 16.0 18 40.0 19 63.0 20 115.0 21 195.0 22 337.0 23 476.0 24 850.0 25 1327.0 26 1978.0 27 2208.0 28 2142.0 29 2094.0 30 2506.0 31 3146.0 32 4130.0 33 6135.0 34 19154.0 35 97532.0 36 12900.0 37 19071.0 38 39472.0 39 211565.0 40 676.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.775982921354615 22.900146448449913 24.782020708324673 22.541849921870803 2 25.798517764173617 24.216313936894032 26.996732354363207 22.988435944569144 3 24.460161116651914 25.574991182728894 27.783863576378586 22.180984124240606 4 26.435696984843638 27.00350588713426 24.254619432564812 22.306177695457297 5 23.10662241291923 35.121000988001505 20.736820223433153 21.035556375646113 6 84.49374849639251 2.5024700037604783 9.22671948465094 3.7770620151960705 7 84.30502385918525 1.8631886522304777 6.593450227380488 7.238337261203774 8 72.73559631613246 3.9826036992831737 14.691091870125684 8.590708114458689 9 49.65910444553963 17.979992385614885 15.931115507419355 16.429787661426133 10 41.7707416084104 17.509115072978975 29.74118097711714 10.978962341493494 11 39.37267743736234 15.71553030922345 25.264576525738256 19.647215727675952 12 18.146294293648996 33.70720119961601 31.57353837673455 16.572966130000445 13 11.997561528202421 37.28572863359159 29.884826585882557 20.83188325232344 14 10.002639342079755 21.665027783162866 49.418994387310605 18.913338487446776 15 10.839053854256932 17.932577656217518 49.72100052086132 21.507367968664237 16 12.063895435339623 21.965632496140255 30.40965859059133 35.5608134779288 17 15.450428250770198 22.770047905226598 37.8304140964224 23.9491097475808 18 21.33008826613911 29.36560026346707 28.81437483796075 20.489936632433075 19 23.704094717345146 23.04355848711978 26.654085024186188 26.59826177134889 20 15.38502862401521 35.76145019000928 26.777643604733996 22.075877581241517 21 17.72797025251263 25.3568367134819 24.835274690110875 32.07991834389459 22 14.351948091381963 33.254542354433276 22.058593394170558 30.334916160014203 23 13.876165806739433 23.081630412695002 39.46376977462822 23.57843400593735 24 16.470895998243552 23.288573517355427 35.012624463664665 25.227906020736352 25 12.85780019012606 31.150542933687113 31.274802224521594 24.716854651665237 26 17.736845916143665 29.214947551835042 26.91288069005949 26.135325841961805 27 18.845369589640697 27.746959501281133 36.18094208162341 17.226728827454764 28 15.210084622445619 25.89474864354167 30.780100762139224 28.115065971873488 29 20.442755473131264 29.581886171949634 25.927214886823613 24.048143468095493 30 24.914922092694628 27.65610073411081 20.346758163858762 27.082219009335795 31 30.85764603386299 26.585415416093443 20.118793750598524 22.438144799445038 32 24.338938237059633 28.89472295083116 23.401621443603332 23.364717368505875 33 19.419484884511267 29.652891480997905 22.73898308251798 28.18864055197285 34 15.907758497864002 31.714381144353325 29.592863966440646 22.784996391342023 35 24.590493229970782 24.3566895643217 25.006715140247167 26.046102065460353 36 21.78601709265959 29.27170508505455 26.251176609356353 22.691101212929507 37 16.39335072651978 30.761181584399388 24.809348409504434 28.0361192795764 38 19.049509853154483 30.400315786769188 23.249333741302433 27.300840618773897 39 28.482938872370294 20.713229643782245 24.156286422336777 26.647545061510687 40 18.94533759053761 19.173302003797847 29.096761083484957 32.78459932217958 41 23.190707647318497 24.032961411884514 23.54573419255986 29.23059674823713 42 21.485412379682202 21.855620981134543 28.192844813692812 28.466121825490436 43 24.359258835372792 26.92409205464606 27.17658132793942 21.54006778204173 44 14.901304956123857 31.24350383171742 28.734026725090335 25.12116448706839 45 20.94796758981354 28.72585177174596 25.150594319108137 25.175586319332368 46 23.9757367384739 21.853752420370114 27.32606618909368 26.844444652062304 47 21.201858283680224 18.431016240128745 31.524255086572754 28.842870389618273 48 21.487514510542187 17.419657726381978 27.49120024665002 33.60162751642582 49 20.703186129673444 22.2237274517269 31.229256055888655 25.843830362711 50 19.74414731733067 23.666723502056584 28.19774978569944 28.39137939491331 51 17.978590965041562 19.22165101357743 32.86377958457223 29.93597843680878 52 20.440419772175726 16.6164101677734 37.06126777176465 25.881902288286224 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 74.0 1 113.5 2 153.0 3 839.0 4 1525.0 5 1088.0 6 651.0 7 712.5 8 774.0 9 868.5 10 963.0 11 917.0 12 871.0 13 856.0 14 804.5 15 768.0 16 703.5 17 639.0 18 613.0 19 587.0 20 632.0 21 677.0 22 680.5 23 684.0 24 682.0 25 680.0 26 799.5 27 919.0 28 1361.0 29 1803.0 30 1915.5 31 2028.0 32 2279.5 33 2531.0 34 3099.0 35 3667.0 36 4490.5 37 5314.0 38 5993.0 39 7990.0 40 9308.0 41 14978.5 42 20649.0 43 28481.0 44 36313.0 45 45118.5 46 53924.0 47 61014.5 48 68105.0 49 67626.0 50 67147.0 51 57763.5 52 48380.0 53 39801.5 54 31223.0 55 24334.0 56 17445.0 57 14544.0 58 11643.0 59 10598.5 60 9554.0 61 8885.5 62 8217.0 63 6681.5 64 4176.5 65 3207.0 66 2519.5 67 1832.0 68 1298.5 69 765.0 70 826.0 71 887.0 72 788.0 73 689.0 74 523.5 75 358.0 76 377.5 77 397.0 78 244.0 79 91.0 80 57.5 81 24.0 82 15.5 83 7.0 84 5.0 85 3.0 86 2.0 87 1.0 88 0.5 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 428137.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.809665112465535 #Duplication Level Percentage of deduplicated Percentage of total 1 71.01310751375284 21.168769535804817 2 12.054131616761907 7.1865925343451025 3 4.430973983134297 3.9625755167784265 4 2.052026563767654 2.4468089867118863 5 1.2588544144517624 1.8763014260077961 6 0.8255082519825689 1.4764874723506314 7 0.5721283277267546 1.1938467695622637 8 0.4966272151785763 1.1843432776167773 9 0.4054611296374602 1.0877994441553196 >10 6.367859964142279 41.83079150481632 >50 0.413313597954984 8.330787771068254 >100 0.10136398124751507 5.037683534621968 >500 0.005500371075446555 1.2016234961924348 >1k 0.00314306918596946 2.015588729968012 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 2978 0.6955717445584008 No Hit CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTT 2312 0.5400140609197523 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 1990 0.4648044901515169 No Hit TGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTTG 1325 0.30948037660842204 Illumina Single End Adapter 2 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 972 0.22703013287802737 No Hit ACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 847 0.1978338709338366 No Hit TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 830 0.19386317930942665 No Hit GCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 671 0.15672553411641602 No Hit CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 670 0.15649196402086246 No Hit AGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 593 0.13850706666324097 No Hit ACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 547 0.1277628422677788 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5465540235952511 0.0 2 0.0 0.0 0.0 2.05144614924662 0.0 3 0.0 0.0 0.0 3.2664777863160626 0.0 4 0.0 0.0 0.0 3.9968514751119386 0.0 5 0.0 0.0 0.0 7.958667435890848 0.0 6 0.0 0.0 0.0 8.791811966730275 0.0 7 0.0 0.0 0.0 13.308824044639916 0.0 8 0.0 0.0 0.0 17.72540098146154 0.0 9 0.0 0.0 0.0 22.53694494986418 0.0 10 0.0 0.0 0.0 24.166096366350022 0.0 11 0.0 0.0 0.0 25.7212060625454 0.0 12 0.0 0.0 0.0 27.076613327042512 0.0 13 0.0 0.0 0.0 27.565475537036043 0.0 14 0.0 0.0 0.0 27.966515391101446 0.0 15 0.0 0.0 0.0 29.223589645370524 0.0 16 0.0 0.0 0.0 30.539757133814643 0.0 17 0.0 0.0 0.0 32.577889787614716 0.0 18 0.0 0.0 0.0 33.348671102941346 0.0 19 0.0 0.0 0.0 34.347883971719334 0.0 20 0.0 0.0 0.0 35.40992719620122 0.0 21 0.0 0.0 0.0 36.248210269142824 0.0 22 2.3357009555352608E-4 0.0 0.0 37.29834141875148 0.0 23 2.3357009555352608E-4 0.0 0.0 37.991811032449895 0.0 24 2.3357009555352608E-4 0.0 0.0 38.580874813435884 0.0 25 2.3357009555352608E-4 0.0 0.0 39.1809163889129 0.0 26 2.3357009555352608E-4 0.0 0.0 39.71439048715715 0.0 27 2.3357009555352608E-4 0.0 0.0 40.19904843543072 0.0 28 2.3357009555352608E-4 0.0 0.0 40.695852028673066 0.0 29 2.3357009555352608E-4 0.0 0.0 41.39119020313591 0.0 30 2.3357009555352608E-4 0.0 0.0 42.075083442916636 0.0 31 2.3357009555352608E-4 0.0 0.0 42.56861705482124 0.0 32 2.3357009555352608E-4 0.0 0.0 43.04766932080152 0.0 33 2.3357009555352608E-4 0.0 0.0 43.526721586781804 0.0 34 2.3357009555352608E-4 0.0 0.0 44.24354821003557 0.0 35 2.3357009555352608E-4 0.0 0.0 44.75016174729117 0.0 36 2.3357009555352608E-4 0.0 0.0 45.23762253671138 0.0 37 2.3357009555352608E-4 0.0 0.0 45.67416504530092 0.0 38 2.3357009555352608E-4 0.0 0.0 46.13383099335026 0.0 39 2.3357009555352608E-4 0.0 0.0 46.605876156463935 0.0 40 2.3357009555352608E-4 0.0 0.0 47.10338045999295 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGCGG 75 0.0 46.000004 1 AGCGTGG 25 3.4135395E-5 46.0 1 CGGGTCC 20 6.3069945E-4 46.0 5 CGGGTAT 45 3.092282E-10 46.0 5 AGCCGTG 20 6.3069945E-4 46.0 14 CAAACGG 20 6.3069945E-4 46.0 1 ACCGGGT 20 6.3069945E-4 46.0 3 CCGGGAT 20 6.3069945E-4 46.0 4 CATGCGG 160 0.0 46.0 1 CCGGCTT 25 3.4135395E-5 46.0 4 ATAATAC 20 6.3069945E-4 46.0 10 TATGGGT 30 1.858647E-6 46.0 3 TATGGGA 115 0.0 46.0 3 CACGCTT 20 6.3069945E-4 46.0 22 ATAGCGG 85 0.0 46.0 1 GCAGTGC 30 1.858647E-6 46.0 38 CAACCGG 30 1.858647E-6 46.0 1 TGAACGA 30 1.858647E-6 46.0 27 CGACCCC 30 1.858647E-6 46.0 19 TACGGGT 20 6.3069945E-4 46.0 3 >>END_MODULE