##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544893_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 418598 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92715445367632 34.0 33.0 34.0 31.0 34.0 2 33.254435042690126 34.0 33.0 34.0 31.0 34.0 3 33.367187611980945 34.0 34.0 34.0 31.0 34.0 4 36.610406643127774 37.0 37.0 37.0 35.0 37.0 5 36.60075298974195 37.0 37.0 37.0 35.0 37.0 6 36.41513098485898 37.0 37.0 37.0 35.0 37.0 7 36.251420217010114 37.0 37.0 37.0 35.0 37.0 8 36.39859483322902 37.0 37.0 37.0 35.0 37.0 9 38.267748532004454 39.0 39.0 39.0 37.0 39.0 10 38.10156522486968 39.0 39.0 39.0 35.0 39.0 11 37.27656844992093 39.0 35.0 39.0 35.0 39.0 12 37.21242098624456 39.0 35.0 39.0 35.0 39.0 13 37.1942125858222 39.0 35.0 39.0 35.0 39.0 14 38.38102427627461 40.0 35.0 41.0 35.0 41.0 15 38.444992570437506 40.0 35.0 41.0 35.0 41.0 16 38.49639272046211 40.0 35.0 41.0 35.0 41.0 17 38.621355094864285 41.0 36.0 41.0 35.0 41.0 18 38.60396848527704 40.0 36.0 41.0 35.0 41.0 19 38.50354277851304 40.0 35.0 41.0 35.0 41.0 20 38.41157865063856 40.0 35.0 41.0 35.0 41.0 21 38.36690094075939 40.0 35.0 41.0 35.0 41.0 22 38.3426413886354 40.0 35.0 41.0 35.0 41.0 23 38.322937520007265 40.0 35.0 41.0 35.0 41.0 24 38.29766028504675 40.0 35.0 41.0 35.0 41.0 25 38.26168543566859 40.0 35.0 41.0 35.0 41.0 26 38.220199332056055 40.0 35.0 41.0 35.0 41.0 27 38.2895642119647 40.0 35.0 41.0 35.0 41.0 28 38.326468353886064 40.0 35.0 41.0 35.0 41.0 29 38.31418210311564 40.0 36.0 41.0 35.0 41.0 30 38.2388353503839 40.0 35.0 41.0 35.0 41.0 31 38.14711489304774 40.0 35.0 41.0 35.0 41.0 32 38.09350259676348 40.0 35.0 41.0 35.0 41.0 33 38.00992360211946 40.0 35.0 41.0 35.0 41.0 34 37.88749587910119 40.0 35.0 41.0 35.0 41.0 35 37.84241682951185 40.0 35.0 41.0 35.0 41.0 36 37.80153990224511 40.0 35.0 41.0 35.0 41.0 37 37.7187564202409 40.0 35.0 41.0 35.0 41.0 38 37.72283909622119 40.0 35.0 41.0 35.0 41.0 39 37.64119035446897 40.0 35.0 41.0 35.0 41.0 40 37.612996239829144 40.0 35.0 41.0 35.0 41.0 41 37.55842359495268 39.0 35.0 41.0 35.0 41.0 42 37.50215958986904 39.0 35.0 41.0 35.0 41.0 43 37.45631608368888 39.0 35.0 41.0 35.0 41.0 44 37.33479854179905 39.0 35.0 41.0 35.0 41.0 45 37.37577102613964 39.0 35.0 41.0 35.0 41.0 46 37.34639200378406 39.0 35.0 41.0 35.0 41.0 47 37.291367851733646 39.0 35.0 41.0 35.0 41.0 48 37.280304731508515 39.0 35.0 41.0 35.0 41.0 49 37.20541187487757 39.0 35.0 41.0 35.0 41.0 50 37.13830930869235 39.0 35.0 41.0 35.0 41.0 51 37.09153650996899 38.0 35.0 41.0 34.0 41.0 52 36.66780777739024 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 4.0 16 10.0 17 10.0 18 18.0 19 70.0 20 89.0 21 136.0 22 265.0 23 425.0 24 763.0 25 1356.0 26 1929.0 27 2156.0 28 1826.0 29 1926.0 30 2185.0 31 2744.0 32 3750.0 33 5784.0 34 18950.0 35 105477.0 36 12009.0 37 18735.0 38 35633.0 39 201226.0 40 1119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.540040802870532 21.89690347302185 24.48387235486075 23.079183369246866 2 25.855833042680565 25.301602014343118 26.46453160311325 22.378033339863066 3 24.5469400236026 24.984830314526107 27.61073870395941 22.857490957911885 4 26.019474531650893 27.74690753419749 23.78773907185414 22.445878862297477 5 22.429156374373505 34.89816004854299 21.25165433184105 21.42102924524245 6 85.13848608927897 2.568574145122528 8.72531641336079 3.567623352237708 7 85.13753051854046 2.0279599998088855 6.290283278945433 6.544226202705221 8 75.08946531039327 3.878661627623639 13.35433996340164 7.677533098581455 9 50.36908919775058 18.03305319184516 15.229169752363845 16.368687858040413 10 44.11105643122996 17.44919947061381 27.69267889478688 10.747065203369342 11 42.08715760705976 15.669687862818266 23.755249666744703 18.487904863377274 12 17.91384574221568 37.1413623572019 28.836019283417503 16.108772617164917 13 11.476165676854643 40.19942761312763 28.58398750113474 19.740419208882987 14 9.80320020640328 21.7686181013765 49.87195352103928 18.55622817118094 15 10.325897400369806 16.933907949870758 51.77067257846431 20.96952207129513 16 10.494794528401952 21.350794795961757 29.94495912546166 38.20945155017463 17 16.574135566820672 21.58395405615889 37.658087234052715 24.183823142967718 18 23.07201658870802 27.713940343718797 27.922493657399222 21.291549410173964 19 24.971930109556183 21.958776678340556 26.935389084515453 26.133904127587805 20 15.262136942842536 34.32338424932752 27.75144649520542 22.663032312624523 21 17.827844375749528 25.30518540461254 24.26050769473337 32.606462524904565 22 13.66298931194129 34.30594508334966 22.24425343647127 29.786812168237788 23 13.945121572487206 22.666376810209318 40.88457183264134 22.503929784662134 24 16.148667695497828 22.81425138199418 36.947142604599165 24.08993831790883 25 12.169910033014968 32.099532248123495 31.116011065509152 24.61454665335238 26 15.641020740662878 29.621498430475064 27.678345333709192 27.05913549515287 27 16.418377536443078 25.89811704785976 38.72641531971008 18.95709009598708 28 13.471158486184837 22.814490274678807 33.275123149178924 30.43922808995743 29 15.897352591268952 28.28226604044931 29.97314846224779 25.847232906033952 30 25.130793744833944 24.512061691646878 21.248309834256254 29.108834729262924 31 26.55435525253346 22.698627322634128 25.211061686869023 25.53595573796339 32 21.914820424368962 24.480288964591328 24.08062150320833 29.52426910783138 33 15.274081577073947 24.417699081218736 27.354406853353336 32.95381248835398 34 15.13361267851256 20.04166288419916 31.376881877123157 33.44784256016513 35 28.14060267846478 21.15012494087406 23.784155681584718 26.92511669907644 36 20.543098629233775 26.11359824939441 28.401234597394158 24.94206852397766 37 19.80898140937128 28.389767748532 28.519247583600492 23.282003258496218 38 21.825474560318014 26.628411984768203 26.693868580356334 24.852244874557453 39 30.42178892397957 20.43034128208926 26.022341243866432 23.12552855006474 40 18.523977658756134 17.99291922082762 31.359920496514555 32.12318262390169 41 22.608803673213917 21.347211405692335 25.506333045069496 30.537651876024253 42 22.025905522721086 19.423408616381348 27.290622506557604 31.260063354339962 43 23.421277693634465 25.411492649272095 26.716085600026755 24.451144057066685 44 13.946316035910348 30.82050081462405 27.986039111510326 27.247144037955266 45 21.499624938485134 28.11528005389419 26.406002895379338 23.97909211224134 46 23.540007357894687 19.93965570786291 29.277492964610435 27.242843969631963 47 22.38806683261745 17.523017310163926 32.296140927572516 27.792774929646104 48 20.923654675846517 15.966870362495762 29.374483394569488 33.73499156708824 49 20.206498836592626 22.34267722253809 31.83245022670916 25.618373714160125 50 19.54619945628025 24.57178486280393 27.947577389285183 27.93443829163063 51 19.077730901724326 18.635540542477507 33.173593758211936 29.113134797586227 52 22.38973908140985 16.762621894992332 35.48798608689005 25.35965293670777 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 100.0 1 129.5 2 159.0 3 799.5 4 1440.0 5 1011.0 6 582.0 7 661.5 8 741.0 9 798.5 10 856.0 11 846.0 12 836.0 13 824.0 14 746.0 15 680.0 16 610.0 17 540.0 18 528.0 19 516.0 20 524.5 21 533.0 22 575.5 23 618.0 24 732.5 25 847.0 26 1036.0 27 1225.0 28 1805.5 29 2386.0 30 2274.5 31 2163.0 32 2527.0 33 2891.0 34 4145.0 35 5399.0 36 5567.5 37 5736.0 38 6761.5 39 8999.5 40 10212.0 41 14895.5 42 19579.0 43 27588.0 44 35597.0 45 39236.5 46 42876.0 47 43977.5 48 45079.0 49 50423.0 50 55767.0 51 56804.5 52 57842.0 53 49535.0 54 41228.0 55 32798.0 56 24368.0 57 19503.0 58 14638.0 59 12687.0 60 10736.0 61 9104.5 62 7473.0 63 6488.0 64 4740.0 65 3977.0 66 3040.5 67 2104.0 68 1724.5 69 1345.0 70 1295.5 71 1246.0 72 1039.5 73 833.0 74 753.5 75 674.0 76 513.0 77 352.0 78 285.5 79 219.0 80 136.5 81 54.0 82 35.5 83 17.0 84 23.5 85 30.0 86 16.0 87 2.0 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 418598.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.317970882027733 #Duplication Level Percentage of deduplicated Percentage of total 1 70.3021026913236 19.90812896958225 2 11.954093528590114 6.77031344927302 3 4.6971382830548185 3.990402753852122 4 2.2786243700966797 2.5810407425390625 5 1.2839613671541148 1.817959030435937 6 0.804645017588315 1.3671548507060758 7 0.5998463279261593 1.1890501593532967 8 0.4602420955309136 1.042649780794227 9 0.4010185351174132 1.022042808054749 >10 6.6870209619456515 44.58867745012307 >50 0.42301498540782967 8.12314932586526 >100 0.09898550658543213 4.644948361053373 >500 0.005922209795709616 1.1042174023156075 >1k 0.003384119883262637 1.8502649160519495 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 2784 0.6650772340049402 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCTT 1920 0.4586739544861657 Illumina Single End Adapter 2 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 1810 0.43239575917706247 Illumina Single End Adapter 2 (95% over 21bp) TGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCTTG 1209 0.2888212557155075 Illumina Single End Adapter 2 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 886 0.2116589185805952 No Hit TCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 752 0.17964729884041492 Illumina Single End Adapter 2 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 691 0.16507484507809403 No Hit CGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 604 0.14429118151543963 No Hit GCCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 588 0.14046889856138825 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 545 0.13019651312237518 No Hit AGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 543 0.12971872775311874 No Hit ACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 449 0.10726281539806688 Illumina Single End Adapter 2 (95% over 21bp) GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 444 0.10606835197492581 No Hit GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA 443 0.1058294592902976 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.467990769186666 0.0 2 0.0 0.0 0.0 1.8731575401698048 0.0 3 0.0 0.0 0.0 2.9555802942202303 0.0 4 0.0 0.0 0.0 3.621135313594427 0.0 5 0.0 0.0 0.0 7.235342739334636 0.0 6 0.0 0.0 0.0 7.94007615898786 0.0 7 0.0 0.0 0.0 11.742531020215099 0.0 8 0.0 0.0 0.0 15.37369982656391 0.0 9 0.0 0.0 0.0 19.274817366542603 0.0 10 0.0 0.0 0.0 20.691689879072523 0.0 11 0.0 0.0 0.0 22.101395611063598 0.0 12 0.0 0.0 0.0 23.389743859263543 0.0 13 0.0 0.0 0.0 23.80661159393977 0.0 14 0.0 0.0 0.0 24.161367230612665 0.0 15 0.0 0.0 0.0 25.292285199642617 0.0 16 0.0 0.0 0.0 26.532138232863034 0.0 17 0.0 0.0 0.0 28.460479983181955 0.0 18 0.0 0.0 0.0 29.088528851069523 0.0 19 0.0 0.0 0.0 30.085905809392305 0.0 20 0.0 0.0 0.0 31.116966636247664 0.0 21 0.0 0.0 0.0 31.910568134582583 0.0 22 0.0 0.0 0.0 32.937806678483895 0.0 23 0.0 0.0 0.0 33.61912861504355 0.0 24 0.0 0.0 0.0 34.15854829693405 0.0 25 0.0 0.0 0.0 34.72997959856473 0.0 26 2.3889268462821132E-4 0.0 0.0 35.24718226078481 0.0 27 2.3889268462821132E-4 0.0 0.0 35.823869201477315 0.0 28 2.3889268462821132E-4 0.0 0.0 36.26367063387785 0.0 29 2.3889268462821132E-4 0.0 0.0 36.95478717050727 0.0 30 2.3889268462821132E-4 0.0 0.0 37.6105475898117 0.0 31 2.3889268462821132E-4 0.0 0.0 38.069699329667124 0.0 32 2.3889268462821132E-4 0.0 0.0 38.574479572286535 0.0 33 2.3889268462821132E-4 0.0 0.0 39.06755407335917 0.0 34 2.3889268462821132E-4 0.0 0.0 39.83965523007755 0.0 35 2.3889268462821132E-4 0.0 0.0 40.34204654585067 0.0 36 2.3889268462821132E-4 0.0 0.0 40.822220841953374 0.0 37 2.3889268462821132E-4 0.0 0.0 41.25485549381507 0.0 38 2.3889268462821132E-4 0.0 0.0 41.63660600385095 0.0 39 2.3889268462821132E-4 0.0 0.0 42.09504106565249 0.0 40 2.3889268462821132E-4 0.0 0.0 42.552281664030886 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAA 20 6.3068315E-4 46.000004 2 GCGAGAC 70 0.0 46.000004 20 TCACGAC 20 6.3068315E-4 46.000004 24 AACCGAG 20 6.3068315E-4 46.000004 41 TGATAAC 20 6.3068315E-4 46.000004 37 TCGTTCA 20 6.3068315E-4 46.000004 15 CTCACGG 40 5.5970304E-9 46.000004 1 CTCACGA 20 6.3068315E-4 46.000004 23 GCGACTA 20 6.3068315E-4 46.000004 8 GGGCTTA 20 6.3068315E-4 46.000004 6 ACCGAGT 20 6.3068315E-4 46.000004 42 CACGACG 20 6.3068315E-4 46.000004 25 CGCGAAT 20 6.3068315E-4 46.000004 3 CGTTCAT 20 6.3068315E-4 46.000004 16 ATTCCGG 20 6.3068315E-4 46.000004 1 ATATCGG 20 6.3068315E-4 46.000004 1 TACGCGG 40 5.5970304E-9 46.000004 1 TAACCGA 20 6.3068315E-4 46.000004 40 TCGTGCG 20 6.3068315E-4 46.000004 35 GCTTAGG 70 0.0 46.000004 1 >>END_MODULE