SRR1544885_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544885_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1064178
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	3211	0.3017352360225451	Illumina Single End Adapter 1 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	2986	0.2805921565753098	No Hit
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCTT	2750	0.2584154154662096	Illumina Single End Adapter 1 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2203	0.20701424009893082	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	2104	0.19771128514214728	Illumina Single End Adapter 1 (95% over 22bp)
TGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCTTG	1583	0.14875331006654902	Illumina Single End Adapter 1 (95% over 24bp)
GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT	1364	0.12817404607123997	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1316	0.12366352245582976	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1102	0.10355410467045928	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACGG	75	0.0	46.0	1
TATCGGT	20	6.3112425E-4	46.0	8
TCGGTAC	20	6.3112425E-4	46.0	35
TACCGGT	45	3.092282E-10	46.0	40
ACGGGTA	90	0.0	43.444447	4
CGAATAT	90	0.0	43.444447	14
TACGGGA	250	0.0	43.24	3
ATAGCGG	145	0.0	42.827587	1
AACGCAA	720	0.0	42.48611	17
CTACCGG	65	0.0	42.46154	1
CGGTCTA	65	0.0	42.46154	30
CGCACTT	675	0.0	41.91111	34
CCGCACT	675	0.0	41.91111	33
CGGGATA	220	0.0	41.81818	5
AGTACGG	165	0.0	41.81818	1
TACGTGG	55	4.7293724E-11	41.81818	1
TCGGCGT	380	0.0	41.76316	4
GGACTAA	320	0.0	41.6875	7
GCGTAGG	195	0.0	41.28205	1
CAACGCA	750	0.0	41.09333	16