SRR1544884_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544884_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1182954
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	4478	0.3785438825178325	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCTT	3292	0.27828639152494516	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	3123	0.26400012172916276	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2728	0.23060913611180145	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2186	0.18479163179633357	No Hit
GGACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTG	1311	0.11082425859331808	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1285	0.10862637093242847	No Hit
GGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGAAGG	1285	0.10862637093242847	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	1207	0.10203270794975967	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1191	0.10068016169690454	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	20	6.311529E-4	46.000004	35
TACGAAC	20	6.311529E-4	46.000004	39
GCGATAT	20	6.311529E-4	46.000004	8
CTATTAG	20	6.311529E-4	46.000004	17
TAGATCG	20	6.311529E-4	46.000004	13
TTACGAA	20	6.311529E-4	46.000004	38
TAGTCCA	20	6.311529E-4	46.000004	46
CTAACGG	75	0.0	46.0	1
GCTACGA	25	3.4172175E-5	46.0	10
CGATAGA	25	3.4172175E-5	46.0	9
ATACCGG	30	1.8614501E-6	46.0	1
TACACGG	110	0.0	46.0	1
ATAACGG	70	0.0	45.999996	1
ATAGCGG	185	0.0	44.756756	1
CATGCGG	120	0.0	44.083332	1
ATTCGAA	80	0.0	43.125004	41
GTCGAAT	75	0.0	42.93333	29
TACGGGT	70	0.0	42.714283	3
ACGGGAT	205	0.0	42.634144	4
TAGTAGG	365	0.0	42.219177	1