SRR1544882_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544882_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	857191
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	2605	0.3038995976392659	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCTT	2373	0.27683445113166144	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	2188	0.255252329994132	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2033	0.23717001228431003	No Hit
GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT	1400	0.16332415995968227	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1012	0.1180600356279989	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	955	0.11141040911535469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	70	0.0	46.000004	3
GTAATCG	35	1.0191616E-7	46.000004	32
CGACGCC	20	6.310552E-4	46.0	35
TATGCAT	20	6.310552E-4	46.0	26
TAGTTCG	25	3.4164237E-5	46.0	27
CTAACGG	50	1.6370905E-11	46.0	1
ACTACGG	45	3.092282E-10	46.0	1
GCGATCT	25	3.4164237E-5	46.0	8
ACGTAGG	75	0.0	46.0	1
AATACGG	30	1.8608443E-6	46.0	1
GTAACGC	30	1.8608443E-6	46.0	33
CGCACTT	365	0.0	44.739723	34
GGCGATA	100	0.0	43.7	7
GACTAAT	285	0.0	43.57895	8
CCGCACT	375	0.0	43.546665	33
ATCAACG	435	0.0	43.35632	14
GCTACGA	165	0.0	43.21212	10
TACGGGA	80	0.0	43.125	3
CTACGAA	155	0.0	43.032257	11
AGTACGG	75	0.0	42.93333	1