##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544882_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 857191 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91993266378205 34.0 33.0 34.0 31.0 34.0 2 33.254901183050215 34.0 33.0 34.0 31.0 34.0 3 33.329172844791884 34.0 34.0 34.0 31.0 34.0 4 36.59613318385284 37.0 37.0 37.0 35.0 37.0 5 36.59178409479334 37.0 37.0 37.0 35.0 37.0 6 36.66838662561786 37.0 37.0 37.0 35.0 37.0 7 36.494922368526964 37.0 37.0 37.0 35.0 37.0 8 36.53540109497183 37.0 37.0 37.0 35.0 37.0 9 38.32912501414504 39.0 39.0 39.0 37.0 39.0 10 38.15177947505282 39.0 39.0 39.0 35.0 39.0 11 37.56178611301332 39.0 35.0 39.0 35.0 39.0 12 37.49188453915172 39.0 35.0 39.0 35.0 39.0 13 37.479397240521656 39.0 35.0 39.0 35.0 39.0 14 38.81278851504507 41.0 36.0 41.0 35.0 41.0 15 38.87339461100268 41.0 36.0 41.0 35.0 41.0 16 38.87171003895281 41.0 36.0 41.0 35.0 41.0 17 38.923407968585764 41.0 36.0 41.0 35.0 41.0 18 38.90187484469622 41.0 36.0 41.0 35.0 41.0 19 38.837935769274296 41.0 36.0 41.0 35.0 41.0 20 38.76274599243342 41.0 35.0 41.0 35.0 41.0 21 38.712991620303995 41.0 35.0 41.0 35.0 41.0 22 38.67519257668361 41.0 35.0 41.0 35.0 41.0 23 38.65919964162013 41.0 35.0 41.0 35.0 41.0 24 38.59308018866274 41.0 35.0 41.0 35.0 41.0 25 38.54706477319524 41.0 35.0 41.0 35.0 41.0 26 38.485598892195554 40.0 35.0 41.0 35.0 41.0 27 38.4456684682877 40.0 35.0 41.0 35.0 41.0 28 38.457502470277916 40.0 36.0 41.0 35.0 41.0 29 38.47459084381427 40.0 36.0 41.0 35.0 41.0 30 38.405746210587836 40.0 35.0 41.0 35.0 41.0 31 38.334335054847756 40.0 35.0 41.0 35.0 41.0 32 38.25727054997078 40.0 35.0 41.0 35.0 41.0 33 38.17861596773648 40.0 35.0 41.0 35.0 41.0 34 38.06245165896515 40.0 35.0 41.0 35.0 41.0 35 37.99415416167459 40.0 35.0 41.0 35.0 41.0 36 37.915378252921464 40.0 35.0 41.0 35.0 41.0 37 37.85401736602461 40.0 35.0 41.0 35.0 41.0 38 37.79043060414774 40.0 35.0 41.0 35.0 41.0 39 37.659900768906816 40.0 35.0 41.0 35.0 41.0 40 37.57131257794354 40.0 35.0 41.0 35.0 41.0 41 37.523025790051456 40.0 35.0 41.0 35.0 41.0 42 37.45527309549447 39.0 35.0 41.0 35.0 41.0 43 37.364782178067664 39.0 35.0 41.0 34.0 41.0 44 37.300126809544196 39.0 35.0 41.0 34.0 41.0 45 37.26043787207285 39.0 35.0 41.0 34.0 41.0 46 37.27941497285902 39.0 35.0 41.0 34.0 41.0 47 37.21871554881001 39.0 35.0 41.0 34.0 41.0 48 37.18289389412628 39.0 35.0 41.0 34.0 41.0 49 37.1069283275256 39.0 35.0 41.0 34.0 41.0 50 37.02956283955385 38.0 35.0 41.0 34.0 41.0 51 36.95322396058755 38.0 35.0 41.0 34.0 41.0 52 36.75442929288805 37.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 6.0 13 5.0 14 8.0 15 6.0 16 22.0 17 39.0 18 67.0 19 113.0 20 217.0 21 355.0 22 547.0 23 919.0 24 1749.0 25 2644.0 26 3682.0 27 4428.0 28 4611.0 29 4904.0 30 5572.0 31 6681.0 32 8747.0 33 12398.0 34 40509.0 35 158432.0 36 34274.0 37 52287.0 38 90227.0 39 419641.0 40 4100.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.37634202878939 22.346128225797983 23.800063229781927 20.477466515630706 2 26.79892812687021 24.08739709119671 26.395400791655536 22.718273990277545 3 27.522687475720115 24.502590437837075 25.362142159682033 22.61257992676078 4 26.78201241030295 27.20957172905455 22.12424068848133 23.88417517216116 5 24.47669189247204 35.78525672808044 20.27541119773773 19.462640181709794 6 87.6370610517376 3.2521340051400447 6.736071657308582 2.37473328581378 7 87.4253229443613 2.7709110338302665 5.281903333096125 4.521862688712317 8 77.12376821501859 5.575886821023553 10.562406744821166 6.7379382191366926 9 50.105402413231126 19.37957818035887 15.26975901520198 15.245260391208026 10 39.10458695903247 22.52135171741187 23.08003700458824 15.294024318967416 11 37.90858746767057 17.271413255622143 25.351176108941882 19.46882316776541 12 22.075243440493423 30.344345659252138 28.14705240722313 19.433358493031307 13 16.259853404900422 32.119212637556856 29.34410183961334 22.276832117929377 14 14.886297219639497 24.10291288639288 40.872337670367514 20.13845222360011 15 17.865563217532614 18.183578688996967 42.588174630858234 21.362683462612182 16 17.633992890732635 22.09554230037413 28.05360765570334 32.2168571531899 17 20.538713075615586 22.945761213078534 32.269237544491254 24.24628816681463 18 23.911706959125794 27.62604833695174 25.96107518627704 22.501169517645426 19 26.947436452319263 23.050871976024013 25.98184068661477 24.019850885041958 20 22.596014190536298 28.85401269962004 26.474846329464498 22.07512678037917 21 21.935017983156612 23.986602752478735 25.263214382792164 28.815164881572485 22 20.233063576262467 28.380139315508444 23.46781522437823 27.918981883850858 23 20.38647162651031 21.719780072352606 35.2194551739344 22.674293127202688 24 20.225247348607255 22.276948778043636 31.74123386736445 25.756570005984663 25 18.368251649865666 28.866611991959783 28.398688273675294 24.366448084499254 26 19.42239244229116 28.207599006522464 27.42060987574531 24.949398675441063 27 20.028208415627322 27.317249014513685 33.035461174930674 19.619081394928315 28 18.903254933847883 25.24594868588214 29.756262023283025 26.094534356986948 29 20.634374369306258 29.08733292813387 27.152058292725894 23.12623440983398 30 25.50563410021804 25.205117645892223 25.246298666224913 24.04294958766483 31 26.227176906897064 26.851775158628588 25.263214382792164 21.65783355168218 32 23.247210948318404 29.937901821181047 24.56407031805047 22.250816912450084 33 21.28370456526025 26.69440066449601 27.713660082758686 24.308234687485054 34 19.94654633564748 27.618932069982073 29.68801585644273 22.74650573792772 35 26.98336776751039 25.61494462727677 24.549604463882613 22.85208314133023 36 24.75387632394647 30.13400747324692 25.144454386478625 19.967661816327983 37 22.230051412112353 28.97615583924703 25.481602116681113 23.312190631959506 38 22.416474274694906 27.613099064269225 24.323750482681223 25.64667617835465 39 26.82156018903605 23.40656866439335 25.75470344415655 24.017167702414046 40 19.171806516867303 22.969793196615456 30.082793683088134 27.77560660342911 41 21.789192840335467 25.950925756336684 25.09289061597707 27.166990787350777 42 22.812185382254363 22.7056746979378 28.267095664793494 26.21504425501434 43 23.464665401293296 27.001333425105955 27.029681832870388 22.504319340730362 44 19.222320346340545 29.953417616377216 26.2159775359284 24.608284501353843 45 22.96827661513012 27.287734005606683 26.012172316321568 23.731817062941634 46 23.27602599653986 24.815472864274124 27.299516677146634 24.60898446203938 47 22.88521461377919 21.419030297798276 30.74378989046782 24.951965197954713 48 22.62051281453025 21.019002766011308 28.150902190993605 28.209582228464836 49 21.06846665445624 25.030710775078134 29.816808622582364 24.08401394788326 50 20.57021130646495 25.40810624469926 27.519887632977948 26.501794815857842 51 20.488549226485112 22.825134654936882 29.91585305958649 26.770463058991524 52 23.042589107911773 20.461834060320278 31.26374401971089 25.231832812057053 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 121.0 1 351.0 2 581.0 3 2226.5 4 3872.0 5 2640.0 6 1408.0 7 1386.0 8 1364.0 9 1444.0 10 1524.0 11 1439.0 12 1354.0 13 1341.5 14 1217.5 15 1106.0 16 1054.5 17 1003.0 18 1146.0 19 1289.0 20 1328.5 21 1368.0 22 1365.5 23 1363.0 24 1752.0 25 2141.0 26 2508.0 27 2875.0 28 5139.5 29 7404.0 30 7924.5 31 8445.0 32 9161.5 33 9878.0 34 11241.5 35 12605.0 36 13766.5 37 14928.0 38 17241.5 39 23145.5 40 26736.0 41 35837.0 42 44938.0 43 60533.5 44 76129.0 45 88568.5 46 101008.0 47 100552.0 48 100096.0 49 88425.0 50 76754.0 51 67540.0 52 58326.0 53 51910.0 54 45494.0 55 42336.5 56 39179.0 57 36309.0 58 33439.0 59 33892.5 60 34346.0 61 35093.0 62 35840.0 63 32527.0 64 24640.5 65 20067.0 66 16005.5 67 11944.0 68 9947.0 69 7950.0 70 7101.5 71 6253.0 72 5768.0 73 5283.0 74 4465.5 75 3648.0 76 3149.0 77 2650.0 78 1982.0 79 1314.0 80 962.0 81 610.0 82 476.5 83 343.0 84 209.5 85 76.0 86 46.5 87 17.0 88 17.0 89 11.0 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 857191.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.173236639162294 #Duplication Level Percentage of deduplicated Percentage of total 1 71.07197034742751 17.891115279673183 2 11.23180815535464 5.654819291608306 3 4.066307018189347 3.070863264491005 4 1.9616555319446192 1.9752487564065473 5 1.1419955262293462 1.4373861811318 6 0.768391001533993 1.1605733107810874 7 0.5556501803684073 0.9791259435304989 8 0.46651807987500604 0.9395016016912915 9 0.39460548108494997 0.8940147439015734 >10 7.637384881037688 49.48430303018468 >50 0.5848808602779579 9.422706648866008 >100 0.11001330465759364 4.711937583645291 >500 0.006034485065606401 1.0216365016816482 >1k 0.002785146953356801 1.3567678624071389 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT 2605 0.3038995976392659 No Hit CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCTT 2373 0.27683445113166144 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT 2188 0.255252329994132 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2033 0.23717001228431003 No Hit GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT 1400 0.16332415995968227 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 1012 0.1180600356279989 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 955 0.11141040911535469 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2869838810720131 0.0 2 0.0 0.0 0.0 1.0268423256893737 0.0 3 0.0 0.0 0.0 1.6316083579972258 0.0 4 0.0 0.0 0.0 2.029419347613309 0.0 5 0.0 0.0 0.0 4.2442116167808575 0.0 6 0.0 0.0 0.0 4.676204019874217 0.0 7 0.0 0.0 0.0 6.734321755594728 0.0 8 0.0 0.0 0.0 8.919365695626762 0.0 9 0.0 0.0 0.0 10.99276590631493 0.0 10 0.0 0.0 0.0 11.91344752803051 0.0 11 0.0 0.0 0.0 12.812080388151532 0.0 12 0.0 0.0 0.0 13.55088889174058 0.0 13 0.0 0.0 0.0 13.858288292807554 0.0 14 0.0 0.0 0.0 14.086242156065568 0.0 15 0.0 0.0 0.0 14.853399067419046 0.0 16 0.0 0.0 0.0 15.695101791782696 0.0 17 0.0 0.0 0.0 16.78587386008486 0.0 18 0.0 0.0 0.0 17.320877144067076 0.0 19 0.0 0.0 0.0 17.973823803563032 0.0 20 0.0 0.0 0.0 18.725114939377573 0.0 21 0.0 0.0 0.0 19.415392835435743 0.0 22 0.0 0.0 0.0 20.13716896234328 0.0 23 0.0 0.0 0.0 20.673455507582325 0.0 24 1.166601142569159E-4 0.0 0.0 21.164244608261168 0.0 25 1.166601142569159E-4 0.0 0.0 21.605336500266567 0.0 26 1.166601142569159E-4 0.0 0.0 22.025662891934235 0.0 27 1.166601142569159E-4 0.0 0.0 22.444589362230822 0.0 28 1.166601142569159E-4 0.0 0.0 22.87168204052539 0.0 29 1.166601142569159E-4 0.0 0.0 23.41333495102025 0.0 30 1.166601142569159E-4 0.0 0.0 23.921973049180405 0.0 31 1.166601142569159E-4 0.0 0.0 24.389896767464894 0.0 32 1.166601142569159E-4 0.0 0.0 24.84440457260984 0.0 33 1.166601142569159E-4 0.0 0.0 25.266364205877103 0.0 34 1.166601142569159E-4 0.0 0.0 25.79833432688864 0.0 35 1.166601142569159E-4 0.0 0.0 26.23184331146734 0.0 36 1.166601142569159E-4 0.0 0.0 26.70501673489339 0.0 37 1.166601142569159E-4 0.0 0.0 27.16640748677949 0.0 38 1.166601142569159E-4 0.0 0.0 27.603999575357186 0.0 39 2.333202285138318E-4 0.0 0.0 28.089188990551698 0.0 40 2.333202285138318E-4 0.0 0.0 28.597243788140567 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGGT 70 0.0 46.000004 3 GTAATCG 35 1.0191616E-7 46.000004 32 CGACGCC 20 6.310552E-4 46.0 35 TATGCAT 20 6.310552E-4 46.0 26 TAGTTCG 25 3.4164237E-5 46.0 27 CTAACGG 50 1.6370905E-11 46.0 1 ACTACGG 45 3.092282E-10 46.0 1 GCGATCT 25 3.4164237E-5 46.0 8 ACGTAGG 75 0.0 46.0 1 AATACGG 30 1.8608443E-6 46.0 1 GTAACGC 30 1.8608443E-6 46.0 33 CGCACTT 365 0.0 44.739723 34 GGCGATA 100 0.0 43.7 7 GACTAAT 285 0.0 43.57895 8 CCGCACT 375 0.0 43.546665 33 ATCAACG 435 0.0 43.35632 14 GCTACGA 165 0.0 43.21212 10 TACGGGA 80 0.0 43.125 3 CTACGAA 155 0.0 43.032257 11 AGTACGG 75 0.0 42.93333 1 >>END_MODULE