SRR1544874_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544874_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1875006
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	7693	0.41029202039886803	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCTT	6718	0.3582921867983356	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	5121	0.27311912601879673	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3669	0.19567937382600373	No Hit
ACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	2423	0.12922625314265662	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2389	0.12741292561197137	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	2218	0.11829295479587798	No Hit
TCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	2154	0.11487963238517637	No Hit
GCCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1893	0.10095967692903382	No Hit

$Adapter graph$

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCGTA	20	6.31248E-4	46.0	31
CTAGCGG	455	0.0	43.472527	1
CATGCGG	250	0.0	42.32	1
CGTTTTT	2820	0.0	41.921986	1
TGGGCGA	655	0.0	41.786263	5
TACGGGA	435	0.0	41.77012	3
ATACCGG	100	0.0	41.399998	1
CGGGTAT	370	0.0	41.027027	5
ATAGCGG	350	0.0	40.74286	1
CTTGCGG	645	0.0	40.651165	1
AATGCGG	340	0.0	40.588234	1
ATGGGCG	340	0.0	39.911766	4
GGGCGAT	3065	0.0	39.771614	6
AGGGCGA	1415	0.0	39.660778	5
GGACTAA	1290	0.0	39.581398	7
CACATCG	35	5.37493E-6	39.42857	35
CTTACGG	280	0.0	39.42857	1
GTCGAGG	235	0.0	39.148937	1
AATACGG	100	0.0	39.1	1
CGTAGGG	830	0.0	39.072292	2