##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544838_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 456590 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.87275235988523 34.0 31.0 34.0 31.0 34.0 2 33.17362841936968 34.0 33.0 34.0 31.0 34.0 3 33.21277732758054 34.0 33.0 34.0 31.0 34.0 4 36.532994590332684 37.0 37.0 37.0 35.0 37.0 5 36.52162771852209 37.0 37.0 37.0 35.0 37.0 6 36.66124093825971 37.0 37.0 37.0 35.0 37.0 7 36.63212072099696 37.0 37.0 37.0 35.0 37.0 8 36.53927593683611 37.0 37.0 37.0 35.0 37.0 9 38.30886572198252 39.0 39.0 39.0 37.0 39.0 10 38.10255371339714 39.0 39.0 39.0 35.0 39.0 11 37.409157011761096 39.0 35.0 39.0 35.0 39.0 12 37.34442059615848 39.0 35.0 39.0 35.0 39.0 13 37.341792417705165 39.0 35.0 39.0 35.0 39.0 14 38.65513042335574 41.0 35.0 41.0 35.0 41.0 15 38.70018178234302 41.0 35.0 41.0 35.0 41.0 16 38.70121553253466 41.0 35.0 41.0 35.0 41.0 17 38.761856370047525 41.0 36.0 41.0 35.0 41.0 18 38.742066186294046 41.0 36.0 41.0 35.0 41.0 19 38.65027924396067 41.0 35.0 41.0 35.0 41.0 20 38.55702271184214 41.0 35.0 41.0 35.0 41.0 21 38.48947195514575 40.0 35.0 41.0 35.0 41.0 22 38.47306993144834 40.0 35.0 41.0 35.0 41.0 23 38.430642370616965 40.0 35.0 41.0 35.0 41.0 24 38.38331544711886 40.0 35.0 41.0 35.0 41.0 25 38.358336801068795 40.0 35.0 41.0 35.0 41.0 26 38.28756214546968 40.0 35.0 41.0 35.0 41.0 27 38.263897588646266 40.0 35.0 41.0 35.0 41.0 28 38.295475152762876 40.0 35.0 41.0 35.0 41.0 29 38.311717295604375 40.0 36.0 41.0 35.0 41.0 30 38.17700562868219 40.0 35.0 41.0 35.0 41.0 31 38.136790118049014 40.0 35.0 41.0 35.0 41.0 32 38.03149214831687 40.0 35.0 41.0 35.0 41.0 33 37.959217240850656 40.0 35.0 41.0 35.0 41.0 34 37.80496944742548 40.0 35.0 41.0 35.0 41.0 35 37.796281127488555 40.0 35.0 41.0 35.0 41.0 36 37.74877023149872 40.0 35.0 41.0 35.0 41.0 37 37.667741299634244 40.0 35.0 41.0 34.0 41.0 38 37.63542127510458 40.0 35.0 41.0 35.0 41.0 39 37.58249195120349 40.0 35.0 41.0 34.0 41.0 40 37.50955780897523 40.0 35.0 41.0 34.0 41.0 41 37.457760791957774 40.0 35.0 41.0 34.0 41.0 42 37.368166188484196 39.0 35.0 41.0 34.0 41.0 43 37.399686808734316 39.0 35.0 41.0 34.0 41.0 44 37.360673689743535 39.0 35.0 41.0 34.0 41.0 45 37.335524212094 39.0 35.0 41.0 34.0 41.0 46 37.29168619549267 39.0 35.0 41.0 34.0 41.0 47 37.21542083707484 39.0 35.0 41.0 34.0 41.0 48 37.222714032282795 39.0 35.0 41.0 34.0 41.0 49 37.16265139402965 39.0 35.0 41.0 34.0 41.0 50 37.07075275411201 39.0 35.0 41.0 34.0 41.0 51 37.00592435226352 39.0 35.0 41.0 34.0 41.0 52 36.76214546967739 38.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 2.0 16 3.0 17 14.0 18 30.0 19 55.0 20 121.0 21 187.0 22 337.0 23 572.0 24 998.0 25 1689.0 26 2334.0 27 2677.0 28 2722.0 29 3070.0 30 3490.0 31 4281.0 32 5366.0 33 7555.0 34 20947.0 35 91657.0 36 16505.0 37 22911.0 38 42324.0 39 224763.0 40 1979.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.919665345276943 22.735714755031864 26.41319345583565 18.931426443855536 2 25.8706936200968 24.6461814757222 27.109660745964653 22.373464158216343 3 25.180577761229987 25.34549595917563 26.826255502748637 22.64767077684575 4 25.482161238748112 27.547690488184145 24.583105192842595 22.387043080225148 5 23.380494535578965 35.1875862371055 21.4783503799908 19.953568847324735 6 85.99706520072714 2.398431853522854 8.529972185111369 3.0745307606386474 7 86.9559123064456 2.222781926892836 5.815063842834928 5.006241923826628 8 76.7130248143849 4.375698109901662 11.979894434832126 6.931382640881316 9 48.81337742832738 20.831380450732603 14.905714097987252 15.449528022952757 10 39.95838717448915 20.44372412886835 26.69528460982501 12.902604086817496 11 36.57767362403907 18.612321776648635 27.096519853698066 17.713484745614227 12 19.815808493396702 34.233338443680324 29.248340962351342 16.702512100571628 13 13.5946910795243 36.858012659059554 30.088701022799448 19.458595238616702 14 12.630587616899188 24.598655248691387 43.96614030092643 18.804616833482992 15 14.058126546792526 18.974572373464156 46.34639392014718 20.620907159596136 16 15.20488841192317 22.69913927155654 27.353424297509797 34.742548019010485 17 18.47499945246282 23.37655226789899 33.50949429466261 24.638953984975583 18 23.79552771633194 26.967739109485535 28.055147944545432 21.181585229637093 19 25.88383451236339 23.0802251472875 26.302590945925232 24.733349394423882 20 18.5306292297247 31.028712849602485 28.020981624652315 22.419676296020498 21 19.986640092862306 24.389934076523794 27.426794279331567 28.19663155128233 22 16.833921023237476 30.15747169232791 24.72721697803281 28.281390306401804 23 17.03913795746731 23.73376552267899 38.096760770056285 21.13033574979741 24 18.489673448827176 22.911145666790773 34.80606233163232 23.793118552749732 25 15.868503471385706 32.54845704023303 28.516831292844785 23.06620819553648 26 18.196631551282334 28.647364156026196 28.542018003022406 24.613986289669068 27 19.73083072340612 25.112464136314856 36.44516962701768 18.711535513261353 28 14.964191068573557 23.527234499222498 34.062068814472504 27.446505617731443 29 21.003964169167087 26.363039050351517 29.13664337808537 23.49635340239602 30 26.009111018638166 23.6665279572483 27.302393832541227 23.02196719157231 31 27.25924790293261 24.55069099191835 24.646838520335532 23.54322258481351 32 23.17637267570468 25.786591909590662 30.021682472239863 21.015352942464794 33 20.178935149696663 23.70616964891916 30.25296217613176 25.861933025252416 34 17.14273199150222 22.0556735802361 35.709279660088924 25.09231476817276 35 26.451959088022075 23.226965110931033 28.93755886024661 21.38351694080028 36 21.71598151514488 24.35029238485293 33.37282901509012 20.560897084912067 37 19.40734575877702 27.804156902253663 31.314089226658492 21.474408112310826 38 17.735386232725205 27.56783985632624 30.447228366806105 24.24954554414245 39 25.153200902341272 23.485183643969425 29.509625703585275 21.851989750104032 40 17.25661972447929 20.703694780875622 34.118136621476594 27.92154887316849 41 21.47944545434635 24.654285025953264 26.350117172956043 27.516152346744345 42 21.25013688429444 22.029391795702928 30.83554173328369 25.884929586718936 43 23.493068179329377 24.837162443329902 29.047066295801482 22.622703081539235 44 18.2879607525351 28.381042072756742 28.247223986508686 25.083773188199476 45 22.065310234564926 25.40397292976193 28.501719266738213 24.028997568934933 46 23.057666615563196 21.908714601721456 30.40495849668192 24.628660286033423 47 20.17170765895004 20.19141899734992 35.46332595983267 24.173547383867362 48 19.362885739941742 18.318841849361572 32.52830767209093 29.78996473860575 49 20.41021485358856 23.08175825138527 33.157099367047024 23.350927527979152 50 19.392014717799338 24.685385137650847 30.50526730765019 25.417332836899625 51 19.930572285858208 20.210254276265356 31.868853895179484 27.99031954269695 52 21.09595041503318 19.45333888171007 36.12847412339298 23.322236579863773 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 69.0 1 105.5 2 142.0 3 826.5 4 1511.0 5 1045.5 6 580.0 7 656.5 8 733.0 9 763.0 10 793.0 11 824.5 12 856.0 13 795.5 14 729.0 15 723.0 16 690.5 17 658.0 18 649.5 19 641.0 20 737.5 21 834.0 22 863.0 23 892.0 24 1117.0 25 1342.0 26 1537.0 27 1732.0 28 2200.5 29 2669.0 30 3076.0 31 3483.0 32 3948.0 33 4413.0 34 5446.0 35 6479.0 36 7360.0 37 8241.0 38 9287.5 39 12567.5 40 14801.0 41 21791.5 42 28782.0 43 39791.0 44 50800.0 45 60002.5 46 69205.0 47 68564.0 48 67923.0 49 58596.0 50 49269.0 51 41825.5 52 34382.0 53 29387.0 54 24392.0 55 21007.5 56 17623.0 57 15619.0 58 13615.0 59 12378.0 60 11141.0 61 10232.5 62 9324.0 63 7762.5 64 5170.0 65 4139.0 66 3544.5 67 2950.0 68 2172.5 69 1395.0 70 1158.5 71 922.0 72 824.5 73 727.0 74 671.5 75 616.0 76 473.0 77 330.0 78 221.5 79 113.0 80 81.5 81 50.0 82 36.0 83 22.0 84 14.0 85 6.0 86 3.5 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 456590.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.75746714410478 #Duplication Level Percentage of deduplicated Percentage of total 1 70.827927398321 23.201435046355385 2 12.27904688182414 8.044609495845531 3 4.296418521618742 4.222193656777475 4 1.9245384763955178 2.5217202363236657 5 1.1572441749861089 1.8954194019907051 6 0.8279878688586843 1.6273671245913415 7 0.6554380986777005 1.5029344387700494 8 0.5747926708491505 1.5063001624010626 9 0.46474315004389444 1.3701427621209565 >10 6.717835692417147 43.44278104563601 >50 0.20852791364505793 4.506825983040072 >100 0.05747884799190699 3.159923216576019 >500 0.006015228278222824 1.3790865614364543 >1k 0.002005076092740942 1.619260868135262 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 2835 0.6209071595961365 No Hit CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCTT 2675 0.5858647802185768 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 1886 0.41306204691298537 No Hit TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 929 0.20346481526095622 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 873 0.19119998247881032 No Hit ACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 784 0.1717076589500427 No Hit CGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 759 0.166232287172299 No Hit GCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 723 0.15834775181234806 No Hit AGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 609 0.13338005650583676 No Hit ACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 561 0.12286734269256881 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG 531 0.11629689655927639 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 530 0.11607788168816664 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6001007468407105 0.0 2 0.0 0.0 0.0 1.9932543419698197 0.0 3 0.0 0.0 0.0 3.151185965527059 0.0 4 0.0 0.0 0.0 3.836045467487242 0.0 5 0.0 0.0 0.0 7.268884557261438 0.0 6 0.0 0.0 0.0 7.819925972973565 0.0 7 0.0 0.0 0.0 10.083006636150595 0.0 8 0.0 0.0 0.0 12.71556538688977 0.0 9 0.0 0.0 0.0 14.753936792308197 0.0 10 0.0 0.0 0.0 16.08510917891325 0.0 11 0.0 0.0 0.0 17.403578702993933 0.0 12 0.0 0.0 0.0 18.528877110755822 0.0 13 0.0 0.0 0.0 18.93821590485994 0.0 14 0.0 0.0 0.0 19.28513546069778 0.0 15 0.0 0.0 0.0 20.426859983792898 0.0 16 0.0 0.0 0.0 21.75584222168685 0.0 17 0.0 0.0 0.0 23.57782693444885 0.0 18 0.0 0.0 0.0 24.35883396482621 0.0 19 0.0 0.0 0.0 25.25591887689174 0.0 20 0.0 0.0 0.0 26.3558115596049 0.0 21 0.0 0.0 0.0 27.31860093300335 0.0 22 0.0 0.0 0.0 28.421997853654265 0.0 23 0.0 0.0 0.0 29.175628025142906 0.0 24 0.0 0.0 0.0 29.823035984143324 0.0 25 0.0 0.0 0.0 30.49694474254802 0.0 26 0.0 0.0 0.0 31.086313760704353 0.0 27 0.0 0.0 0.0 31.710068113624914 0.0 28 0.0 0.0 0.0 32.32484285682998 0.0 29 0.0 0.0 0.0 33.1588514860159 0.0 30 0.0 0.0 0.0 33.89955978010907 0.0 31 0.0 0.0 0.0 34.505135898727524 0.0 32 0.0 0.0 0.0 35.07588865283953 0.0 33 0.0 0.0 0.0 35.65124071924484 0.0 34 0.0 0.0 0.0 36.505398716572856 0.0 35 0.0 0.0 0.0 37.05424998357388 0.0 36 0.0 0.0 0.0 37.63332530278806 0.0 37 0.0 0.0 0.0 38.166188484198074 0.0 38 0.0 0.0 0.0 38.69226220460369 0.0 39 0.0 0.0 0.0 39.3057228585821 0.0 40 0.0 0.0 0.0 39.89640596596509 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGCG 75 0.0 46.000004 4 GGTATGC 75 0.0 46.000004 7 CTTCGGG 25 3.413898E-5 46.0 2 CGGGTCA 20 6.3074374E-4 46.0 5 TCCGCGG 20 6.3074374E-4 46.0 1 ACGCCAA 20 6.3074374E-4 46.0 43 GTATTAC 20 6.3074374E-4 46.0 8 ATTACGG 20 6.3074374E-4 46.0 1 TAGCGCC 20 6.3074374E-4 46.0 20 ACCGAGG 40 5.5988494E-9 46.0 1 GGATCGT 20 6.3074374E-4 46.0 8 CGATTGA 25 3.413898E-5 46.0 9 AGACCGG 30 1.8589217E-6 46.0 1 ACTACGG 50 1.6370905E-11 46.0 1 TCGTCCC 30 1.8589217E-6 46.0 37 CGAATAT 20 6.3074374E-4 46.0 14 ACTCGTA 25 3.413898E-5 46.0 15 AATTCGC 30 1.8589217E-6 46.0 12 AGTTCGG 20 6.3074374E-4 46.0 1 CGTACAC 25 3.413898E-5 46.0 18 >>END_MODULE