SRR1544834_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544834_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	715521
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	2129	0.2975454249421051	Illumina Single End Adapter 1 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCTT	1610	0.22501086620797991	Illumina Single End Adapter 1 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	1457	0.20362784600312223	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1022	0.14283298463636987	No Hit
ACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	723	0.10104525234060216	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	35	1.01885234E-7	46.000004	11
AATCCTC	20	6.3098484E-4	46.000004	35
CGCGGAT	20	6.3098484E-4	46.000004	36
TTAGCCG	20	6.3098484E-4	46.000004	26
TTCACGG	75	0.0	46.000004	1
ATTCGTC	20	6.3098484E-4	46.000004	33
ATTCGAT	20	6.3098484E-4	46.000004	13
AATGGGT	35	1.01885234E-7	46.000004	3
CGCGACG	20	6.3098484E-4	46.000004	25
CTAACGG	70	0.0	46.000004	1
ATATCCG	20	6.3098484E-4	46.000004	15
CAGATAG	35	1.01885234E-7	46.000004	22
TTGACGT	20	6.3098484E-4	46.000004	46
AACGCTC	20	6.3098484E-4	46.000004	21
ACGCTCG	20	6.3098484E-4	46.000004	22
CGTCGCA	20	6.3098484E-4	46.000004	37
CACGTCA	20	6.3098484E-4	46.000004	34
CACAACG	40	5.6061253E-9	46.000004	11
ATTGACG	20	6.3098484E-4	46.000004	45
CGTTTAG	40	5.6061253E-9	46.000004	29