##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544833_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 521682 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.938061884443016 34.0 33.0 34.0 31.0 34.0 2 33.293981774337624 34.0 34.0 34.0 31.0 34.0 3 33.38178430538144 34.0 34.0 34.0 31.0 34.0 4 36.6043585939327 37.0 37.0 37.0 35.0 37.0 5 36.58983250332578 37.0 37.0 37.0 35.0 37.0 6 36.5493729896757 37.0 37.0 37.0 35.0 37.0 7 36.46830252912694 37.0 37.0 37.0 35.0 37.0 8 36.497310622179796 37.0 37.0 37.0 35.0 37.0 9 38.3251195172538 39.0 39.0 39.0 37.0 39.0 10 38.12121368956567 39.0 39.0 39.0 35.0 39.0 11 37.163653336707036 39.0 35.0 39.0 35.0 39.0 12 37.076565800621836 39.0 35.0 39.0 35.0 39.0 13 37.070613898888595 39.0 35.0 39.0 35.0 39.0 14 38.20247008714121 40.0 35.0 41.0 35.0 41.0 15 38.275422575438675 40.0 35.0 41.0 35.0 41.0 16 38.28500504138537 40.0 35.0 41.0 35.0 41.0 17 38.38918728267412 40.0 36.0 41.0 35.0 41.0 18 38.39998696523936 40.0 36.0 41.0 35.0 41.0 19 38.28320126053803 40.0 35.0 41.0 35.0 41.0 20 38.20458823574515 40.0 35.0 41.0 35.0 41.0 21 38.151743782610865 40.0 35.0 41.0 35.0 41.0 22 38.137723747417006 40.0 35.0 41.0 35.0 41.0 23 38.10729716570631 40.0 35.0 41.0 35.0 41.0 24 38.0447801534268 40.0 35.0 41.0 35.0 41.0 25 37.99705759447326 40.0 35.0 41.0 35.0 41.0 26 37.937946871849135 40.0 35.0 41.0 35.0 41.0 27 37.95736483144904 40.0 35.0 41.0 35.0 41.0 28 38.0082042316967 40.0 35.0 41.0 35.0 41.0 29 38.06041611556466 40.0 35.0 41.0 35.0 41.0 30 37.975835854026016 40.0 35.0 41.0 35.0 41.0 31 37.92919824720807 40.0 35.0 41.0 35.0 41.0 32 37.87855245149344 40.0 35.0 41.0 35.0 41.0 33 37.8288938472096 40.0 35.0 41.0 35.0 41.0 34 37.75153062593687 40.0 35.0 41.0 35.0 41.0 35 37.65711487074501 39.0 35.0 41.0 35.0 41.0 36 37.6214724679019 39.0 35.0 41.0 35.0 41.0 37 37.56389716340606 39.0 35.0 41.0 35.0 41.0 38 37.527564684999675 39.0 35.0 41.0 35.0 41.0 39 37.47336116638105 39.0 35.0 41.0 35.0 41.0 40 37.437810773613045 39.0 35.0 41.0 35.0 41.0 41 37.41230481404381 39.0 35.0 41.0 35.0 41.0 42 37.33999064564237 38.0 35.0 41.0 35.0 41.0 43 37.26852565355907 38.0 35.0 41.0 35.0 41.0 44 37.135764699567936 38.0 35.0 41.0 35.0 41.0 45 37.12029358881464 38.0 35.0 41.0 35.0 41.0 46 37.0771101935662 37.0 35.0 41.0 35.0 41.0 47 37.0265219041485 37.0 35.0 41.0 35.0 41.0 48 37.00762725185074 37.0 35.0 41.0 35.0 41.0 49 36.940289295011134 37.0 35.0 41.0 35.0 41.0 50 36.86738472862778 37.0 35.0 41.0 34.0 41.0 51 36.80647405890945 36.0 35.0 41.0 34.0 41.0 52 36.386386726013164 36.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 4.0 14 3.0 15 8.0 16 10.0 17 21.0 18 39.0 19 77.0 20 126.0 21 189.0 22 299.0 23 502.0 24 827.0 25 1350.0 26 1923.0 27 2248.0 28 2202.0 29 2420.0 30 2957.0 31 3574.0 32 5002.0 33 7628.0 34 27715.0 35 144160.0 36 17287.0 37 27756.0 38 47584.0 39 223513.0 40 2255.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.30125248714734 22.305734144555494 24.4507190203994 21.94229434789776 2 25.042267128250543 24.583558566329682 27.078565102878766 23.295609202541012 3 26.32829961547456 25.14807871461925 25.767038157344896 22.756583512561292 4 26.541264601807228 26.883235380940878 23.657898873259956 22.917601143991934 5 23.95750668031483 34.20263685540233 21.446973443592075 20.392883020690768 6 87.39730333804884 2.7188977193002635 6.90094732039825 2.9828516222526367 7 88.82806000590398 2.0543166143359364 5.109817858388827 4.007805521371257 8 80.21246659842586 4.304921388892083 9.865588615286708 5.617023397395348 9 57.75529920526298 16.492422586939938 12.21587097120468 13.536407236592407 10 48.56368439010738 17.05138379319202 20.537415513665415 13.847516303035182 11 42.873052932629456 17.5001245969767 22.819457063881828 16.807365406512012 12 19.81034423269348 38.462128269712196 25.099198362220665 16.628329135373658 13 13.867643506964011 40.50839400247661 28.5520681181256 17.071894372433782 14 12.359061650584072 21.974114498870957 47.815144091611366 17.851679758933603 15 14.906398917348115 16.174604452520885 49.05536322894024 19.863633401190764 16 15.435840224504583 19.414317534436687 25.58991876277119 39.55992347828754 17 20.265794104454436 22.302283766739126 33.10925046292569 24.322671665880748 18 26.776273668633383 25.53950490912088 25.17683186308901 22.507389559156728 19 30.29623410430109 21.84587545669584 23.577773432857565 24.280117006145506 20 20.661437427398297 29.3665489704456 25.97942808070817 23.992585521447932 21 21.501221050371683 23.999486277080674 25.80173362316507 28.697559049382576 22 18.670952802665226 29.220674663875695 22.837859078902472 29.270513454556607 23 19.849256826955887 21.366464627876752 38.36570937851028 20.418569166657083 24 18.857656580062184 21.101935661954986 34.97398798501769 25.066419772965137 25 16.58979991642418 33.320681948006644 25.76435453015439 24.325163605414794 26 16.86506339110799 30.440191534306337 27.157540417342364 25.5372046572433 27 17.919920564635163 26.533980470861557 35.80802097829712 19.738077986206157 28 16.09812107759133 24.095905168282595 33.3998489501267 26.40612480399937 29 18.936440206869317 27.212171399434904 28.21718978228116 25.634198611414615 30 28.510855271985612 28.536924793264863 20.450197629973815 22.502022304775707 31 31.242787751925505 26.126452513216865 20.825713748988846 21.805045985868787 32 25.882817501849786 28.047546206309594 21.230749767099496 24.838886524741124 33 18.886984791501334 30.151509923669977 24.992044962256703 25.969460322571987 34 19.72561828853593 27.810045199949396 28.18191925349159 24.282417258023088 35 31.943981199274653 22.82789132076629 23.516433382788748 21.711694097170305 36 21.88191273611127 32.224611928339485 24.65985025360277 21.23362508194647 37 21.721853542962954 31.8395114265012 23.087628095276433 23.35100693525941 38 21.172285031877657 30.608493296682653 24.03283992930559 24.186381742134095 39 26.93844142600281 25.31657216465203 22.62623590616506 25.1187505031801 40 16.733373971116507 23.08072733964369 28.38798348419152 31.797915205048287 41 22.54246840028983 27.18744369175091 21.123979742448466 29.146108165510793 42 23.064433888844164 23.666524817800884 25.33746611920672 27.931575174148236 43 22.664765125114535 28.010933863924762 26.10460012037985 23.219700890580853 44 18.124642981739832 33.29288723781921 22.38758477386607 26.194885006574886 45 23.015745224102037 29.05198952618645 24.39340441111635 23.53886083859516 46 23.09357041262685 25.151337404779156 25.64646662142838 26.108625561165617 47 22.87715504847781 20.541632642107643 31.743667598268676 24.83754471114587 48 21.066473445508947 20.266369167423832 29.08879355622774 29.57836383083948 49 19.874751285265738 27.14182202951223 28.87084469082698 24.11258199439505 50 18.1796573391453 30.629003875924415 25.867099114019652 25.324239670910632 51 21.42147898528222 23.45873539819277 27.739504142370258 27.380281474154756 52 24.646048742337285 21.37815757492112 29.928193803888192 24.0475998788534 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 39.0 1 91.0 2 143.0 3 569.5 4 996.0 5 738.5 6 481.0 7 513.5 8 546.0 9 609.0 10 672.0 11 676.0 12 680.0 13 642.0 14 580.5 15 557.0 16 550.0 17 543.0 18 507.0 19 471.0 20 525.5 21 580.0 22 722.0 23 864.0 24 1056.0 25 1248.0 26 1180.0 27 1112.0 28 1573.5 29 2035.0 30 2701.5 31 3368.0 32 3849.5 33 4331.0 34 4988.0 35 5645.0 36 6833.0 37 8021.0 38 9094.5 39 12078.5 40 13989.0 41 21573.0 42 29157.0 43 38761.0 44 48365.0 45 54291.5 46 60218.0 47 60489.5 48 60761.0 49 59443.0 50 58125.0 51 51138.0 52 44151.0 53 40114.5 54 36078.0 55 31640.5 56 27203.0 57 24670.5 58 22138.0 59 20968.0 60 19798.0 61 19044.0 62 18290.0 63 16974.0 64 12480.0 65 9302.0 66 7836.5 67 6371.0 68 4877.0 69 3383.0 70 2691.5 71 2000.0 72 1631.5 73 1263.0 74 1145.0 75 1027.0 76 941.0 77 855.0 78 547.0 79 239.0 80 185.0 81 131.0 82 75.5 83 20.0 84 25.5 85 31.0 86 27.0 87 23.0 88 12.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 521682.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.749715344023397 #Duplication Level Percentage of deduplicated Percentage of total 1 71.42880934240276 17.678426985869873 2 11.524762128321262 5.7046916416706495 3 4.1122458629762555 3.0533074359990047 4 1.9772434714202112 1.9574485233391554 5 1.0818098918511532 1.3387243439832388 6 0.6742324713056828 1.0012237044307843 7 0.43970135155989637 0.7617738301242855 8 0.3907878958465653 0.7737511345673883 9 0.3473517047397654 0.773717023491341 >10 7.241529195927759 49.236806646434374 >50 0.6528228845557696 10.352108990534308 >100 0.11939991000188661 4.7654088135042825 >500 0.005427268636449391 0.835299370427001 >1k 0.0038766204546067076 1.767311555624323 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT 2752 0.5275244305918165 Illumina Single End Adapter 1 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCTT 2026 0.38835919199819047 Illumina Single End Adapter 1 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT 1791 0.3433125927289038 Illumina Single End Adapter 1 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1607 0.3080420639393347 No Hit TGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCTTG 1034 0.19820503678486126 Illumina Single End Adapter 1 (95% over 24bp) ACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC 822 0.15756725361427076 Illumina Single End Adapter 1 (95% over 21bp) ATATCAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCG 673 0.12900579280097837 No Hit TCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT 623 0.1194214099777259 Illumina Single End Adapter 1 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC 608 0.11654609513075014 Illumina Single End Adapter 1 (95% over 21bp) ACTGTGGACTTAGGCATTTAGATGCTTGAGCCTATGAGGGCCATTTTTATTC 560 0.10734508762042777 No Hit CGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC 558 0.10696171230749768 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3973685118520478 0.0 2 0.0 0.0 0.0 1.4886463401075751 0.0 3 0.0 0.0 0.0 2.3527742954520185 0.0 4 0.0 0.0 0.0 2.8580629578938894 0.0 5 0.0 0.0 0.0 5.517920879002918 0.0 6 0.0 0.0 0.0 5.903021380841202 0.0 7 0.0 0.0 0.0 7.300999459440809 0.0 8 0.0 0.0 0.0 8.920951844226943 0.0 9 0.0 0.0 0.0 9.950122871787794 0.0 10 0.0 0.0 0.0 10.854121859676967 0.0 11 0.0 0.0 0.0 11.67761203185082 0.0 12 0.0 0.0 0.0 12.456822355381247 0.0 13 0.0 0.0 0.0 12.765439482289977 0.0 14 0.0 0.0 0.0 13.000256861459663 0.0 15 0.0 0.0 0.0 13.79537726047669 0.0 16 0.0 0.0 0.0 14.684041235848659 0.0 17 0.0 0.0 0.0 15.807330902733849 0.0 18 0.0 0.0 0.0 16.33274676910455 0.0 19 0.0 0.0 0.0 16.986976740619763 0.0 20 0.0 0.0 0.0 17.769637441966562 0.0 21 0.0 0.0 0.0 18.3776706882737 0.0 22 0.0 0.0 0.0 19.15822282539938 0.0 23 0.0 0.0 0.0 19.678846500358457 0.0 24 0.0 0.0 0.0 20.117619546006953 0.0 25 0.0 0.0 0.0 20.582270425278235 0.0 26 0.0 0.0 0.0 20.944176720684247 0.0 27 0.0 0.0 0.0 21.379882763829308 0.0 28 0.0 0.0 0.0 21.76536664098052 0.0 29 0.0 0.0 0.0 22.293274446885267 0.0 30 0.0 0.0 0.0 22.807955804493925 0.0 31 0.0 0.0 0.0 23.199765374308488 0.0 32 0.0 0.0 0.0 23.593300133031235 0.0 33 0.0 0.0 0.0 24.018271667414247 0.0 34 0.0 0.0 0.0 24.597743452908094 0.0 35 0.0 0.0 0.0 24.99127821163084 0.0 36 0.0 0.0 0.0 25.411265866945765 0.0 37 0.0 0.0 0.0 25.804033875042652 0.0 38 0.0 0.0 0.0 26.197185258452468 0.0 39 0.0 0.0 0.0 26.64190062145138 0.0 40 0.0 0.0 0.0 27.063613465674493 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATCAG 20 6.3082675E-4 46.000004 45 CGGACAA 20 6.3082675E-4 46.000004 34 AAGTAGT 20 6.3082675E-4 46.000004 13 TTAGGCA 55 1.8189894E-12 46.000004 10 CGAACTC 20 6.3082675E-4 46.000004 12 TCCGCTT 20 6.3082675E-4 46.000004 12 GTCGAAC 20 6.3082675E-4 46.000004 10 TAGACCC 20 6.3082675E-4 46.000004 13 GGGTCGT 20 6.3082675E-4 46.000004 28 AGCTTAC 20 6.3082675E-4 46.000004 10 GACCGGC 20 6.3082675E-4 46.000004 33 GGCAACC 20 6.3082675E-4 46.000004 7 ATTCGTC 20 6.3082675E-4 46.000004 33 TTCGTCT 20 6.3082675E-4 46.000004 34 AGGGTAC 20 6.3082675E-4 46.000004 5 GTAGCGA 20 6.3082675E-4 46.000004 28 CTAACGG 70 0.0 46.000004 1 AGTGCCC 20 6.3082675E-4 46.000004 8 TGACCGT 20 6.3082675E-4 46.000004 18 CCATCGA 20 6.3082675E-4 46.000004 11 >>END_MODULE