SRR1544819_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544819_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1012220
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	8073	0.7975538914465236	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	5779	0.5709233170654601	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCTT	4808	0.47499555432613466	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	3795	0.37491849597913496	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	3234	0.319495761790915	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	2741	0.27079093477702476	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2713	0.26802473770524193	No Hit
TGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCTTG	2533	0.250242042243781	Illumina Single End Adapter 1 (95% over 22bp)
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1763	0.17417162276975362	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1693	0.16725613009029658	No Hit
ACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1346	0.13297504495070242	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	1297	0.1281342000750825	No Hit
CGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1271	0.12556558850842703	No Hit
GCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1239	0.12240422042638952	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1182	0.11677303353026022	No Hit
GGGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT	1065	0.10521428148031062	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1020	0.10076860761494538	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACG	45	3.092282E-10	46.0	25
CAATCGT	20	6.3110964E-4	46.0	11
CCCGCTA	20	6.3110964E-4	46.0	14
ACGGGTA	95	0.0	43.578945	4
TCGGCGT	1100	0.0	43.072727	4
CTAACGG	75	0.0	42.933334	1
GCGTAGG	150	0.0	42.933334	1
AGTACGG	70	0.0	42.714287	1
GTCGGCG	1115	0.0	42.286995	3
CTTGCGG	370	0.0	42.27027	1
TAGACGG	60	1.8189894E-12	42.166668	1
GTCCCCC	1130	0.0	42.132744	9
CACGAGG	110	0.0	41.81818	1
CGTTTTT	1025	0.0	41.736588	1
GCGTCCC	1145	0.0	41.580784	7
CGATAGT	50	8.712959E-10	41.399998	9
TAGTAGG	200	0.0	41.399998	1
CTAGCGG	290	0.0	41.241383	1
TCCCCCA	1160	0.0	40.84483	10
ATTGCGG	250	0.0	40.48	1