SRR1544816_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544816_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	792434
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTT	3729	0.4705754674837273	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	3549	0.44786064202192233	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	2656	0.3351698690364118	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1593	0.20102620533697443	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1211	0.15282029796803268	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1073	0.1354055984473155	No Hit
TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	1071	0.13515321149773987	No Hit
ACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	985	0.12430057266598858	No Hit
CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	933	0.11773851197702269	No Hit
GCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	878	0.11079787086369337	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	155	0.0	46.000004	1
CCGTAGG	35	1.01903424E-7	46.000004	1
TACGATC	55	1.8189894E-12	46.000004	23
ACACGAC	25	3.416189E-5	46.0	25
CGTATCT	20	6.310262E-4	46.0	42
ATTAGCG	20	6.310262E-4	46.0	1
TTTCGTA	20	6.310262E-4	46.0	39
CGTTGCG	25	3.416189E-5	46.0	27
AGGGTAC	80	0.0	46.0	5
CTAACGG	50	1.6370905E-11	46.0	1
TCGGACG	20	6.310262E-4	46.0	20
TACGCCA	20	6.310262E-4	46.0	23
CTTGCGT	20	6.310262E-4	46.0	21
ACGTGTA	25	3.416189E-5	46.0	35
GTACTTG	20	6.310262E-4	46.0	8
GTTCACC	25	3.416189E-5	46.0	40
CGTAATT	20	6.310262E-4	46.0	44
CGTAAAT	20	6.310262E-4	46.0	20
ACGTAAA	20	6.310262E-4	46.0	19
CGGTCAT	20	6.310262E-4	46.0	5