##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544815_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 597141 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.87280558528053 34.0 33.0 34.0 31.0 34.0 2 33.23114641265631 34.0 33.0 34.0 31.0 34.0 3 33.33164361515957 34.0 34.0 34.0 31.0 34.0 4 36.57408551749084 37.0 37.0 37.0 35.0 37.0 5 36.57173933794531 37.0 37.0 37.0 35.0 37.0 6 36.49067975570259 37.0 37.0 37.0 35.0 37.0 7 36.35745326480681 37.0 37.0 37.0 35.0 37.0 8 36.415169951485495 37.0 37.0 37.0 35.0 37.0 9 38.28250446711915 39.0 39.0 39.0 37.0 39.0 10 38.14736050614511 39.0 39.0 39.0 35.0 39.0 11 37.45826697547145 39.0 35.0 39.0 35.0 39.0 12 37.38441842044006 39.0 35.0 39.0 35.0 39.0 13 37.37500858256258 39.0 35.0 39.0 35.0 39.0 14 38.61195094625892 41.0 35.0 41.0 35.0 41.0 15 38.67642483098631 41.0 35.0 41.0 35.0 41.0 16 38.69012176353659 41.0 35.0 41.0 35.0 41.0 17 38.775275856121084 41.0 36.0 41.0 35.0 41.0 18 38.766207646100334 41.0 36.0 41.0 35.0 41.0 19 38.68651959922364 41.0 35.0 41.0 35.0 41.0 20 38.61023778303617 41.0 35.0 41.0 35.0 41.0 21 38.564312281353985 41.0 35.0 41.0 35.0 41.0 22 38.54806988634175 40.0 35.0 41.0 35.0 41.0 23 38.51846548805056 40.0 35.0 41.0 35.0 41.0 24 38.462237561982846 40.0 35.0 41.0 35.0 41.0 25 38.41840201895365 40.0 35.0 41.0 35.0 41.0 26 38.344593655434814 40.0 35.0 41.0 35.0 41.0 27 38.30905096116328 40.0 35.0 41.0 35.0 41.0 28 38.363989409536444 40.0 35.0 41.0 35.0 41.0 29 38.41674746835337 40.0 36.0 41.0 35.0 41.0 30 38.36458390899302 40.0 35.0 41.0 35.0 41.0 31 38.310037327867285 40.0 35.0 41.0 35.0 41.0 32 38.26326612977505 40.0 35.0 41.0 35.0 41.0 33 38.20531164331372 40.0 35.0 41.0 35.0 41.0 34 38.08284308061245 40.0 35.0 41.0 35.0 41.0 35 38.033563262278086 40.0 35.0 41.0 35.0 41.0 36 37.985765505969276 40.0 35.0 41.0 35.0 41.0 37 37.90091452437532 40.0 35.0 41.0 35.0 41.0 38 37.86809647972589 40.0 35.0 41.0 35.0 41.0 39 37.83294230340908 40.0 35.0 41.0 35.0 41.0 40 37.800119234820585 40.0 35.0 41.0 35.0 41.0 41 37.778367253295286 40.0 35.0 41.0 35.0 41.0 42 37.714437628633775 40.0 35.0 41.0 35.0 41.0 43 37.636780927787576 39.0 35.0 41.0 35.0 41.0 44 37.503373575085284 39.0 35.0 41.0 35.0 41.0 45 37.51090613439707 39.0 35.0 41.0 35.0 41.0 46 37.45971386992352 39.0 35.0 41.0 35.0 41.0 47 37.39142011685682 39.0 35.0 41.0 35.0 41.0 48 37.35525277949429 39.0 35.0 41.0 35.0 41.0 49 37.312942839295914 39.0 35.0 41.0 35.0 41.0 50 37.240949792427585 39.0 35.0 41.0 35.0 41.0 51 37.168320379943765 38.0 35.0 41.0 34.0 41.0 52 36.75620498341263 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 4.0 14 9.0 15 9.0 16 14.0 17 21.0 18 39.0 19 66.0 20 119.0 21 197.0 22 318.0 23 495.0 24 867.0 25 1476.0 26 2213.0 27 2527.0 28 2482.0 29 2829.0 30 3260.0 31 4209.0 32 5579.0 33 8539.0 34 29107.0 35 127008.0 36 21090.0 37 32632.0 38 59583.0 39 290118.0 40 2330.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.0279464983982 21.744445616696893 23.34724964455631 22.880358240348595 2 26.690681095419677 24.261439090600042 26.690178701512707 22.357701112467574 3 27.713052696096902 24.04926139722444 25.782687840895196 22.454998065783457 4 26.19582309705748 26.346038875240517 23.67698751216212 23.78115051553988 5 24.127969775982557 34.38417392207201 21.144419827143 20.343436474802434 6 83.72829867652698 3.06828705448127 9.132851370111917 4.070562898879829 7 85.23045645835741 2.528548533763382 6.745475524206175 5.495519483673035 8 73.69850671784386 5.100637872797212 12.9929112219727 8.207944187386229 9 50.50515707345501 18.41122950860852 15.452631790481645 15.630981627454824 10 42.046853255763715 19.12194942233074 25.16105911334174 13.670138208563806 11 38.87256108691247 17.418834077713637 24.005720591953995 19.702884243419895 12 20.241785440959507 32.899097533078454 28.566117550126354 18.292999475835693 13 14.521695880872358 35.94829361909499 29.586312110540057 19.9436983894926 14 13.080997620327528 24.175362267873084 43.25929721791001 19.484342893889384 15 15.325693596654727 18.00228086833763 46.46390048581491 20.208125049192738 16 16.451558342167093 21.90772363646107 26.604101878785748 35.03661614258609 17 18.60297651643414 24.476296218146132 31.739572395799314 25.18115486962041 18 23.996342572357282 27.521808082178246 27.502047255170893 20.979802090293582 19 27.298577722849377 22.489160851457193 25.077159330878303 25.135102094815124 20 19.74625758405469 29.79346586484599 28.018675656168305 22.441600894931014 21 20.38178587636756 23.9141174362504 26.626709604599245 29.077387082782792 22 17.753428419753458 29.028487409171365 24.346678590148727 28.871405580926446 23 18.74347934574916 21.832029621144756 36.657171421825 22.767319611281085 24 20.078339956559674 21.784302199982918 32.97211211422428 25.165245729233128 25 16.409189789346236 30.17980677930338 28.245255308210286 25.165748123140098 26 17.068498059922195 27.306281096089535 29.771360532939457 25.853860311048816 27 19.583314493561822 24.661344640545533 36.586668810214 19.16867205567864 28 16.063040387446183 24.265793171127086 31.882419730013517 27.788746711413214 29 18.63211536303821 25.624601224836347 30.412582622864615 25.33070078926083 30 24.60591384614354 24.388377284426962 24.521009275866167 26.484699593563327 31 25.32316488065633 23.56026466111019 23.28729730499162 27.829273153241864 32 22.320189034080727 27.282501117826442 25.710678047563306 24.686631800529526 33 17.326393598831764 22.7209319072045 28.843104057500657 31.10957043646308 34 17.899457582045113 22.285188925228717 29.858274678844694 29.957078813881477 35 24.354884357295848 21.521215257368027 25.635988820060923 28.487911565275205 36 22.72344387673933 25.487950082141403 25.858716785482827 25.92988925563644 37 19.023647681200924 26.08244953871866 26.060679136083436 28.83322364399698 38 19.63522853061505 25.17244670856632 24.074213627937123 31.118111132881516 39 26.518862379237063 20.63130818349435 25.861731148924626 26.98809828834396 40 17.275484349592475 18.403861064639678 31.590361405430205 32.73029318033765 41 21.26382211236542 23.259833104744107 24.720124727660636 30.75622005522984 42 21.552363679599964 20.7366434393217 28.979587735559942 28.731405145518394 43 23.074449753073395 24.720962050838914 27.52415258707742 24.680435609010267 44 17.36775736383869 27.726952260856315 26.54900601365507 28.35628436164993 45 20.41377162177777 23.863710580918074 27.02276346792466 28.699754329379495 46 22.84837249493838 20.743007095476614 27.980996113145807 28.4276242964392 47 20.771308618902403 18.352616886129073 33.05735161377296 27.818722881195562 48 19.72800393876823 17.265101542181828 29.004037572365654 34.00285694668428 49 19.088121565928315 22.516792516340363 31.373159772984938 27.021926144746384 50 18.91345595093956 23.356292734881713 28.507839856918217 29.22241145726051 51 20.53585334117068 19.09096846473446 29.26176564663957 31.11141254745529 52 21.559732123568807 17.909003066277478 34.25589601115984 26.27536879899387 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 134.0 1 179.5 2 225.0 3 881.5 4 1538.0 5 1089.0 6 640.0 7 718.0 8 796.0 9 818.0 10 840.0 11 819.5 12 799.0 13 822.5 14 757.5 15 669.0 16 709.0 17 749.0 18 712.0 19 675.0 20 806.5 21 938.0 22 1023.5 23 1109.0 24 1197.5 25 1286.0 26 1588.5 27 1891.0 28 2260.0 29 2629.0 30 3199.0 31 3769.0 32 4308.0 33 4847.0 34 6206.0 35 7565.0 36 7820.0 37 8075.0 38 9609.5 39 13247.0 40 15350.0 41 21681.0 42 28012.0 43 35334.5 44 42657.0 45 47052.0 46 51447.0 47 52165.5 48 52884.0 49 62736.0 50 72588.0 51 75094.0 52 77600.0 53 66760.0 54 55920.0 55 47362.5 56 38805.0 57 32573.5 58 26342.0 59 23537.0 60 20732.0 61 19737.0 62 18742.0 63 17609.0 64 13665.5 65 10855.0 66 8764.0 67 6673.0 68 5264.5 69 3856.0 70 3355.5 71 2855.0 72 2259.5 73 1664.0 74 1337.0 75 1010.0 76 817.0 77 624.0 78 548.0 79 472.0 80 375.5 81 279.0 82 193.5 83 108.0 84 57.0 85 6.0 86 8.5 87 11.0 88 5.5 89 1.5 90 3.0 91 1.5 92 0.0 93 1.5 94 3.0 95 3.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 597141.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.304179216726332 #Duplication Level Percentage of deduplicated Percentage of total 1 69.28292895308311 18.91713508794699 2 12.432082513197088 6.788956179549254 3 4.759018207391151 3.89823258090815 4 2.240659029909418 2.447174228648916 5 1.2956001601306635 1.7687649482713488 6 0.827637611162651 1.3558779397012972 7 0.5861212282540486 1.1202491341283412 8 0.4831450913268616 1.0553504129016191 9 0.38663411073382703 0.9501054345698425 >10 7.272274045106805 46.3449486744315 >50 0.32680907147949495 6.061762687622178 >100 0.09601170461544484 4.8567033553717165 >500 0.006154596449708003 1.155485701931972 >1k 0.004923677159766402 3.279253634016943 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 4886 0.8182322098130927 No Hit CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTT 4127 0.6911265513505185 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 2963 0.4961977154474404 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 2230 0.3734461375119109 No Hit TGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCTTG 2070 0.34665179580702044 Illumina Single End Adapter 2 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 1154 0.19325418954652251 No Hit CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC 1057 0.17701011988793267 No Hit ACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC 1027 0.17198618081826572 No Hit GCCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC 949 0.15892393923713158 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 837 0.14016790004370827 No Hit AGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC 757 0.12677072919126303 No Hit ACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 726 0.1215793254859405 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 716 0.11990467912938484 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT 618 0.10349314483513944 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 598 0.10014385212202813 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7018442880324748 0.0 2 0.0 0.0 0.0 2.3567298175807725 0.0 3 0.0 0.0 0.0 3.5358483172316086 0.0 4 0.0 0.0 0.0 4.3103722571385985 0.0 5 0.0 0.0 0.0 7.988063120770471 0.0 6 0.0 0.0 0.0 8.577873567549373 0.0 7 0.0 0.0 0.0 10.807330262031915 0.0 8 0.0 0.0 0.0 13.368032005841167 0.0 9 0.0 0.0 0.0 15.404736904684153 0.0 10 0.0 0.0 0.0 16.742946808207776 0.0 11 0.0 0.0 0.0 18.023883806337196 0.0 12 0.0 0.0 0.0 19.228122001336367 0.0 13 0.0 0.0 0.0 19.678769335885494 0.0 14 0.0 0.0 0.0 20.017215364545393 0.0 15 0.0 0.0 0.0 21.106237890213535 0.0 16 0.0 0.0 0.0 22.2637534518648 0.0 17 0.0 0.0 0.0 23.855839743042264 0.0 18 0.0 0.0 0.0 24.569574020206282 0.0 19 0.0 0.0 0.0 25.40572494603452 0.0 20 0.0 0.0 0.0 26.428598940618716 0.0 21 0.0 0.0 0.0 27.281328865376853 0.0 22 0.0 0.0 0.0 28.214776744520975 0.0 23 0.0 0.0 0.0 28.885807539592825 0.0 24 0.0 0.0 0.0 29.48432614742582 0.0 25 0.0 0.0 0.0 30.038801556081395 0.0 26 0.0 0.0 0.0 30.530812655637448 0.0 27 0.0 0.0 0.0 31.04660373345659 0.0 28 0.0 0.0 0.0 31.575289588221207 0.0 29 0.0 0.0 0.0 32.22773180873529 0.0 30 0.0 0.0 0.0 32.860915596148985 0.0 31 0.0 0.0 0.0 33.4182379036107 0.0 32 0.0 0.0 0.0 33.933024193615914 0.0 33 0.0 0.0 0.0 34.41917403092402 0.0 34 0.0 0.0 0.0 35.092716795530706 0.0 35 0.0 0.0 0.0 35.59795760130354 0.0 36 0.0 0.0 0.0 36.11810275964973 0.0 37 0.0 0.0 0.0 36.603917667686524 0.0 38 0.0 0.0 0.0 37.077172728049156 0.0 39 0.0 0.0 0.0 37.60217436082935 0.0 40 0.0 0.0 0.0 38.14509470962469 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGG 20 6.309006E-4 46.0 1 TCGTTCA 40 5.6043064E-9 46.0 15 ATCTCGA 20 6.309006E-4 46.0 39 AGATCTA 20 6.309006E-4 46.0 15 CCGATTT 20 6.309006E-4 46.0 11 CGACCCG 20 6.309006E-4 46.0 31 TAACGGG 60 0.0 46.0 2 CGTTACG 20 6.309006E-4 46.0 20 GTTACGA 20 6.309006E-4 46.0 21 CTAACGG 20 6.309006E-4 46.0 1 TACGATC 20 6.309006E-4 46.0 23 ACTACGG 20 6.309006E-4 46.0 1 ATAAGCG 60 0.0 46.0 32 CTCGAGG 100 0.0 46.0 1 CGGTCTA 20 6.309006E-4 46.0 30 ACGTAGG 30 1.8598894E-6 46.0 1 GGCGATA 55 1.8189894E-12 46.0 7 TTCGCCC 20 6.309006E-4 46.0 14 AGGGCGC 20 6.309006E-4 46.0 5 TCGAACC 20 6.309006E-4 46.0 12 >>END_MODULE