SRR1544807_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544807_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1136107
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	8451	0.743855992437332	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCTT	7535	0.6632297838143767	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	5018	0.4416837498580679	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	4126	0.36317001831693674	No Hit
TGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCTTG	3767	0.3315708819679837	Illumina Single End Adapter 1 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	1945	0.17119866350616622	No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	1850	0.16283677505727895	Illumina Single End Adapter 1 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	1822	0.16037221846181743	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	1781	0.1567634034470345	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1658	0.14593695840268567	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1405	0.12366792916512265	No Hit
CTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCTTGAAA	1399	0.12313980989466661	Illumina Single End Adapter 1 (95% over 23bp)
AGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	1397	0.12296377013784794	No Hit
ACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	1367	0.12032317378556773	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	20	6.311425E-4	46.0	7
TGCGCAA	20	6.311425E-4	46.0	18
ACGTCTA	20	6.311425E-4	46.0	15
ATGCGTA	25	3.4171302E-5	46.0	37
ACGTAGG	110	0.0	46.0	1
CATGCGG	180	0.0	44.72222	1
CGGGTAT	120	0.0	44.083332	5
TCGTTCA	95	0.0	43.578945	15
TCGATGG	95	0.0	43.578945	1
ATAGCGG	160	0.0	43.125	1
AAATCGG	70	0.0	42.714283	1
ACGGGAT	270	0.0	42.592594	4
GCGATGT	65	0.0	42.46154	8
CGTTTTT	1455	0.0	42.36426	1
GCTACGA	185	0.0	42.27027	10
CTAACGG	120	0.0	42.166668	1
GTCGGCG	620	0.0	41.919353	3
TAACGGG	340	0.0	41.264706	2
GGACTAA	945	0.0	41.13228	7
TATGCGG	275	0.0	40.98182	1