SRR1544780_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544780_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1377989
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	4670	0.33889965739929706	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCTT	3839	0.27859438645736645	Illumina Single End Adapter 2 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3418	0.24804261862757976	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	3340	0.24238219608429387	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2777	0.20152555644493533	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	1412	0.10246816193743202	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1384	0.10043621538343193	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1380	0.10014593730428907	No Hit
GGACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTG	1380	0.10014593730428907	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAC	20	6.3118944E-4	46.0	8
TCTTACG	20	6.3118944E-4	46.0	38
CCGTAGG	60	0.0	46.0	1
TTCGCGA	20	6.3118944E-4	46.0	1
TCACGTC	45	3.110472E-10	46.0	38
CTAACGG	125	0.0	45.999996	1
CTACGAA	135	0.0	44.2963	11
TACGCGG	150	0.0	42.933334	1
CGTAGGG	535	0.0	42.560745	2
GACTAAT	410	0.0	40.95122	8
ATACCGG	45	1.5888872E-8	40.88889	1
CGTTTTT	2180	0.0	40.830276	1
CATACGA	610	0.0	40.72131	17
TAGGGTA	255	0.0	40.588238	4
CTCACGA	85	0.0	40.588234	23
TCGTCAA	40	2.911147E-7	40.25	46
CTTATGA	1190	0.0	40.20168	25
ACCCGCA	1110	0.0	40.198196	31
CGAATAT	155	0.0	40.064514	14
CGGGATA	415	0.0	39.903614	5