FastQCFastQC Report
Thu 26 May 2016
SRR1544776_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1544776_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1245687
Sequences flagged as poor quality0
Sequence length52
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT49000.3933572398202759No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCTT41690.3346747617981082Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA35250.2829763817074434No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT26940.2162662049134333No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23190.18616233451902445No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC17070.13703281803534917No Hit
GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT16820.13502589334238857No Hit
GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA13990.11230750581807468No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC12520.10050678862346642No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTA405.6115823E-946.00000422
GTCGACA206.311658E-446.00000412
GAGTACG206.311658E-446.00000435
CGCGATT206.311658E-446.00000432
ATCGTTC206.311658E-446.00000431
CGTTACA206.311658E-446.00000435
CCGTAAC206.311658E-446.00000445
TCGTATA206.311658E-446.00000428
CATACGT206.311658E-446.00000445
ACTCGAT206.311658E-446.00000431
TCATCGG206.311658E-446.0000041
CCGACAA206.311658E-446.00000435
AAAGCGT206.311658E-446.0000045
TCGCGAT206.311658E-446.00000431
ACGACGT206.311658E-446.00000414
GTACGCA206.311658E-446.00000435
GCATACA206.311658E-446.00000433
GTCGAAT253.417322E-546.010
CGACGGA301.8615301E-646.027
TTATCGG301.8615301E-646.01