SRR1544776_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544776_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1245687
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	4900	0.3933572398202759	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCTT	4169	0.3346747617981082	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	3525	0.2829763817074434	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	2694	0.2162662049134333	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2319	0.18616233451902445	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1707	0.13703281803534917	No Hit
GCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATCAATAATT	1682	0.13502589334238857	No Hit
GACCCACCAAACTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTA	1399	0.11230750581807468	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	1252	0.10050678862346642	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTA	40	5.6115823E-9	46.000004	22
GTCGACA	20	6.311658E-4	46.000004	12
GAGTACG	20	6.311658E-4	46.000004	35
CGCGATT	20	6.311658E-4	46.000004	32
ATCGTTC	20	6.311658E-4	46.000004	31
CGTTACA	20	6.311658E-4	46.000004	35
CCGTAAC	20	6.311658E-4	46.000004	45
TCGTATA	20	6.311658E-4	46.000004	28
CATACGT	20	6.311658E-4	46.000004	45
ACTCGAT	20	6.311658E-4	46.000004	31
TCATCGG	20	6.311658E-4	46.000004	1
CCGACAA	20	6.311658E-4	46.000004	35
AAAGCGT	20	6.311658E-4	46.000004	5
TCGCGAT	20	6.311658E-4	46.000004	31
ACGACGT	20	6.311658E-4	46.000004	14
GTACGCA	20	6.311658E-4	46.000004	35
GCATACA	20	6.311658E-4	46.000004	33
GTCGAAT	25	3.417322E-5	46.0	10
CGACGGA	30	1.8615301E-6	46.0	27
TTATCGG	30	1.8615301E-6	46.0	1