SRR1544769_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544769_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1730772
Sequences flagged as poor quality	0
Sequence length	52
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	12696	0.7335454929938778	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT	10713	0.6189723429775845	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	8353	0.48261700559056886	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	7057	0.40773712539837714	No Hit
TGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTTG	5301	0.3062795099527841	Illumina Single End Adapter 1 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3791	0.2190352050992274	No Hit
CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2812	0.16247085115774926	No Hit
TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	2533	0.146350876949708	No Hit
ACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2468	0.1425953274030317	No Hit
GCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2379	0.1374531134083519	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1966	0.11359092936562414	No Hit
AGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1889	0.10914204759494607	No Hit
ACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	1793	0.10359538980293187	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	75	0.0	46.000004	1
AATCCGT	20	6.312345E-4	46.0	10
CGACCGA	20	6.312345E-4	46.0	12
TATCGAA	20	6.312345E-4	46.0	31
GGCGATA	245	0.0	45.061226	7
ATCGAGG	150	0.0	44.46667	1
GCGATAG	110	0.0	43.909092	8
CGTTTTT	2020	0.0	43.267326	1
CGGGTAT	295	0.0	42.881355	5
TCGGCGT	1230	0.0	42.260162	4
TTAATCG	300	0.0	42.166668	19
TAATCGT	300	0.0	42.166668	20
GTCCCCC	1220	0.0	42.04098	9
ATAGCGG	290	0.0	42.034485	1
TACGGGA	355	0.0	41.46479	3
GGTATGC	340	0.0	41.264706	7
GTCGGCG	1270	0.0	40.929134	3
ATTACGG	90	0.0	40.88889	1
ATTCGAT	45	1.589251E-8	40.88889	13
GCGTCCC	1285	0.0	40.809338	7