SRR1544766_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544766_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1519983
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	5672	0.37316206825997394	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTT	4067	0.2675687820192726	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	3771	0.24809488000852642	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2874	0.189081062090826	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2205	0.14506741193815983	No Hit
ACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1684	0.11079071279086673	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1640	0.10789594357305313	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1574	0.1035537897463327	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATA	20	6.3120987E-4	46.000004	14
ACGGGTA	40	5.6134013E-9	46.000004	4
CGCTAGC	20	6.3120987E-4	46.000004	46
AACGCCT	20	6.3120987E-4	46.000004	16
GCGATCG	20	6.3120987E-4	46.000004	8
GTACGAC	20	6.3120987E-4	46.000004	29
ACGTTAT	25	3.4176795E-5	46.0	9
CTAACGG	190	0.0	46.0	1
GTGTCGA	30	1.861803E-6	46.0	30
CCAACGA	25	3.4176795E-5	46.0	28
CGTGACG	35	1.0198528E-7	45.999996	18
CGTAGGG	675	0.0	43.95556	2
TTCACGG	105	0.0	43.809525	1
TTACGGG	540	0.0	43.444443	2
CATGCGG	330	0.0	43.21212	1
TAACGGG	390	0.0	43.051285	2
CGTTTTT	2065	0.0	42.992737	1
GTCGAGG	145	0.0	42.827583	1
AATGCGG	320	0.0	42.406254	1
TACGGGT	125	0.0	42.32	3