SRR1544765_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544765_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1070544
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	6678	0.623795005156257	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTT	4644	0.4337981437474779	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	4019	0.3754166106203949	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	3448	0.32207924195549176	No Hit
TGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTTG	2340	0.21858046002779896	Illumina Single End Adapter 2 (95% over 22bp)
ACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1605	0.1499237770703493	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1554	0.1451598439671793	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	1502	0.140302500411006	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1454	0.135818798666846	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1296	0.12105994709231943	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1293	0.12077971573330942	No Hit
AGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1135	0.10602086415878283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATACG	35	1.019489E-7	46.000004	9
CGAAACG	25	3.416997E-5	46.0	34
CCTGTCG	20	6.311259E-4	46.0	39
ACGGGTA	30	1.8612827E-6	46.0	4
TCATCGG	20	6.311259E-4	46.0	1
ATAACGG	40	5.6115823E-9	46.0	1
CGGTAAG	20	6.311259E-4	46.0	30
CAGACGA	20	6.311259E-4	46.0	41
TACGGGA	240	0.0	44.083332	3
TTACGGG	325	0.0	43.876923	2
GTCCCCC	420	0.0	43.809525	9
TCGAAGG	105	0.0	43.809525	1
CGTAGGG	395	0.0	43.670883	2
TACGGGT	75	0.0	42.93333	3
CGAATAT	145	0.0	42.827583	14
ATTGCGG	210	0.0	42.714287	1
TAACGGG	260	0.0	42.46154	2
CGAGGGT	130	0.0	42.46154	3
ATAGCGG	195	0.0	42.461536	1
TATGCGG	115	0.0	42.0	1