##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544765_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1070544 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.94190150054552 34.0 33.0 34.0 31.0 34.0 2 33.28842906036557 34.0 34.0 34.0 31.0 34.0 3 33.386353106458024 34.0 34.0 34.0 31.0 34.0 4 36.614845349654004 37.0 37.0 37.0 35.0 37.0 5 36.6129883498483 37.0 37.0 37.0 35.0 37.0 6 36.557962120193096 37.0 37.0 37.0 35.0 37.0 7 36.464378857851706 37.0 37.0 37.0 35.0 37.0 8 36.486127613624475 37.0 37.0 37.0 35.0 37.0 9 38.31373114977058 39.0 39.0 39.0 37.0 39.0 10 38.19808433842981 39.0 39.0 39.0 35.0 39.0 11 37.7048892899311 39.0 37.0 39.0 35.0 39.0 12 37.68681156496137 39.0 37.0 39.0 35.0 39.0 13 37.672666420063074 39.0 37.0 39.0 35.0 39.0 14 38.99132590533411 41.0 38.0 41.0 35.0 41.0 15 39.016134787547266 41.0 38.0 41.0 35.0 41.0 16 39.00127692089256 41.0 38.0 41.0 35.0 41.0 17 39.05278998341031 41.0 37.0 41.0 35.0 41.0 18 39.06198250609036 41.0 37.0 41.0 35.0 41.0 19 39.01709598110867 41.0 37.0 41.0 35.0 41.0 20 38.95332746715688 41.0 37.0 41.0 35.0 41.0 21 38.89714014557085 41.0 36.0 41.0 35.0 41.0 22 38.88567588067375 41.0 36.0 41.0 35.0 41.0 23 38.85592651960125 41.0 36.0 41.0 35.0 41.0 24 38.78753885874845 41.0 36.0 41.0 35.0 41.0 25 38.736895447548164 41.0 36.0 41.0 35.0 41.0 26 38.671113004229625 41.0 35.0 41.0 35.0 41.0 27 38.646457315159395 41.0 36.0 41.0 35.0 41.0 28 38.698810137649645 41.0 36.0 41.0 35.0 41.0 29 38.729184414652735 41.0 36.0 41.0 35.0 41.0 30 38.69424703702043 41.0 36.0 41.0 35.0 41.0 31 38.676512128413215 41.0 35.0 41.0 35.0 41.0 32 38.62837585377154 41.0 36.0 41.0 35.0 41.0 33 38.56639241357665 41.0 36.0 41.0 35.0 41.0 34 38.50524219462255 41.0 35.0 41.0 35.0 41.0 35 38.43269122987939 40.0 35.0 41.0 35.0 41.0 36 38.40339677771301 40.0 35.0 41.0 35.0 41.0 37 38.36239239115814 40.0 35.0 41.0 35.0 41.0 38 38.293100517120266 40.0 35.0 41.0 35.0 41.0 39 38.243177300512635 40.0 35.0 41.0 35.0 41.0 40 38.1748942593672 40.0 35.0 41.0 35.0 41.0 41 38.143879186656505 40.0 35.0 41.0 35.0 41.0 42 38.08610575557847 40.0 35.0 41.0 35.0 41.0 43 38.010136902359925 40.0 35.0 41.0 35.0 41.0 44 37.86899837839454 40.0 35.0 41.0 35.0 41.0 45 37.828871115993365 40.0 35.0 41.0 35.0 41.0 46 37.76377337129534 40.0 35.0 41.0 35.0 41.0 47 37.66829761317611 39.0 35.0 41.0 35.0 41.0 48 37.58668957090974 39.0 35.0 41.0 35.0 41.0 49 37.51443378319807 39.0 35.0 41.0 35.0 41.0 50 37.32793887967239 39.0 35.0 41.0 35.0 41.0 51 37.153759210270664 39.0 35.0 40.0 34.0 41.0 52 36.72199274387601 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 4.0 14 7.0 15 8.0 16 30.0 17 44.0 18 73.0 19 140.0 20 209.0 21 350.0 22 566.0 23 900.0 24 1481.0 25 2334.0 26 3352.0 27 4112.0 28 4342.0 29 4603.0 30 5652.0 31 7131.0 32 9369.0 33 13394.0 34 44731.0 35 177254.0 36 36990.0 37 59091.0 38 116151.0 39 574871.0 40 3353.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.463536295565618 22.30921849078599 23.742228250310124 22.485016963338264 2 25.955588934224096 24.50333662138128 27.050359443423154 22.490715000971466 3 26.458604223647043 24.64662825628839 25.75924016201109 23.135527358053476 4 26.937052563930113 26.384623144868403 23.260043491906917 23.418280799294564 5 25.08612443766907 34.49321092827572 20.2214014557085 20.199263178346712 6 86.66575124422722 2.6675223064161773 7.394091228384821 3.2726352209717673 7 88.47445784573077 2.150028396777713 5.333736866490308 4.041776891001211 8 77.98138142850738 4.561792882870765 10.4932632381294 6.96356245049246 9 44.33278781628779 19.72735356977387 13.642036198418747 22.297822415519587 10 35.23414264149815 19.694006038051683 27.4299795244287 17.641871796021462 11 33.78347830635639 19.71810593492654 24.933958809726644 21.564456948990422 12 21.326633935643933 29.36236156570865 28.502424935359965 20.80857956328745 13 16.96165687725119 32.14094890074579 30.190632052489203 20.70676216951382 14 16.59333946105905 25.389428178570896 37.215378349698845 20.80185401067121 15 18.531699771331212 20.931227488080825 40.13034494612085 20.406727794467113 16 18.910198926900716 23.143373836105756 27.203832817707635 30.742594419285897 17 20.024865862589486 24.8907097699861 30.48151220314158 24.60291216428283 18 23.25920279782989 27.873118713476515 27.447073637328312 21.420604851365287 19 26.674756011896754 23.875992019010894 25.364954639884026 24.08429732920833 20 22.052152924120822 28.65692582462748 27.792412082081636 21.498509169170067 21 21.43723191199988 23.87309629496779 27.843133958062445 26.846537834969887 22 19.739216697305295 27.725156555919234 25.83817199479891 26.69745475197656 23 20.656694166704032 22.42065716121897 35.02873305534383 21.893915616733175 24 21.997320988207864 23.067898190079063 30.681223751662706 24.253557070050366 25 19.401724730604254 29.60784423620141 26.96021835627494 24.030212676919398 26 19.37248725881421 27.442776756490154 27.270060828886994 25.914675155808638 27 21.493745236066896 25.461541048289465 31.3957203066852 21.648993408958436 28 19.25591101346605 24.7337802089405 29.86388228788354 26.146426489709906 29 23.9517478963966 24.668392891838167 28.0352792598903 23.344579951874938 30 25.359723654515836 24.422536579533396 23.43696288989523 26.78077687605554 31 28.372117353420318 25.10433947600472 24.338186940471388 22.185356230103572 32 24.571619662526714 25.78950514878417 26.677931967298868 22.960943221390245 33 19.888766832563633 25.804544231717706 26.38098013720127 27.92570879851739 34 21.07367842891091 23.671983589651617 31.69902404758702 23.555313933850453 35 24.924524353973307 25.725705809382895 26.400783153237978 22.94898668340582 36 22.442982259486765 29.00983051607407 25.94083008264957 22.606357141789594 37 21.642548087701204 28.0101518480324 27.894976759479295 22.4523233047871 38 20.61148350745042 27.681627284819683 26.004909653409857 25.701979554320047 39 25.315914152057275 24.666618093231104 26.747055702521333 23.270412052190288 40 18.36636326951531 22.949173504311826 30.698878327280337 27.985584898892522 41 21.59985951067868 26.74518749346127 23.986683405819846 27.668269590040207 42 22.03561927393923 23.070513682763156 28.01173982573346 26.882127217564154 43 23.608931533874365 25.011489485719412 27.19421154104829 24.185367439357933 44 20.430080407717945 26.528755473852545 26.394711473792764 26.64645264463675 45 21.417989358681194 25.293028591071455 26.703900073233793 26.58508197701356 46 23.40968703761826 23.647883692776755 27.831551061890032 25.110878207714954 47 20.813530317296628 21.974902479487067 32.8054708634115 24.406096339804808 48 20.401777040457937 21.085074504177314 29.238592715479232 29.274555739885518 49 19.94135691760451 23.969962934732248 31.172842965819246 24.915837181843997 50 19.483085235170154 24.591329268110417 29.500702446606585 26.42488305011284 51 20.76178092633278 22.014975563825494 29.24541167854848 27.977831831293248 52 21.90717990105965 21.155599396194834 33.166875906081394 23.770344796664126 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 161.0 1 309.5 2 458.0 3 1596.0 4 2734.0 5 1897.0 6 1060.0 7 1093.0 8 1126.0 9 1114.5 10 1103.0 11 1132.0 12 1161.0 13 1108.5 14 1122.0 15 1188.0 16 1093.5 17 999.0 18 1171.5 19 1344.0 20 1553.0 21 1762.0 22 2082.0 23 2402.0 24 2716.5 25 3031.0 26 4187.5 27 5344.0 28 6451.0 29 7558.0 30 9085.0 31 10612.0 32 12797.0 33 14982.0 34 17548.0 35 20114.0 36 21689.5 37 23265.0 38 25139.5 39 30019.0 40 33024.0 41 42258.0 42 51492.0 43 62825.0 44 74158.0 45 83524.5 46 92891.0 47 104509.0 48 116127.0 49 118066.0 50 120005.0 51 107510.5 52 95016.0 53 84487.5 54 73959.0 55 65727.0 56 57495.0 57 52495.0 58 47495.0 59 46678.5 60 45862.0 61 43472.5 62 41083.0 63 38147.5 64 28221.0 65 21230.0 66 17174.5 67 13119.0 68 10676.5 69 8234.0 70 7120.5 71 6007.0 72 5063.0 73 4119.0 74 3443.5 75 2768.0 76 2232.5 77 1697.0 78 1184.5 79 672.0 80 459.0 81 246.0 82 191.0 83 136.0 84 75.5 85 15.0 86 9.0 87 3.0 88 1.5 89 2.5 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1070544.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.85228973084415 #Duplication Level Percentage of deduplicated Percentage of total 1 70.12195796628372 17.426912158721578 2 12.140365883734713 6.034317807620618 3 4.515002929714839 3.366244828346501 4 2.119851303091389 2.1073263508293882 5 1.230490361118905 1.5290251482769035 6 0.756901591882271 1.128644259551721 7 0.548859932070078 0.9548298237419912 8 0.4299609260233945 0.854841080518036 9 0.3401272579067718 0.760764704297098 >10 7.025754194467518 46.91201794845311 >50 0.6480003308791874 9.910145680897713 >100 0.11064340181038791 4.795155675322946 >500 0.007552450635521259 1.3134944482203628 >1k 0.004153847849536692 2.27956417171139 >5k 3.77622531776063E-4 0.6267159134906819 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 6678 0.623795005156257 No Hit CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTT 4644 0.4337981437474779 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 4019 0.3754166106203949 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 3448 0.32207924195549176 No Hit TGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCTTG 2340 0.21858046002779896 Illumina Single End Adapter 2 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC 1605 0.1499237770703493 No Hit CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC 1554 0.1451598439671793 No Hit TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 1502 0.140302500411006 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1454 0.135818798666846 No Hit GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC 1296 0.12105994709231943 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1293 0.12077971573330942 No Hit AGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC 1135 0.10602086415878283 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4442601144838512 0.0 2 0.0 0.0 0.0 1.6969876997115485 0.0 3 0.0 0.0 0.0 2.6515491189526075 0.0 4 0.0 0.0 0.0 3.2043521798263312 0.0 5 0.0 0.0 0.0 6.164903077313964 0.0 6 0.0 0.0 0.0 6.574414503280575 0.0 7 0.0 0.0 0.0 7.9540868941398015 0.0 8 0.0 0.0 0.0 9.578868313679774 0.0 9 0.0 0.0 0.0 10.611147229819606 0.0 10 0.0 0.0 0.0 11.704142940411604 0.0 11 0.0 0.0 0.0 12.63226920145272 0.0 12 0.0 0.0 0.0 13.428593313306132 0.0 13 0.0 0.0 0.0 13.795322751797217 0.0 14 0.0 0.0 0.0 14.062009595121733 0.0 15 1.8682090600666577E-4 0.0 0.0 14.993685453376974 0.0 16 1.8682090600666577E-4 0.0 0.0 16.015782630139444 0.0 17 1.8682090600666577E-4 0.0 0.0 17.125965864084055 0.0 18 1.8682090600666577E-4 0.0 0.0 17.757980989104606 0.0 19 1.8682090600666577E-4 0.0 0.0 18.386633337817035 0.0 20 1.8682090600666577E-4 0.0 0.0 19.24834476677278 0.0 21 2.8023135900999863E-4 0.0 0.0 19.98965012180723 0.0 22 2.8023135900999863E-4 0.0 0.0 20.821563616254913 0.0 23 2.8023135900999863E-4 0.0 0.0 21.44451792733414 0.0 24 2.8023135900999863E-4 0.0 0.0 21.984150114334394 0.0 25 2.8023135900999863E-4 0.0 0.0 22.505660673452002 0.0 26 2.8023135900999863E-4 0.0 0.0 22.980839647879957 0.0 27 2.8023135900999863E-4 0.0 0.0 23.46573330942026 0.0 28 2.8023135900999863E-4 0.0 0.0 23.961929635773963 0.0 29 2.8023135900999863E-4 0.0 0.0 24.51632067434874 0.0 30 2.8023135900999863E-4 0.0 0.0 25.0616508989822 0.0 31 2.8023135900999863E-4 0.0 0.0 25.536362821145136 0.0 32 2.8023135900999863E-4 0.0 0.0 26.013596825539164 0.0 33 2.8023135900999863E-4 0.0 0.0 26.488402158155107 0.0 34 2.8023135900999863E-4 0.0 0.0 27.050266032970153 0.0 35 2.8023135900999863E-4 0.0 0.0 27.51348846941368 0.0 36 2.8023135900999863E-4 0.0 0.0 28.006882482177286 0.0 37 2.8023135900999863E-4 0.0 0.0 28.464313470534606 0.0 38 2.8023135900999863E-4 0.0 0.0 28.94360250489471 0.0 39 2.8023135900999863E-4 0.0 0.0 29.458480921849077 0.0 40 2.8023135900999863E-4 0.0 0.0 29.973265928350447 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATACG 35 1.019489E-7 46.000004 9 CGAAACG 25 3.416997E-5 46.0 34 CCTGTCG 20 6.311259E-4 46.0 39 ACGGGTA 30 1.8612827E-6 46.0 4 TCATCGG 20 6.311259E-4 46.0 1 ATAACGG 40 5.6115823E-9 46.0 1 CGGTAAG 20 6.311259E-4 46.0 30 CAGACGA 20 6.311259E-4 46.0 41 TACGGGA 240 0.0 44.083332 3 TTACGGG 325 0.0 43.876923 2 GTCCCCC 420 0.0 43.809525 9 TCGAAGG 105 0.0 43.809525 1 CGTAGGG 395 0.0 43.670883 2 TACGGGT 75 0.0 42.93333 3 CGAATAT 145 0.0 42.827583 14 ATTGCGG 210 0.0 42.714287 1 TAACGGG 260 0.0 42.46154 2 CGAGGGT 130 0.0 42.46154 3 ATAGCGG 195 0.0 42.461536 1 TATGCGG 115 0.0 42.0 1 >>END_MODULE