##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544759_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 470920 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.93636286418075 34.0 33.0 34.0 31.0 34.0 2 33.26182578781959 34.0 33.0 34.0 31.0 34.0 3 33.343954387157055 34.0 34.0 34.0 31.0 34.0 4 36.58902148984966 37.0 37.0 37.0 35.0 37.0 5 36.57881168776013 37.0 37.0 37.0 35.0 37.0 6 36.54316656756986 37.0 37.0 37.0 35.0 37.0 7 36.4318589144653 37.0 37.0 37.0 35.0 37.0 8 36.47876497069566 37.0 37.0 37.0 35.0 37.0 9 38.26937484073728 39.0 39.0 39.0 37.0 39.0 10 38.06335258642657 39.0 39.0 39.0 35.0 39.0 11 37.132162575384356 39.0 35.0 39.0 35.0 39.0 12 37.01952348594241 39.0 35.0 39.0 35.0 39.0 13 36.982691327614035 39.0 35.0 39.0 35.0 39.0 14 38.127686231207 40.0 35.0 41.0 35.0 41.0 15 38.221952773294824 40.0 35.0 41.0 35.0 41.0 16 38.262354540049266 40.0 35.0 41.0 35.0 41.0 17 38.3771489849656 40.0 36.0 41.0 35.0 41.0 18 38.357113734816956 40.0 36.0 41.0 35.0 41.0 19 38.24107279368045 40.0 35.0 41.0 35.0 41.0 20 38.144383334749 40.0 35.0 41.0 35.0 41.0 21 38.08113267646309 40.0 35.0 41.0 35.0 41.0 22 38.06795421727682 40.0 35.0 41.0 35.0 41.0 23 38.05455279028285 40.0 35.0 41.0 35.0 41.0 24 38.005654888303745 40.0 35.0 41.0 35.0 41.0 25 37.95937314193493 40.0 35.0 41.0 35.0 41.0 26 37.90946869956681 40.0 35.0 41.0 35.0 41.0 27 37.93773677057674 40.0 35.0 41.0 35.0 41.0 28 37.991748067612335 40.0 35.0 41.0 35.0 41.0 29 38.01594750700756 40.0 35.0 41.0 35.0 41.0 30 37.918708060817124 40.0 35.0 41.0 35.0 41.0 31 37.818368300348254 40.0 35.0 41.0 35.0 41.0 32 37.7650152892211 39.0 35.0 41.0 35.0 41.0 33 37.727452645884654 39.0 35.0 41.0 35.0 41.0 34 37.51629363798522 39.0 35.0 41.0 35.0 41.0 35 37.55494776182791 39.0 35.0 41.0 35.0 41.0 36 37.42809606727257 39.0 35.0 41.0 35.0 41.0 37 37.37733797672641 39.0 35.0 41.0 35.0 41.0 38 37.34172895608596 38.0 35.0 41.0 35.0 41.0 39 37.33507602140491 39.0 35.0 41.0 35.0 41.0 40 37.35106599847108 39.0 35.0 41.0 35.0 41.0 41 37.35071986749342 39.0 35.0 41.0 35.0 41.0 42 37.31711118661344 39.0 35.0 41.0 35.0 41.0 43 37.26800093434129 39.0 35.0 41.0 35.0 41.0 44 37.142096322092925 38.0 35.0 41.0 35.0 41.0 45 37.12810668478723 38.0 35.0 41.0 35.0 41.0 46 37.05180285398794 38.0 35.0 41.0 34.0 41.0 47 37.02846343327954 38.0 35.0 41.0 34.0 41.0 48 37.018034910388174 37.0 35.0 41.0 34.0 41.0 49 36.96720674424531 37.0 35.0 41.0 34.0 41.0 50 36.89686570967468 37.0 35.0 41.0 34.0 41.0 51 36.83060817123928 37.0 35.0 41.0 34.0 41.0 52 36.466741697103544 36.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 2.0 14 0.0 15 10.0 16 11.0 17 15.0 18 29.0 19 66.0 20 100.0 21 201.0 22 308.0 23 505.0 24 805.0 25 1377.0 26 1884.0 27 2183.0 28 2162.0 29 2329.0 30 2748.0 31 3363.0 32 4833.0 33 7546.0 34 26269.0 35 130894.0 36 13963.0 37 20646.0 38 41607.0 39 206363.0 40 698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.37012656077465 21.81389620317676 24.40796738299499 23.408009853053596 2 24.987896033296526 24.9275885500722 27.15939012995838 22.925125286672895 3 26.072368979869193 25.406226110592034 26.845748747133268 21.675656162405506 4 25.38668988363204 26.896288116877603 25.489892126051135 22.227129873439225 5 24.239361250318524 33.95566125881253 21.695617089951586 20.109360400917353 6 85.10702454769388 2.7943175061581584 8.517157903677909 3.5815000424700587 7 86.57330332115858 1.9931198505053938 6.227172343497834 5.206404484838189 8 76.883547099295 3.7484073728021747 12.299328973073981 7.068716554828845 9 53.989000254820354 14.017455194088168 17.182748662193152 14.810795888898326 10 49.37420368640109 16.623205640023784 22.78072708740338 11.221863586171748 11 43.699354455109145 17.488320733882613 22.106514906990572 16.70580990401767 12 18.024929924403295 40.71731928990062 25.99507347320139 15.262677312494692 13 12.093773889407968 43.8458761573091 27.70088337721906 16.359466576063873 14 10.3654548543277 22.9168436252442 50.45634077975028 16.261360740677823 15 10.98615476089357 16.106345026756134 53.407585152467504 19.499915059882785 16 12.307398284209633 19.238511849146352 27.45115943260002 41.002930434043996 17 17.994563832498088 22.35347829780005 35.93243013675359 23.71952773294827 18 25.332965259492056 25.959610974263143 27.50743226025652 21.199991505988276 19 28.952688354709927 21.842988193323706 23.91849995752994 25.28582349443642 20 17.527817888388686 32.262804722670516 27.211415951754013 22.997961437186785 21 18.883462159177782 24.1790537670942 25.689713751804977 31.247770321923046 22 15.669540473965855 32.533338996007814 21.96211670772106 29.83500382230527 23 16.971672470908008 22.278306294062684 40.1834706531895 20.566550581839806 24 16.340567399983012 21.73277839123418 37.04535802259407 24.881296186188738 25 13.260214049095387 34.85815000424701 28.24407542682409 23.637560519833517 26 16.057504459356153 31.1477533338996 27.390214898496563 25.404527308247687 27 17.41399813131742 26.47010107873949 38.13577677737195 17.98012401257114 28 14.085831988448144 23.757963135989126 34.863034060987005 27.293170814575724 29 18.14172258557717 27.274908689373987 27.807058523740764 26.77631020130808 30 29.1820266711968 27.343922534613096 20.41365837084855 23.060392423341543 31 29.534740507941905 23.52098020895269 22.039199864095814 24.9050794190096 32 27.406565871060902 26.820479062261104 22.9701435487981 22.802811517879896 33 19.41922194852629 25.43531810073898 26.43315212774994 28.712307822984794 34 18.787692177015206 22.343710184320052 32.6575639174382 26.211033721226535 35 34.48674934171409 18.980293892805573 24.811220589484414 21.72173617599592 36 23.077592797078058 25.689713751804977 30.30493502081033 20.927758430306636 37 22.78391234179903 28.472351991845752 26.74148475324896 22.002250913106263 38 20.881466066423172 26.475622186358617 28.471077890087486 24.17183385713072 39 28.800433194597808 20.7549052917693 26.503015374161215 23.941646139471672 40 17.332455618788753 18.73757750785696 31.70920750870636 32.22075936464792 41 22.482374925677398 23.896415527053428 23.40439989807186 30.21680964919732 42 23.38571307228404 22.681347150259068 26.828123672810666 27.104816104646222 43 24.123417990316824 26.46266881848297 27.02518474475495 22.388728446445256 44 17.860995498173786 31.58285908434554 24.760893570033126 25.79525184744755 45 23.487004162065745 27.107789008748835 26.096152212690054 23.30905461649537 46 24.50033976046887 20.551686061326766 28.86689883632039 26.08107534188397 47 23.622271298734393 17.389577847617428 33.657309097086554 25.33084175656162 48 20.21511084685297 15.804595260341458 32.35262889662788 31.627664996177696 49 20.449545570372887 24.503737365157562 31.47583453665166 23.570882527817886 50 19.506073218381044 27.243480846003564 27.153231971460123 26.09721396415527 51 20.812664571477107 19.70738129618619 31.578399728191624 27.90155440414508 52 24.715238257028798 18.503992185509215 33.61462668818483 23.16614286927716 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 111.0 1 111.5 2 112.0 3 445.0 4 778.0 5 611.5 6 445.0 7 544.5 8 644.0 9 706.5 10 769.0 11 728.5 12 688.0 13 694.5 14 637.5 15 574.0 16 578.5 17 583.0 18 533.0 19 483.0 20 510.5 21 538.0 22 655.0 23 772.0 24 893.5 25 1015.0 26 1144.0 27 1273.0 28 1610.0 29 1947.0 30 2329.5 31 2712.0 32 3160.5 33 3609.0 34 4401.0 35 5193.0 36 5950.5 37 6708.0 38 7273.5 39 9576.0 40 11313.0 41 17887.5 42 24462.0 43 34193.5 44 43925.0 45 48558.0 46 53191.0 47 51424.5 48 49658.0 49 54964.0 50 60270.0 51 61640.5 52 63011.0 53 53827.0 54 44643.0 55 36049.0 56 27455.0 57 21680.5 58 15906.0 59 14142.5 60 12379.0 61 11063.5 62 9748.0 63 8395.0 64 5575.0 65 4108.0 66 3107.5 67 2107.0 68 1760.0 69 1413.0 70 1223.0 71 1033.0 72 807.5 73 582.0 74 513.5 75 445.0 76 439.5 77 434.0 78 306.5 79 179.0 80 130.5 81 82.0 82 58.5 83 35.0 84 20.0 85 5.0 86 2.5 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 470920.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.569736026012684 #Duplication Level Percentage of deduplicated Percentage of total 1 69.07606697468492 17.662567982578665 2 12.779527818834383 6.535383057293616 3 4.857975384132231 3.7265144457938613 4 2.39731155164691 2.451944941908895 5 1.3755635128021475 1.758639795468282 6 0.8071114127653218 1.2382575460794867 7 0.576792826054132 1.0323908212731403 8 0.41886911577369706 0.8568298175826223 9 0.3349268107581718 0.7707591125208685 >10 6.686056377337726 46.06290979811688 >50 0.5493453256072773 9.395719122083996 >100 0.1313109855460663 5.3413262797661645 >500 0.005817575309002937 1.0695402890814842 >1k 0.003324328748001678 2.09721699045205 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 3651 0.7752909199014695 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCTT 2881 0.6117811942580481 Illumina Single End Adapter 1 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 1964 0.4170559755372462 Illumina Single End Adapter 1 (95% over 21bp) TGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCTTG 1373 0.29155695234859424 Illumina Single End Adapter 1 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 891 0.18920411110167332 Illumina Single End Adapter 1 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 840 0.1783742461564597 No Hit CGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 784 0.16648262974602904 No Hit GCCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 711 0.15098105835386053 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 635 0.13484243608256177 No Hit AGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 631 0.13399303491038816 No Hit ACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 541 0.11488150853648177 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6302556697528242 0.0 2 0.0 0.0 0.0 2.167247090800985 0.0 3 0.0 0.0 0.0 3.3067187632718933 0.0 4 0.0 0.0 0.0 4.011297035589909 0.0 5 0.0 0.0 0.0 7.550751720037374 0.0 6 0.0 0.0 0.0 8.163169965174552 0.0 7 0.0 0.0 0.0 10.664656417225856 0.0 8 0.0 0.0 0.0 13.292703643931029 0.0 9 0.0 0.0 0.0 15.602862481950226 0.0 10 0.0 0.0 0.0 16.864647923214132 0.0 11 0.0 0.0 0.0 18.035547439055467 0.0 12 0.0 0.0 0.0 19.18351312324811 0.0 13 0.0 0.0 0.0 19.573388261275802 0.0 14 0.0 0.0 0.0 19.89955831139047 0.0 15 0.0 0.0 0.0 21.045612842945722 0.0 16 0.0 0.0 0.0 22.192941476259236 0.0 17 0.0 0.0 0.0 23.98772615306209 0.0 18 0.0 0.0 0.0 24.591225685891448 0.0 19 0.0 0.0 0.0 25.340185169455534 0.0 20 0.0 0.0 0.0 26.29363798522042 0.0 21 0.0 0.0 0.0 27.02603414592712 0.0 22 2.123502930434044E-4 0.0 0.0 27.979911662278095 0.0 23 4.247005860868088E-4 0.0 0.0 28.58404824598658 0.0 24 6.370508791302132E-4 0.0 0.0 29.073940372037715 0.0 25 6.370508791302132E-4 0.0 0.0 29.62307822984796 0.0 26 6.370508791302132E-4 0.0 0.0 30.060095132931284 0.0 27 6.370508791302132E-4 0.0 0.0 30.521107619128514 0.0 28 6.370508791302132E-4 0.0 0.0 30.92393612503185 0.0 29 6.370508791302132E-4 0.0 0.0 31.577337976726408 0.0 30 6.370508791302132E-4 0.0 0.0 32.19548967977576 0.0 31 6.370508791302132E-4 0.0 0.0 32.636965939012995 0.0 32 6.370508791302132E-4 0.0 0.0 33.07886689883632 0.0 33 6.370508791302132E-4 0.0 0.0 33.51758260426399 0.0 34 6.370508791302132E-4 0.0 0.0 34.20389875138028 0.0 35 6.370508791302132E-4 0.0 0.0 34.66873354285229 0.0 36 6.370508791302132E-4 0.0 0.0 35.10596279622866 0.0 37 6.370508791302132E-4 0.0 0.0 35.52726577762677 0.0 38 6.370508791302132E-4 0.0 0.0 35.89144653019621 0.0 39 6.370508791302132E-4 0.0 0.0 36.35288371697953 0.0 40 6.370508791302132E-4 0.0 0.0 36.81601970610719 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCACGA 35 1.0178519E-7 46.000004 23 ATTACGG 35 1.0178519E-7 46.000004 1 TCAGGCG 35 1.0178519E-7 46.000004 41 CCGTAGG 35 1.0178519E-7 46.000004 1 CGGGATA 35 1.0178519E-7 46.000004 5 TACTATT 35 1.0178519E-7 46.000004 45 TCACGAC 30 1.8590472E-6 46.0 24 CGGGTAT 115 0.0 46.0 5 CTGTCGG 55 1.8189894E-12 46.0 1 CTCACGG 25 3.414062E-5 46.0 1 GCGACGG 40 5.5988494E-9 46.0 1 GTCGAAT 45 3.092282E-10 46.0 29 CACGGGC 65 0.0 46.0 3 CGACGGT 30 1.8590472E-6 46.0 27 ACTTGAA 20 6.307642E-4 46.0 24 CCCTACG 30 1.8590472E-6 46.0 31 CTATAGG 40 5.5988494E-9 46.0 1 ACTCTTG 20 6.307642E-4 46.0 28 GCTATTC 65 0.0 46.0 38 TAGCGCT 20 6.307642E-4 46.0 2 >>END_MODULE