##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544757_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 497070 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92300078459774 34.0 33.0 34.0 31.0 34.0 2 33.26411974168628 34.0 33.0 34.0 31.0 34.0 3 33.34789667451265 34.0 34.0 34.0 31.0 34.0 4 36.584392540286075 37.0 37.0 37.0 35.0 37.0 5 36.58584505200475 37.0 37.0 37.0 35.0 37.0 6 36.52880881968334 37.0 37.0 37.0 35.0 37.0 7 36.39042589574909 37.0 37.0 37.0 35.0 37.0 8 36.44206650974712 37.0 37.0 37.0 35.0 37.0 9 38.29382984287927 39.0 39.0 39.0 37.0 39.0 10 38.15396020681192 39.0 39.0 39.0 35.0 39.0 11 37.567938117367774 39.0 35.0 39.0 35.0 39.0 12 37.52567847586859 39.0 35.0 39.0 35.0 39.0 13 37.51108495785302 39.0 35.0 39.0 35.0 39.0 14 38.786034160178644 41.0 35.0 41.0 35.0 41.0 15 38.85014786649768 41.0 35.0 41.0 35.0 41.0 16 38.85661576840284 41.0 35.0 41.0 35.0 41.0 17 38.93719798016376 41.0 36.0 41.0 35.0 41.0 18 38.92552356810912 41.0 36.0 41.0 35.0 41.0 19 38.86109602269298 41.0 36.0 41.0 35.0 41.0 20 38.7888245116382 41.0 35.0 41.0 35.0 41.0 21 38.73823203975295 41.0 35.0 41.0 35.0 41.0 22 38.73339167521677 41.0 35.0 41.0 35.0 41.0 23 38.7156356247611 41.0 35.0 41.0 35.0 41.0 24 38.64705977025368 41.0 35.0 41.0 35.0 41.0 25 38.60912949886334 41.0 35.0 41.0 35.0 41.0 26 38.562689359647536 41.0 35.0 41.0 35.0 41.0 27 38.570251674814415 40.0 36.0 41.0 35.0 41.0 28 38.61715854909771 40.0 36.0 41.0 35.0 41.0 29 38.63199549359245 40.0 36.0 41.0 35.0 41.0 30 38.58485927535357 40.0 35.0 41.0 35.0 41.0 31 38.558370048484115 41.0 35.0 41.0 35.0 41.0 32 38.48730963445792 40.0 35.0 41.0 35.0 41.0 33 38.44289134327157 40.0 35.0 41.0 35.0 41.0 34 38.35499024282294 40.0 35.0 41.0 35.0 41.0 35 38.29165308709035 40.0 35.0 41.0 35.0 41.0 36 38.27269398676243 40.0 35.0 41.0 35.0 41.0 37 38.209745106323055 40.0 35.0 41.0 35.0 41.0 38 38.1735791739594 40.0 35.0 41.0 35.0 41.0 39 38.13281429174965 40.0 35.0 41.0 35.0 41.0 40 38.1055565614501 40.0 35.0 41.0 35.0 41.0 41 38.0751664755467 40.0 35.0 41.0 35.0 41.0 42 38.01503409982497 40.0 35.0 41.0 35.0 41.0 43 37.94846399903434 40.0 35.0 41.0 35.0 41.0 44 37.834270827046495 40.0 35.0 41.0 35.0 41.0 45 37.82558190999256 40.0 35.0 41.0 35.0 41.0 46 37.80740740740741 40.0 35.0 41.0 35.0 41.0 47 37.7384774780212 40.0 35.0 41.0 35.0 41.0 48 37.699726396684575 40.0 35.0 41.0 35.0 41.0 49 37.65798579676907 39.0 35.0 41.0 35.0 41.0 50 37.60350654837347 39.0 35.0 41.0 35.0 41.0 51 37.551399199307944 39.0 35.0 41.0 35.0 41.0 52 37.16900838916048 38.0 35.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 2.0 14 2.0 15 3.0 16 7.0 17 18.0 18 29.0 19 54.0 20 86.0 21 147.0 22 213.0 23 433.0 24 693.0 25 1132.0 26 1659.0 27 1821.0 28 1855.0 29 2036.0 30 2522.0 31 3123.0 32 4269.0 33 6461.0 34 19815.0 35 97317.0 36 16221.0 37 25660.0 38 46880.0 39 261067.0 40 3543.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.551692920514213 22.278954674391937 23.827629911280102 22.341722493813748 2 26.624016738085178 24.375842436678937 26.776107992838032 22.224032832397853 3 27.09115416339751 23.94713018287163 26.324260164564343 22.637455489166516 4 25.650713179230287 26.47091958879031 24.67479429456616 23.20357293741324 5 24.05938801376064 34.058180940310216 21.18554730722031 20.696883738708834 6 83.68599995976422 2.9072364053352646 9.365280543987769 4.041483090912749 7 84.89307341018367 2.5445108334842175 6.693021103667491 5.869394652664615 8 73.30718007524091 5.195445309513751 13.195324602168709 8.302050013076629 9 46.98855292011185 21.540024543826824 15.46281207878166 16.00861045727966 10 38.74243064357133 19.321423541955863 28.606836059307543 13.32930975516527 11 36.379383185466835 18.089001549077594 25.60484438811435 19.92677087734122 12 20.180256301929305 31.859295471462772 29.12104934918623 18.83939887742169 13 14.158368036695032 34.67439193674935 30.48323173798459 20.684008288571025 14 12.869213591647052 24.91057597521476 41.982819321222365 20.237391111915827 15 14.736556219445953 19.070352264268614 44.58044138652504 21.612650129760397 16 14.517070030378015 24.038666586195102 28.005914659907056 33.43834872351983 17 17.970104814211275 24.32454181503611 32.427625887701936 25.277727483050676 18 21.439636268533608 28.808014967710786 28.50986782545718 21.242480938298428 19 25.15762367473394 23.02170720421671 26.456233528476876 25.364435592572477 20 18.4865310720824 30.817188725933974 27.7667129378156 22.929567264168025 21 18.731365803609147 24.717041865330838 27.380248254772972 29.171344076287042 22 17.76248818073913 29.293258494779405 23.966845715895147 28.977407608586315 23 18.185165067294346 22.44291548474058 36.95475486350011 22.417164584464967 24 19.467881787273424 22.563622829782524 33.004003460277225 24.964491922666827 25 15.088216951334822 30.698895527792867 29.574707787635546 24.63817973323677 26 16.224676604904744 27.347053734886433 30.32027682217796 26.107992838030864 27 19.714325950067398 25.284366387027983 36.310982356609735 18.690325306294888 28 17.048303055907617 23.975496408956484 32.34393546180618 26.632265073329712 29 18.865753314422516 25.633210614199207 31.992274729917312 23.508761341460964 30 24.49312974027803 25.419156255658155 26.587603355664193 23.500110648399623 31 28.14593518015571 25.061661335425594 24.405415736214213 22.38698774820448 32 21.194600358098455 25.994125575874627 30.82825356589615 21.983020500130763 33 18.789506508137688 26.801255356388438 29.936427464944575 24.472810670529302 34 19.989337517854626 21.70418653308387 32.15985676061722 26.14661918844428 35 24.892671052366868 26.407749411551695 28.428189188645465 20.271390347435975 36 23.339569879493833 26.95716901040095 28.16565071317923 21.537610396925984 37 19.594825678475868 28.986259480556058 28.725933973082263 22.69298086788581 38 20.504154344458527 28.295209930190918 25.0373186875088 26.163317037841754 39 26.464884221538217 23.91192387390106 27.24304423924196 22.380147665318766 40 17.71279699036353 20.530106423642543 33.124308447502365 28.63278813849156 41 22.21095620335164 24.132214778602613 25.454966101353932 28.201862916691816 42 22.010179652765206 20.862051622507895 30.399340133180434 26.72842859154646 43 24.71402418170479 24.829903232945057 28.090208622528014 22.36586396282214 44 17.438388959301506 27.370591667169613 28.763353250045263 26.42766612348361 45 20.173416219043595 26.241776812119017 27.840746776107995 25.744060192729396 46 23.572937413241597 21.633975094051138 28.89653368740821 25.896553805299057 47 20.479610517633333 19.99818938982437 34.91037479630636 24.611825296235942 48 20.763272778481902 18.469632043776528 29.79338926106987 30.973705916671694 49 20.177037439394855 21.98885468847446 33.058925302271305 24.775182569859375 50 19.11843402337699 23.706922566238156 30.372784517271214 26.801858893113646 51 20.01730138612268 19.384794898102882 30.992415555153197 29.605488160621242 52 20.865471663950753 18.610054921841996 35.861347496328484 24.66312591787877 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 108.0 1 157.5 2 207.0 3 740.0 4 1273.0 5 885.0 6 497.0 7 530.5 8 564.0 9 622.5 10 681.0 11 669.0 12 657.0 13 658.5 14 603.5 15 547.0 16 545.0 17 543.0 18 513.5 19 484.0 20 607.0 21 730.0 22 867.0 23 1004.0 24 1041.5 25 1079.0 26 1464.5 27 1850.0 28 2487.0 29 3124.0 30 3587.0 31 4050.0 32 4717.5 33 5385.0 34 6720.5 35 8056.0 36 8390.0 37 8724.0 38 10334.0 39 13522.0 40 15100.0 41 21637.0 42 28174.0 43 39279.0 44 50384.0 45 62714.5 46 75045.0 47 74341.5 48 73638.0 49 62798.5 50 51959.0 51 43430.0 52 34901.0 53 30122.0 54 25343.0 55 21893.5 56 18444.0 57 16940.5 58 15437.0 59 14596.0 60 13755.0 61 13572.5 62 13390.0 63 12005.5 64 8512.0 65 6403.0 66 5148.5 67 3894.0 68 3394.5 69 2895.0 70 2469.0 71 2043.0 72 1830.5 73 1618.0 74 1239.0 75 860.0 76 695.5 77 531.0 78 378.0 79 225.0 80 171.0 81 117.0 82 94.5 83 72.0 84 53.5 85 35.0 86 24.0 87 13.0 88 8.5 89 2.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 497070.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.145039596097956 #Duplication Level Percentage of deduplicated Percentage of total 1 69.34866439865236 20.905182342338843 2 12.270430281624153 7.397852134014389 3 4.542831916308537 4.1083154398661526 4 2.1290760696063478 2.5672432968555188 5 1.2975863617601688 1.955789612730849 6 0.9034867688255647 1.634138665247835 7 0.6069523560449324 1.2807621964143603 8 0.5301115924545251 1.2784187955913762 9 0.5545361717851711 1.5044863370339303 >10 7.497325953992926 43.966125876289034 >50 0.23120662707171175 4.665276594356843 >100 0.07840920396345005 4.543457784050812 >500 0.0053613130915179524 1.1907132138370602 >1k 0.004020984818638464 3.002237711373015 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT 4212 0.8473655621944595 No Hit CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCTT 3788 0.7620657050314844 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT 2436 0.49007182087029993 No Hit TGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCTTG 1906 0.38344699941658117 Illumina Single End Adapter 1 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1466 0.29492827971915425 No Hit ACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 1053 0.21184139054861487 No Hit CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 927 0.18649284808980626 No Hit TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT 917 0.18448105900577383 No Hit GCCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 869 0.17482447140241816 No Hit AGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 761 0.15309714929486792 No Hit ACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT 711 0.14303820387470575 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 628 0.1263403544772366 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 566 0.11386726215623555 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG 515 0.10360713782767014 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7719234715432434 0.0 2 0.0 0.0 0.0 2.4642404490313234 0.0 3 0.0 0.0 0.0 3.7789446154465165 0.0 4 0.0 0.0 0.0 4.614842979861991 0.0 5 0.0 0.0 0.0 8.504637173838695 0.0 6 0.0 0.0 0.0 9.158267447240831 0.0 7 0.0 0.0 0.0 11.698352344740178 0.0 8 0.0 0.0 0.0 14.610618222785524 0.0 9 0.0 0.0 0.0 17.040658257388294 0.0 10 0.0 0.0 0.0 18.575452149596636 0.0 11 0.0 0.0 0.0 20.017703743939485 0.0 12 0.0 0.0 0.0 21.310881767155532 0.0 13 0.0 0.0 0.0 21.806184239644317 0.0 14 0.0 0.0 0.0 22.170921600579394 0.0 15 0.0 0.0 0.0 23.3685396423039 0.0 16 0.0 0.0 0.0 24.679019051642626 0.0 17 0.0 0.0 0.0 26.401512865391194 0.0 18 0.0 0.0 0.0 27.216086265515923 0.0 19 0.0 0.0 0.0 28.12340314241455 0.0 20 0.0 0.0 0.0 29.19407729293661 0.0 21 0.0 0.0 0.0 30.16999617760074 0.0 22 0.0 0.0 0.0 31.1972156839077 0.0 23 0.0 0.0 0.0 31.955660168587926 0.0 24 0.0 0.0 0.0 32.55980043052286 0.0 25 0.0 0.0 0.0 33.180638541855274 0.0 26 0.0 0.0 0.0 33.75259017844569 0.0 27 0.0 0.0 0.0 34.3179029110588 0.0 28 0.0 0.0 0.0 34.877984992053435 0.0 29 0.0 0.0 0.0 35.60866678737401 0.0 30 0.0 0.0 0.0 36.28301848834168 0.0 31 0.0 0.0 0.0 36.842698211519505 0.0 32 0.0 0.0 0.0 37.39976260888808 0.0 33 0.0 0.0 0.0 37.92986903253063 0.0 34 0.0 0.0 0.0 38.661355543484824 0.0 35 0.0 0.0 0.0 39.1747641177299 0.0 36 0.0 0.0 0.0 39.72458607439596 0.0 37 0.0 0.0 0.0 40.27601746232925 0.0 38 0.0 0.0 0.0 40.77976944897097 0.0 39 0.0 0.0 0.0 41.35675055827147 0.0 40 0.0 0.0 0.0 41.94861890679381 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCTG 55 1.8189894E-12 46.000004 1 TGACTAT 55 1.8189894E-12 46.000004 23 GTCATCG 20 6.30798E-4 46.0 43 ACCGGTT 20 6.30798E-4 46.0 13 TTCACGG 25 3.414338E-5 46.0 1 CCGTGAC 20 6.30798E-4 46.0 31 CGCGCCA 25 3.414338E-5 46.0 12 TAAGTGG 20 6.30798E-4 46.0 1 TATGACT 20 6.30798E-4 46.0 27 TGCGCTC 25 3.414338E-5 46.0 23 TACGCGC 20 6.30798E-4 46.0 34 ATGACTA 30 1.8592564E-6 46.0 13 ATGACGG 60 0.0 46.0 1 AAGATTC 20 6.30798E-4 46.0 26 CCAACGG 20 6.30798E-4 46.0 1 TCGCGCC 25 3.414338E-5 46.0 11 TCAACGG 20 6.30798E-4 46.0 1 CCACCGG 25 3.414338E-5 46.0 1 GACTATA 20 6.30798E-4 46.0 8 TCGATGG 35 1.0179974E-7 45.999996 1 >>END_MODULE