##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544755_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 785300 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.89760855723927 34.0 33.0 34.0 31.0 34.0 2 33.23880300522094 34.0 33.0 34.0 31.0 34.0 3 33.329418056793585 34.0 34.0 34.0 31.0 34.0 4 36.57139182478034 37.0 37.0 37.0 35.0 37.0 5 36.57082006876353 37.0 37.0 37.0 35.0 37.0 6 36.50653762893162 37.0 37.0 37.0 35.0 37.0 7 36.371924105437415 37.0 37.0 37.0 35.0 37.0 8 36.42862472940278 37.0 37.0 37.0 35.0 37.0 9 38.28781357443015 39.0 39.0 39.0 37.0 39.0 10 38.130487711702536 39.0 39.0 39.0 35.0 39.0 11 37.46400993250987 39.0 35.0 39.0 35.0 39.0 12 37.40813829109894 39.0 35.0 39.0 35.0 39.0 13 37.394612250095506 39.0 35.0 39.0 35.0 39.0 14 38.64296065198013 41.0 35.0 41.0 35.0 41.0 15 38.70963453457277 41.0 35.0 41.0 35.0 41.0 16 38.7047179421877 41.0 35.0 41.0 35.0 41.0 17 38.775588946899276 41.0 36.0 41.0 35.0 41.0 18 38.78122500955049 41.0 36.0 41.0 35.0 41.0 19 38.71115497262193 41.0 35.0 41.0 35.0 41.0 20 38.6384260792054 41.0 35.0 41.0 35.0 41.0 21 38.58645613141475 41.0 35.0 41.0 35.0 41.0 22 38.56260664714122 41.0 35.0 41.0 35.0 41.0 23 38.519835731567554 40.0 35.0 41.0 35.0 41.0 24 38.46234178021138 40.0 35.0 41.0 35.0 41.0 25 38.421656691710176 40.0 35.0 41.0 35.0 41.0 26 38.33510250859544 40.0 35.0 41.0 35.0 41.0 27 38.317338596714634 40.0 35.0 41.0 35.0 41.0 28 38.29060486438304 40.0 35.0 41.0 35.0 41.0 29 38.335950592130395 40.0 36.0 41.0 35.0 41.0 30 38.30794346109767 40.0 35.0 41.0 35.0 41.0 31 38.167949828091174 40.0 35.0 41.0 35.0 41.0 32 38.20430154081243 40.0 35.0 41.0 35.0 41.0 33 38.109511014898764 40.0 35.0 41.0 35.0 41.0 34 38.00507322042532 40.0 35.0 41.0 35.0 41.0 35 37.94660257226538 40.0 35.0 41.0 35.0 41.0 36 37.95433592257736 40.0 35.0 41.0 35.0 41.0 37 37.940105692092196 40.0 35.0 41.0 35.0 41.0 38 37.879631987775376 40.0 35.0 41.0 35.0 41.0 39 37.87534572774736 40.0 35.0 41.0 35.0 41.0 40 37.85144658092449 40.0 35.0 41.0 35.0 41.0 41 37.80060868457914 40.0 35.0 41.0 35.0 41.0 42 37.71196994779066 40.0 35.0 41.0 35.0 41.0 43 37.59492295937858 39.0 35.0 41.0 35.0 41.0 44 37.49941805679358 39.0 35.0 41.0 35.0 41.0 45 37.49362409270343 39.0 35.0 41.0 35.0 41.0 46 37.44026996052464 39.0 35.0 41.0 35.0 41.0 47 37.3651687253279 39.0 35.0 41.0 35.0 41.0 48 37.31901184260792 39.0 35.0 41.0 35.0 41.0 49 37.28981535718834 39.0 35.0 41.0 35.0 41.0 50 37.21137017700242 38.0 35.0 41.0 35.0 41.0 51 37.139452438558514 38.0 35.0 41.0 34.0 41.0 52 36.73859416783395 37.0 35.0 40.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 3.0 14 7.0 15 11.0 16 20.0 17 29.0 18 67.0 19 114.0 20 167.0 21 317.0 22 460.0 23 716.0 24 1215.0 25 1827.0 26 2641.0 27 3294.0 28 3347.0 29 3628.0 30 4389.0 31 5923.0 32 7384.0 33 10847.0 34 38043.0 35 163698.0 36 28966.0 37 45254.0 38 81826.0 39 379301.0 40 1805.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.006749013116007 21.76735005730294 23.35489621800586 23.871004711575196 2 26.86667515599134 23.835476887813574 27.00420221571374 22.293645740481345 3 27.269578505029923 24.47001146058831 25.97223990831529 22.288170126066472 4 26.22080733477652 26.175219661275946 23.937603463644468 23.66636954030307 5 23.961798038966002 34.44288806825417 20.9579778428626 20.63733604991723 6 83.83012861326881 2.9845918757162866 9.013625366102126 4.171654144912773 7 84.78925251496243 2.676811409652362 6.797784286260028 5.736151789125175 8 73.99032216987139 4.641792945371196 12.942697058449001 8.425187826308417 9 50.55138163759073 18.473704316821596 15.309181204635172 15.6657328409525 10 40.81777664586782 19.50286514707755 25.84986629313638 13.829491913918249 11 38.05577486310964 17.392970839169745 24.11435120336177 20.436903094358843 12 20.963962816757927 31.906914554947154 28.237616197631475 18.89150643066344 13 13.895199286896728 34.02037437921813 30.13205144530753 21.952374888577612 14 13.629058958359863 24.034254425060485 41.830892652489496 20.50579396409016 15 16.109002928817013 17.559531389277982 45.06341525531644 21.268050426588562 16 15.766076658601808 22.800713103272635 27.171781484782887 34.26142875334267 17 18.322424551126957 23.16503247166688 32.62562078186681 25.886922195339363 18 23.70660893925888 27.247421367630203 26.98357315675538 22.062396536355532 19 26.42378708773717 22.09588692219534 25.459314911498794 26.0210110785687 20 20.20781866802496 30.782503501846424 26.959760601044184 22.049917229084425 21 20.32140583216605 24.301795492168598 26.157392079460077 29.21940659620527 22 18.319368394244236 28.602062905895835 23.71488603081625 29.363682669043676 23 18.77027887431555 21.89952884248058 36.95148350948682 22.37870877371705 24 21.06379727492678 21.71526805042659 31.720361645231122 25.500573029415506 25 17.320387113205143 29.733095632242456 27.672991213548965 25.273526041003436 26 19.596841971221192 27.35120336177257 27.47013880045842 25.581815866547814 27 22.576722271743282 24.442506048643832 32.99961798038966 19.981153699223228 28 17.920412581179168 24.258117916719723 31.516363173309564 26.305106328791545 29 23.553164395772317 26.189481726728637 27.780720743664844 22.476633133834202 30 29.063797274926777 23.60066216732459 23.851139691837513 23.484400865911116 31 28.249331465681905 23.086973131287404 26.852413090538647 21.811282312492043 32 27.115369922322678 27.142620654526933 23.17929453711957 22.562714886030815 33 19.964981535718834 23.26830510632879 31.35362281930472 25.413090538647648 34 20.62625748121737 23.26906914554947 33.22042531516618 22.88424805806698 35 25.274544759964346 23.061759837004967 27.406978224882213 24.256717178148477 36 21.394880937221444 29.591621036546545 29.1203361772571 19.893161848974913 37 20.44785432318859 26.08289825544378 30.747485037565266 22.721762383802368 38 18.01133324844009 27.926397555074495 27.620272507322042 26.44199668916338 39 26.297975296065196 23.089265248949445 26.9904495097415 23.622309945243856 40 17.37870877371705 20.444543486565646 32.28447726983318 29.892270469884117 41 21.942824398319114 24.369667642939007 24.835986247294027 28.85152171144785 42 22.47013880045842 21.197886158156116 28.63007767732077 27.70189736406469 43 23.65605501082389 25.46389914682287 28.565771042913536 22.314274799439705 44 19.037947281293775 28.014771424933148 27.91226282949191 25.035018464281166 45 21.756398828473195 24.481726728638737 28.012351967400996 25.749522475487076 46 23.388131924105437 21.173309563224247 29.542849866293135 25.89570864637718 47 20.84286260028015 18.970711829873935 34.62867693874953 25.557748631096395 48 20.293263720871003 18.864510378199416 30.068508850120974 30.773717050808607 49 19.8968547052082 22.093976824143642 32.8491022539157 25.160066216732456 50 19.170635425951865 23.340506812683053 30.367248185406854 27.12160957595823 51 19.705335540557748 19.490385839806443 31.153189863746338 29.65108875588947 52 20.93047243091812 18.424678466827967 35.63427989303451 25.01056920921941 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 193.0 1 254.5 2 316.0 3 1173.0 4 2030.0 5 1399.5 6 769.0 7 851.5 8 934.0 9 994.5 10 1055.0 11 1009.5 12 964.0 13 936.5 14 918.5 15 928.0 16 902.0 17 876.0 18 883.5 19 891.0 20 1233.5 21 1576.0 22 1469.0 23 1362.0 24 1494.0 25 1626.0 26 1869.0 27 2112.0 28 3276.0 29 4440.0 30 4906.0 31 5372.0 32 5556.5 33 5741.0 34 7086.0 35 8431.0 36 9857.5 37 11284.0 38 12974.5 39 17802.0 40 20939.0 41 31380.5 42 41822.0 43 57851.0 44 73880.0 45 92918.5 46 111957.0 47 110673.5 48 109390.0 49 93878.0 50 78366.0 51 68307.0 52 58248.0 53 50756.0 54 43264.0 55 39310.0 56 35356.0 57 32115.5 58 28875.0 59 27800.5 60 26726.0 61 25860.5 62 24995.0 63 23648.0 64 17811.0 65 13321.0 66 11516.0 67 9711.0 68 7993.0 69 6275.0 70 5339.5 71 4404.0 72 3788.5 73 3173.0 74 2834.0 75 2495.0 76 2233.5 77 1972.0 78 1348.0 79 724.0 80 539.5 81 355.0 82 260.0 83 165.0 84 92.0 85 19.0 86 46.0 87 73.0 88 39.5 89 9.0 90 12.0 91 7.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 785300.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.94211433130738 #Duplication Level Percentage of deduplicated Percentage of total 1 68.44057457815123 17.754932106067685 2 12.931239372471733 6.7092738049233045 3 5.147389728058479 4.0060251849927075 4 2.4773644511764896 2.5707228733094825 5 1.3466387765458159 1.7467328552061723 6 0.9121909714873301 1.4198497484586399 7 0.5847879500489194 1.0619445101817957 8 0.44143790829529367 0.9161466149735753 9 0.3844382908427377 0.897582788493723 >10 6.773734625538053 44.19905471323196 >50 0.41140703172151344 7.185393295135474 >100 0.13401522470260924 5.994516866103517 >500 0.008375951543913077 1.4424214340173176 >1k 0.005419733351943756 2.4552479686343514 >5k 9.854060639897739E-4 1.6401552362702898 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 6963 0.886667515599134 No Hit CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCTT 5869 0.7473576976951484 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 3830 0.48771170253406343 No Hit TGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCTTG 2756 0.3509486820323443 Illumina Single End Adapter 2 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 2702 0.34407232904622437 No Hit CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1480 0.18846300776773206 No Hit TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 1477 0.18808098815739208 No Hit ACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1398 0.1780211384184388 No Hit GCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1301 0.16566917101744555 No Hit AGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1122 0.14287533426715904 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1097 0.13969183751432573 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1028 0.1309053864765058 No Hit ACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 1018 0.12963198777537246 No Hit CTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCTTGAAA 942 0.1199541576467592 Illumina Single End Adapter 2 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT 862 0.10976696803769259 No Hit AGGCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT 830 0.10569209219406597 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7649305997707883 0.0 2 0.0 0.0 0.0 2.4901311600662166 0.0 3 0.0 0.0 0.0 3.7271106583471285 0.0 4 0.0 0.0 0.0 4.505666624220043 0.0 5 0.0 0.0 0.0 8.305233668661659 0.0 6 0.0 0.0 0.0 8.94919139182478 0.0 7 0.0 0.0 0.0 11.453839297083917 0.0 8 0.0 0.0 0.0 14.217878517763912 0.0 9 0.0 0.0 0.0 16.420348911244112 0.0 10 0.0 0.0 0.0 17.841079842098562 0.0 11 0.0 0.0 0.0 19.178657837769006 0.0 12 0.0 0.0 0.0 20.40850630332357 0.0 13 1.2733987011333248E-4 0.0 0.0 20.923978097542342 0.0 14 1.2733987011333248E-4 0.0 0.0 21.30714376671336 0.0 15 1.2733987011333248E-4 0.0 0.0 22.464917865783775 0.0 16 1.2733987011333248E-4 0.0 0.0 23.645231121864256 0.0 17 1.2733987011333248E-4 0.0 0.0 25.241054374124538 0.0 18 1.2733987011333248E-4 0.0 0.0 25.995925124156372 0.0 19 1.2733987011333248E-4 0.0 0.0 26.82987393352859 0.0 20 1.2733987011333248E-4 0.0 0.0 27.864001018718962 0.0 21 2.5467974022666496E-4 0.0 0.0 28.721125684451803 0.0 22 2.5467974022666496E-4 0.0 0.0 29.672481854068508 0.0 23 2.5467974022666496E-4 0.0 0.0 30.362918629822996 0.0 24 3.8201961033999744E-4 0.0 0.0 30.958614542213166 0.0 25 3.8201961033999744E-4 0.0 0.0 31.518018591621036 0.0 26 3.8201961033999744E-4 0.0 0.0 32.00305615688272 0.0 27 3.8201961033999744E-4 0.0 0.0 32.49828091175347 0.0 28 5.093594804533299E-4 0.0 0.0 33.01820960142621 0.0 29 5.093594804533299E-4 0.0 0.0 33.65720106965491 0.0 30 5.093594804533299E-4 0.0 0.0 34.269451165159815 0.0 31 5.093594804533299E-4 0.0 0.0 34.81013625366102 0.0 32 5.093594804533299E-4 0.0 0.0 35.30981790398574 0.0 33 5.093594804533299E-4 0.0 0.0 35.84375397937094 0.0 34 5.093594804533299E-4 0.0 0.0 36.530879918502485 0.0 35 7.640392206799949E-4 0.0 0.0 37.01680886285496 0.0 36 7.640392206799949E-4 0.0 0.0 37.54692474213676 0.0 37 8.913790907933274E-4 0.0 0.0 38.009423150388386 0.0 38 8.913790907933274E-4 0.0 0.0 38.52655036291863 0.0 39 8.913790907933274E-4 0.0 0.0 39.063669935056666 0.0 40 0.0010187189609066599 0.0 0.0 39.62396536355533 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGGG 215 0.0 46.0 2 CGACGGT 60 0.0 46.0 27 GCGAATC 20 6.310228E-4 46.0 37 CTATCGG 25 3.416161E-5 46.0 1 CGGTTGA 20 6.310228E-4 46.0 20 CGTTGAA 20 6.310228E-4 46.0 29 TAAACGG 25 3.416161E-5 46.0 1 GTTACGG 50 1.6370905E-11 46.0 1 CCCGTTG 20 6.310228E-4 46.0 27 TTGGTCA 20 6.310228E-4 46.0 23 GCCTATA 20 6.310228E-4 46.0 45 GCGATAG 85 0.0 46.0 8 CCGAAGC 25 3.416161E-5 46.0 27 GGCGATA 150 0.0 46.0 7 CACAACG 30 1.8606443E-6 46.0 11 TGGGACG 20 6.310228E-4 46.0 5 GGTTAAC 25 3.416161E-5 46.0 7 CCGTTGA 20 6.310228E-4 46.0 28 TCAACGG 30 1.8606443E-6 46.0 1 ACGGTCT 60 0.0 46.0 29 >>END_MODULE