##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544751_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1185839 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69849195379811 33.0 31.0 34.0 31.0 34.0 2 33.08833323916653 34.0 33.0 34.0 31.0 34.0 3 33.13522662013983 34.0 33.0 34.0 31.0 34.0 4 36.44443722967452 37.0 37.0 37.0 35.0 37.0 5 36.443908490107006 37.0 37.0 37.0 35.0 37.0 6 36.52266201398335 37.0 37.0 37.0 35.0 37.0 7 36.622606441515245 37.0 37.0 37.0 35.0 37.0 8 36.619455929514885 37.0 37.0 37.0 35.0 37.0 9 38.36419530813205 39.0 39.0 39.0 37.0 39.0 10 38.23755585707672 39.0 39.0 39.0 37.0 39.0 11 38.004100050681416 39.0 38.0 39.0 35.0 39.0 12 37.20060227400178 39.0 35.0 39.0 35.0 39.0 13 37.06841822540834 39.0 35.0 39.0 35.0 39.0 14 38.17047761121029 40.0 35.0 41.0 35.0 41.0 15 38.21366306893263 40.0 35.0 41.0 35.0 41.0 16 38.285846560958106 40.0 35.0 41.0 35.0 41.0 17 38.27212378746187 40.0 35.0 41.0 35.0 41.0 18 38.317003404340724 40.0 36.0 41.0 35.0 41.0 19 38.288034885005466 40.0 36.0 41.0 35.0 41.0 20 38.13991444032453 40.0 35.0 41.0 35.0 41.0 21 38.05363375635309 40.0 35.0 41.0 35.0 41.0 22 37.975780860639595 40.0 35.0 41.0 35.0 41.0 23 37.924930787400314 40.0 35.0 41.0 35.0 41.0 24 37.882305270782965 40.0 35.0 41.0 35.0 41.0 25 37.880724955074 40.0 35.0 41.0 35.0 41.0 26 37.82597047322613 40.0 35.0 41.0 35.0 41.0 27 37.79376542684125 40.0 35.0 41.0 35.0 41.0 28 37.806757915703564 40.0 35.0 41.0 35.0 41.0 29 37.78956502526903 40.0 35.0 41.0 35.0 41.0 30 37.75734058333383 40.0 35.0 41.0 35.0 41.0 31 37.610205938580194 40.0 35.0 41.0 35.0 41.0 32 37.49411429376163 40.0 35.0 41.0 34.0 41.0 33 37.36797828372992 40.0 35.0 41.0 34.0 41.0 34 37.24166771374529 39.0 35.0 41.0 34.0 41.0 35 37.11440760507961 39.0 35.0 41.0 34.0 41.0 36 37.0454496774014 39.0 35.0 41.0 34.0 41.0 37 37.000492478321256 39.0 35.0 41.0 34.0 41.0 38 36.90440607873413 39.0 35.0 41.0 33.0 41.0 39 36.91710847762639 39.0 35.0 41.0 33.0 41.0 40 36.81493524837689 39.0 35.0 41.0 33.0 41.0 41 36.81388367223544 39.0 35.0 41.0 33.0 41.0 42 36.81243322238517 39.0 35.0 41.0 33.0 41.0 43 36.76030219953974 39.0 35.0 41.0 33.0 41.0 44 36.674124396313495 39.0 35.0 41.0 33.0 41.0 45 36.59921456454038 38.0 35.0 41.0 33.0 41.0 46 36.54998865781948 38.0 35.0 41.0 33.0 41.0 47 36.488547770818805 38.0 35.0 41.0 33.0 41.0 48 36.44218987569139 38.0 35.0 41.0 33.0 41.0 49 36.45261877877182 38.0 35.0 41.0 33.0 41.0 50 36.31434537066161 38.0 35.0 40.0 33.0 41.0 51 36.24485448699191 37.0 35.0 40.0 33.0 41.0 52 36.03410834017097 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 3.0 12 4.0 13 8.0 14 8.0 15 14.0 16 30.0 17 66.0 18 151.0 19 313.0 20 534.0 21 883.0 22 1515.0 23 2497.0 24 4052.0 25 6612.0 26 8687.0 27 9658.0 28 9759.0 29 9748.0 30 11187.0 31 12999.0 32 16493.0 33 23450.0 34 61961.0 35 280055.0 36 43858.0 37 54714.0 38 109020.0 39 515673.0 40 1886.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.075789377816044 23.039974229216615 29.596091880938307 13.288144512029035 2 30.36078253455992 26.181041439858195 30.389538546126417 13.068637479455475 3 29.384343068494122 25.061580872276927 31.46261844989075 14.091457609338198 4 25.675492204253697 28.559273223430836 30.538125327299916 15.227109245015555 5 21.981061510036355 34.49970864510275 28.68627191380955 14.83295793105135 6 21.133054318503607 43.56375528212514 25.203084061158386 10.10010633821286 7 87.76123908894884 4.785388235671116 5.63550363919554 1.8178690361845071 8 88.32033690914196 3.614318638533561 5.9017286495046966 2.1636158028197756 9 84.88707151645374 4.747356091341236 7.5371951841691835 2.8283772080358296 10 50.723411862824555 26.48403366730222 12.69944739547274 10.09310707440049 11 43.53904703758268 20.97797424439574 23.11814672986805 12.364831988153535 12 41.91462753375458 20.55270572143436 24.534021903479307 12.99864484133175 13 19.55982220183347 42.150494291383566 24.95423071766066 13.335452789122302 14 14.895613991444032 45.08571568315766 26.731790740564275 13.286879584834029 15 12.87248943574971 24.92800456048418 49.640971497817155 12.558534505948954 16 14.361140087313709 20.612663270477697 48.27172997346183 16.75446666874677 17 14.509979853926207 19.6426327688666 30.04075595422313 35.80663142298406 18 18.42518250791212 23.131807943574128 39.43553888850004 19.007470660013713 19 27.753177286292658 23.643513158194324 29.170570372537924 19.43273918297509 20 30.484408085751944 22.835140352105135 28.69858387184095 17.98186769030197 21 20.16842083959121 30.3572407384139 31.494157301286265 17.98018112070863 22 20.28749265288121 23.46456812434066 27.26685494405227 28.981084278725866 23 16.590110461875515 31.319513019895616 27.67129433253587 24.419082185693 24 16.17023896161283 23.07370562108347 43.64858973267028 17.10746568463341 25 14.390486398237872 26.33325434565738 40.08722937936769 19.189029876737063 26 14.999000707515945 36.04991908682376 28.557670982317163 20.393409223343134 27 15.052886606023247 38.46070166354792 28.89043116308369 17.595980567345144 28 13.111307690167045 30.4101146951652 40.109239112560815 16.36933850210695 29 13.99093806157497 25.066724909536624 38.59731380060868 22.345023228279725 30 17.26726815360264 34.28922475985357 31.296238359507488 17.147268727036302 31 28.288241489780653 28.696391331369604 26.91090443137728 16.104462747472464 32 29.91080576705607 25.438782161828037 28.394748359600246 16.255663711515645 33 29.30836310831403 28.43219020457246 25.128284699693637 17.131161987419876 34 19.12780740049872 27.97909328332092 27.02963893074861 25.863460385431747 35 17.9928303926587 26.427280600486235 33.72026050753939 21.859628499315676 36 30.859163849392708 25.055087579342562 27.22410040486103 16.861648166403704 37 18.026646113005224 35.61630204437533 31.419020625902842 14.938031216716603 38 17.476655768616144 35.142797631044346 27.035373267365976 20.34517333297353 39 19.400947346140583 35.61604905893633 27.952529812225773 17.030473782697314 40 25.456575471037805 25.43380678152768 27.923605143699948 21.18601260373457 41 15.280067530246516 25.020344245719695 30.42048709816425 29.279101125869534 42 19.84358753591339 24.08539439165013 27.962733558265494 28.10828451417098 43 19.39327345449087 25.365838026915966 29.282980235934218 25.95790828265894 44 16.43022366442662 30.129300857873627 32.75107329072496 20.689402186974792 45 16.388312410032054 40.12736973568924 24.25464165034208 19.22967620393662 46 20.157964108112484 34.747381389885135 27.35497820530443 17.73967629669795 47 18.455625089071955 29.160788268896535 28.326695276508868 24.056891365522638 48 20.060986356495274 25.65567501153192 34.80632699717246 19.47701163480034 49 20.905704737321003 25.47791057639359 35.034857177070414 18.581527509214997 50 18.928117560646935 35.44722344264272 28.016703785252467 17.607955211457877 51 17.49925580116694 34.186765657058 26.364371554654554 21.94960698712051 52 18.787541985041813 26.477034403489853 36.46161072455873 18.273812886909603 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4581.0 1 4199.0 2 3817.0 3 5940.0 4 8063.0 5 5659.5 6 3256.0 7 3503.5 8 3751.0 9 3815.5 10 3880.0 11 3823.0 12 3766.0 13 3767.0 14 3708.0 15 3648.0 16 3664.5 17 3681.0 18 3818.5 19 3956.0 20 4450.5 21 4945.0 22 6102.5 23 7260.0 24 7908.0 25 8556.0 26 9921.0 27 11286.0 28 15438.5 29 19591.0 30 22073.5 31 24556.0 32 25698.0 33 26840.0 34 32580.5 35 38321.0 36 43267.0 37 48213.0 38 56026.0 39 72517.5 40 81196.0 41 104012.5 42 126829.0 43 135760.5 44 144692.0 45 136138.0 46 127584.0 47 114113.0 48 100642.0 49 91374.0 50 82106.0 51 72544.0 52 62982.0 53 55292.0 54 47602.0 55 40548.0 56 33494.0 57 28502.5 58 23511.0 59 20623.5 60 17736.0 61 15484.0 62 13232.0 63 11222.5 64 7716.0 65 6219.0 66 4687.5 67 3156.0 68 2618.5 69 2081.0 70 1661.5 71 1242.0 72 1196.5 73 1151.0 74 873.5 75 596.0 76 525.0 77 454.0 78 373.0 79 292.0 80 227.5 81 163.0 82 117.0 83 71.0 84 43.0 85 15.0 86 8.0 87 1.0 88 2.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1185839.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.186738763616763 #Duplication Level Percentage of deduplicated Percentage of total 1 75.46801942884504 12.215811155022688 2 10.389267773482397 3.3633672678924387 3 3.606556259929193 1.751351520472817 4 1.7648352840378436 1.1426771081413585 5 1.003172373876751 0.811904457541013 6 0.6666741588350575 0.6474768269710214 7 0.44511119539451127 0.5043429048428492 8 0.33463503577841386 0.4333319924238988 9 0.2596239249985079 0.37822181856621107 >10 3.3493487188549107 13.09068065148534 >50 1.084053930330563 12.39825197836534 >100 1.6192662431291034 51.48392440735097 >500 0.006814652366681238 0.6807638784153961 >1k 0.0026210201410312457 1.097894032508639 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4368 0.3683467991860615 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4054 0.34186765657058 No Hit CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCTT 1772 0.14943006597016967 Illumina Paired End PCR Primer 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT 1484 0.12514346382603372 TruSeq Adapter, Index 22 (95% over 23bp) GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1261 0.1063382128602618 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15626067282320788 0.0 2 0.0 0.0 0.0 0.4584939439502327 0.0 3 8.432847966713862E-5 0.0 0.0 0.6001657897910256 0.0 4 8.432847966713862E-5 0.0 0.0 0.7716055889543184 0.0 5 8.432847966713862E-5 0.0 0.0 1.2631562969340695 0.0 6 8.432847966713862E-5 0.0 0.0 1.6210463646414057 0.0 7 8.432847966713862E-5 0.0 0.0 1.879766140260187 0.0 8 8.432847966713862E-5 0.0 0.0 2.4439236692333446 0.0 9 8.432847966713862E-5 0.0 0.0 2.650444115938167 0.0 10 8.432847966713862E-5 0.0 0.0 3.0575820157711124 0.0 11 8.432847966713862E-5 0.0 0.0 3.585899940885736 0.0 12 8.432847966713862E-5 0.0 0.0 4.004422185473745 0.0 13 8.432847966713862E-5 0.0 0.0 4.1599239019799485 0.0 14 8.432847966713862E-5 0.0 0.0 4.211111289137902 0.0 15 8.432847966713862E-5 0.0 0.0 4.312221136258801 0.0 16 8.432847966713862E-5 0.0 0.0 4.5462326673351106 0.0 17 8.432847966713862E-5 0.0 0.0 4.8129636485222695 0.0 18 8.432847966713862E-5 0.0 0.0 5.195899274690746 0.0 19 1.6865695933427724E-4 0.0 0.0 5.365315190342028 0.0 20 1.6865695933427724E-4 0.0 0.0 5.5376826027816595 0.0 21 6.74627837337109E-4 0.0 0.0 5.7793680255076785 0.0 22 6.74627837337109E-4 0.0 0.0 6.018017622965681 0.0 23 6.74627837337109E-4 0.0 0.0 6.329358369896757 0.0 24 7.589563170042476E-4 0.0 0.0 6.542793751934284 0.0 25 7.589563170042476E-4 0.0 0.0 6.710270112553222 0.0 26 7.589563170042476E-4 0.0 0.0 6.886516635057542 0.0 27 7.589563170042476E-4 0.0 0.0 7.055173594391818 0.0 28 7.589563170042476E-4 0.0 0.0 7.245755958439552 0.0 29 7.589563170042476E-4 0.0 0.0 7.427399503642569 0.0 30 7.589563170042476E-4 0.0 0.0 7.673638664270613 0.0 31 7.589563170042476E-4 0.0 0.0 7.903096457444898 0.0 32 7.589563170042476E-4 0.0 0.0 8.09899151571166 0.0 33 7.589563170042476E-4 0.0 0.0 8.2967418005311 0.0 34 7.589563170042476E-4 0.0 0.0 8.492552530318196 0.0 35 7.589563170042476E-4 0.0 0.0 8.770752184740086 0.0 36 8.432847966713862E-4 0.0 0.0 8.991186830589987 0.0 37 8.432847966713862E-4 0.0 0.0 9.21330804603323 0.0 38 8.432847966713862E-4 0.0 0.0 9.426912085030093 0.0 39 9.276132763385249E-4 0.0 0.0 9.637311641799604 0.0 40 9.276132763385249E-4 0.0 0.0 9.863733609705871 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTCA 35 1.0195981E-7 46.000004 6 CGTTGTA 35 1.0195981E-7 46.000004 46 CGTCTCG 35 1.0195981E-7 46.000004 29 GTTAGCG 35 1.0195981E-7 46.000004 1 ACGATAT 35 1.0195981E-7 46.000004 34 GGACGAT 35 1.0195981E-7 46.000004 8 AGTTCGG 35 1.0195981E-7 46.000004 2 TTACGTT 35 1.0195981E-7 46.000004 14 CATCGAT 35 1.0195981E-7 46.000004 10 TTACCCG 35 1.0195981E-7 46.000004 21 CAATCGT 35 1.0195981E-7 46.000004 42 GCATCGA 35 1.0195981E-7 46.000004 9 GCCCCGC 25 3.417222E-5 46.0 28 AGCGTTA 30 1.8614537E-6 46.0 11 CGGAATA 20 6.3115364E-4 46.0 16 CTATGCG 45 3.092282E-10 46.0 1 CGGCGAA 45 3.092282E-10 46.0 6 AATCCGG 25 3.417222E-5 46.0 2 CAAACGA 20 6.3115364E-4 46.0 29 CGAACCC 20 6.3115364E-4 46.0 29 >>END_MODULE