SRR1544740_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544740_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	925601
Sequences flagged as poor quality	0
Sequence length	52
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4410	0.4764471948496166	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3805	0.41108425768770773	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1743	0.1883100817738961	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCTT	1471	0.1589237695292032	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	1296	0.14001713481294856	Illumina Single End Adapter 1 (95% over 21bp)
TTTTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT	953	0.10296013076908948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGT	20	6.3108135E-4	46.000004	18
CCTTACA	20	6.3108135E-4	46.000004	16
TCGTTCC	40	5.6097633E-9	46.000004	19
GTACCGA	20	6.3108135E-4	46.000004	11
TACCCAC	40	5.6097633E-9	46.000004	20
GCGACGG	40	5.6097633E-9	46.000004	2
ATCTAGA	20	6.3108135E-4	46.000004	14
CGACGGT	20	6.3108135E-4	46.000004	28
ACGCAGA	20	6.3108135E-4	46.000004	42
AACCCGT	40	5.6097633E-9	46.000004	43
GGCGTAT	40	5.6097633E-9	46.000004	11
GGCGTAG	105	0.0	46.000004	1
GATCCGA	20	6.3108135E-4	46.000004	27
CACGCTT	40	5.6097633E-9	46.000004	42
CAACCGA	20	6.3108135E-4	46.000004	38
TTGTACG	20	6.3108135E-4	46.000004	1
AGGCGTA	40	5.6097633E-9	46.000004	10
ATATGCG	40	5.6097633E-9	46.000004	1
TAACGCG	40	5.6097633E-9	46.000004	1
ACGGGTA	40	5.6097633E-9	46.000004	5