SRR1544739_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1544739_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1154458
Sequences flagged as poor quality	0
Sequence length	52
%GC	43

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7950	0.6886348398988963	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4333	0.3753276429285431	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCTT	2692	0.23318301748526146	Illumina Single End Adapter 2 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2459	0.21300038632847623	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	2239	0.19394382472121116	Illumina Single End Adapter 2 (95% over 21bp)
GTTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT	1408	0.12196199428649636	No Hit
AAAACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	1375	0.11910351004540659	No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	1312	0.1136464037669625	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.092282E-10	46.000004	25
ATTACTA	45	3.092282E-10	46.000004	28
CACGCAC	45	3.092282E-10	46.000004	45
ATTCGCG	90	0.0	46.000004	1
CAATTAC	45	3.092282E-10	46.000004	26
TAAGTAC	45	3.092282E-10	46.000004	24
CACGACG	45	3.092282E-10	46.000004	26
GTTACCA	45	3.092282E-10	46.000004	12
CGTAATA	45	3.092282E-10	46.000004	33
CGGTCTA	45	3.092282E-10	46.000004	31
GAACCAC	45	3.092282E-10	46.000004	38
GTAAGTA	45	3.092282E-10	46.000004	23
ATACGAG	45	3.092282E-10	46.000004	1
TGCAGAT	45	3.092282E-10	46.000004	40
TCACGGT	20	6.3114666E-4	46.0	33
CCTTCGC	50	1.6370905E-11	46.0	27
GTTTGCG	60	0.0	46.0	1
CTTCGCA	20	6.3114666E-4	46.0	14
AAGTATG	80	0.0	46.0	1
AGCGTAT	30	1.86141E-6	46.0	33