##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1544736_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2240043 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.698362486791545 33.0 31.0 34.0 31.0 34.0 2 33.12719041554113 34.0 33.0 34.0 31.0 34.0 3 33.17002084334988 34.0 33.0 34.0 31.0 34.0 4 36.488584370925025 37.0 37.0 37.0 35.0 37.0 5 36.485034439071036 37.0 37.0 37.0 35.0 37.0 6 36.55094299529072 37.0 37.0 37.0 35.0 37.0 7 36.63864443673626 37.0 37.0 37.0 35.0 37.0 8 36.62816249509496 37.0 37.0 37.0 35.0 37.0 9 38.3150506485813 39.0 39.0 39.0 37.0 39.0 10 38.2118530760347 39.0 39.0 39.0 37.0 39.0 11 38.12336950674607 39.0 39.0 39.0 35.0 39.0 12 37.65560125408307 39.0 37.0 39.0 35.0 39.0 13 37.55737233615605 39.0 37.0 39.0 35.0 39.0 14 38.833515695904055 41.0 38.0 41.0 35.0 41.0 15 38.84292935448114 41.0 37.0 41.0 35.0 41.0 16 38.8824625241569 41.0 37.0 41.0 35.0 41.0 17 38.858869673483944 41.0 37.0 41.0 35.0 41.0 18 38.8665748827143 40.0 37.0 41.0 35.0 41.0 19 38.86369815222297 41.0 37.0 41.0 35.0 41.0 20 38.75917649795115 41.0 36.0 41.0 35.0 41.0 21 38.70085127830136 41.0 36.0 41.0 35.0 41.0 22 38.622110379131115 40.0 35.0 41.0 35.0 41.0 23 38.541100773511936 40.0 35.0 41.0 35.0 41.0 24 38.496885550857726 40.0 35.0 41.0 35.0 41.0 25 38.51537046387056 40.0 35.0 41.0 35.0 41.0 26 38.47285431574305 40.0 35.0 41.0 35.0 41.0 27 38.459085383628796 40.0 35.0 41.0 35.0 41.0 28 38.40729575280474 40.0 36.0 41.0 35.0 41.0 29 38.37797801202923 40.0 36.0 41.0 35.0 41.0 30 38.329780722959335 40.0 36.0 41.0 35.0 41.0 31 38.248364875138556 40.0 36.0 41.0 35.0 41.0 32 38.142708421222274 40.0 35.0 41.0 35.0 41.0 33 38.03612475296233 40.0 35.0 41.0 35.0 41.0 34 37.91470699446395 40.0 35.0 41.0 35.0 41.0 35 37.79204729552067 40.0 35.0 41.0 34.0 41.0 36 37.72917618099295 40.0 35.0 41.0 34.0 41.0 37 37.693082677430745 40.0 35.0 41.0 34.0 41.0 38 37.581202235849936 40.0 35.0 41.0 34.0 41.0 39 37.58516108842554 40.0 35.0 41.0 34.0 41.0 40 37.535638378370415 40.0 35.0 41.0 34.0 41.0 41 37.49917479262675 40.0 35.0 41.0 34.0 41.0 42 37.48436302338839 40.0 35.0 41.0 34.0 41.0 43 37.429827909553524 40.0 35.0 41.0 34.0 41.0 44 37.351376736964426 40.0 35.0 41.0 34.0 41.0 45 37.27569604690624 40.0 35.0 41.0 34.0 41.0 46 37.2283505271997 40.0 35.0 41.0 34.0 41.0 47 37.180101006989595 40.0 35.0 41.0 34.0 41.0 48 37.10566940009634 40.0 35.0 41.0 33.0 41.0 49 37.05821629316937 39.0 35.0 41.0 33.0 41.0 50 36.95333169943613 39.0 35.0 41.0 33.0 41.0 51 36.90593171648937 39.0 35.0 41.0 33.0 41.0 52 36.704539600355886 39.0 35.0 41.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 4.0 12 1.0 13 7.0 14 8.0 15 25.0 16 50.0 17 101.0 18 243.0 19 484.0 20 934.0 21 1516.0 22 2390.0 23 3827.0 24 6235.0 25 10006.0 26 13876.0 27 16481.0 28 16270.0 29 16902.0 30 18519.0 31 21821.0 32 27460.0 33 38083.0 34 91005.0 35 343256.0 36 88047.0 37 114848.0 38 236900.0 39 1166788.0 40 3953.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.581383482370654 24.03976173671666 29.416176385899735 13.962678395012954 2 30.373747289672565 25.319424671758533 30.63284945869343 13.673978579875476 3 29.363275615691304 25.536741928614763 31.578411664418944 13.52157079127499 4 25.955394606264253 28.305349495523075 31.18949055888659 14.549765339326076 5 23.588386472938243 33.27195058309149 28.874043935763734 14.26561900820654 6 21.71596705956091 42.891899842994086 24.555912542750296 10.836220554694709 7 88.63561994122435 3.5390838479439903 5.965689051504815 1.8596071593268524 8 88.69700269146618 3.322346937090047 5.90796694527739 2.072683426166373 9 83.34161442436596 5.923011299336665 7.512043295597451 3.223330980699924 10 37.51119956179413 35.80891081108711 14.347537078529296 12.33235254858947 11 35.50052387387206 23.991726944527404 25.693301423231606 14.814447758368923 12 35.6254321903642 22.398900378251668 26.800244459592964 15.175422971791166 13 22.311625267907804 33.429983263714135 27.69237019110794 16.566021277270124 14 16.306561972247856 36.809025541027566 29.647734440812073 17.236678045912512 15 16.27598220212737 27.786921947480476 41.190727142291465 14.746368708100693 16 18.792273184041555 23.11531519707434 40.586363743910276 17.50604787497383 17 18.358174374331206 23.552003242794893 30.582582566495375 27.507239816378526 18 19.187979873600643 25.01563586056161 35.981005721765165 19.815378544072594 19 24.543100288699815 26.060303306677596 29.912907921856856 19.483688482765732 20 26.465474100273966 25.003180742512534 30.22477693508562 18.30656822212788 21 22.546710040834036 27.584916896684575 31.087394304484334 18.780978757997055 22 20.87942061826492 24.24524886352628 29.2627418312952 25.6125886869136 23 18.119696809391606 29.67072507090266 29.074307948552775 23.135270171152964 24 16.92021090666563 25.601963890871737 39.19719398243694 18.280631220025686 25 17.22774964587733 28.368473283771785 34.548801072122274 19.854975998228603 26 17.34810447835153 33.28458426914126 29.70871541305234 19.65859583945487 27 17.025030323078617 34.517328461998275 29.865632043670594 18.592009171252517 28 15.265019466144178 30.16678697685714 36.111672856279995 18.45652070071869 29 17.151054689575155 25.79035313161399 34.34246574730931 22.716126431501536 30 17.842023568297574 32.41562773571757 31.827335457399702 17.915013238585153 31 24.3290865398566 29.636573940768102 28.190708839071394 17.843630680303903 32 24.78849736366668 27.47058873423412 30.108618450627954 17.632295451471244 33 24.963627930356694 28.72083259116008 27.340546587721754 18.97499289076147 34 19.083562235189238 28.37494637379729 29.25484019726407 23.286651193749407 35 19.51346469688305 27.12425609686957 32.81021837527226 20.55206083097512 36 25.26741674155362 28.756456907300443 28.435793420037026 17.540332931108914 37 18.50388586290531 33.601185334388674 30.463566994026454 17.431361808679565 38 19.36828891231106 31.957868665914003 28.622039844770836 20.051802577004104 39 19.107624273284042 32.282549933193245 29.49050531619259 19.119320477330124 40 22.174842179368877 26.717210339265808 30.645259934742324 20.46268754662299 41 17.492610632920886 27.60143443674965 30.28633825332817 24.61961667700129 42 19.333914572175622 27.252601847375253 29.013862680314617 24.399620900134504 43 19.008027970891632 26.54029409256876 30.363301061631404 24.088376874908203 44 17.692026447706585 28.93252495599415 31.609616422541887 21.765832173757378 45 16.986548918927003 35.95547049766456 27.10465825879235 19.953322324616092 46 19.179810387568452 33.284003923138975 28.94663182804973 18.58955386124284 47 19.19431903762562 29.144083394827693 29.24961708324349 22.411980484303204 48 19.532392904957625 27.234745047304898 33.63904175053782 19.593820297199652 49 20.52411493886501 26.155346125052066 33.8860905795112 19.434448356571725 50 18.357906522330154 31.774836465192855 30.98436056807838 18.88289644439861 51 17.857425058358256 30.89364802372097 29.753312771228053 21.49561414669272 52 18.28255082603325 27.758886771370012 35.338607339234116 18.61995506336262 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4919.0 1 5286.0 2 5653.0 3 11772.5 4 17892.0 5 11995.0 6 6098.0 7 6333.0 8 6568.0 9 6655.0 10 6742.0 11 6997.0 12 7252.0 13 7153.5 14 6881.0 15 6707.0 16 6384.0 17 6061.0 18 6325.5 19 6590.0 20 8001.0 21 9412.0 22 11314.5 23 13217.0 24 16358.5 25 19500.0 26 22296.0 27 25092.0 28 32732.0 29 40372.0 30 48403.5 31 56435.0 32 62993.5 33 69552.0 34 82718.0 35 95884.0 36 102871.0 37 109858.0 38 115634.5 39 140343.0 40 159275.0 41 186778.0 42 214281.0 43 218931.0 44 223581.0 45 222431.0 46 221281.0 47 206872.0 48 192463.0 49 170391.5 50 148320.0 51 131601.5 52 114883.0 53 98788.0 54 82693.0 55 72394.0 56 62095.0 57 55105.0 58 48115.0 59 44105.0 60 40095.0 61 34409.0 62 28723.0 63 25152.5 64 18089.0 65 14596.0 66 12359.0 67 10122.0 68 8087.5 69 6053.0 70 4886.5 71 3720.0 72 3185.0 73 2650.0 74 2137.0 75 1624.0 76 1187.0 77 750.0 78 564.5 79 379.0 80 324.5 81 270.0 82 193.5 83 117.0 84 96.5 85 76.0 86 49.0 87 22.0 88 13.0 89 2.0 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2240043.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.545592894597426 #Duplication Level Percentage of deduplicated Percentage of total 1 74.96650418328919 10.904322505812592 2 10.218535709698372 2.9726932082435744 3 3.5270632710211567 1.5390967936128268 4 1.718603836573334 0.9999244701555585 5 1.0290743270989438 0.7484248110131511 6 0.6747829541227788 0.5889070885730251 7 0.48711697088140776 0.49597836053432975 8 0.3814662270885567 0.44389219538145586 9 0.32431754069681173 0.42456518239975705 >10 3.7853874944206973 13.248017135103762 >50 1.1367435698148345 11.740109206480119 >100 1.7318549511616537 53.34813767023837 >500 0.016694067719121467 1.5850184399768614 >1k 0.0015457470110297653 0.5116415061863575 >5k 3.091494022059531E-4 0.4492714262882666 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9991 0.4460182237573118 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4167 0.18602321473293146 No Hit CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCTT 2481 0.11075680243638181 TruSeq Adapter, Index 23 (96% over 27bp) CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCT 2384 0.10642652841932052 Illumina PCR Primer Index 7 (95% over 24bp) >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11580134845625731 0.0 2 0.0 0.0 0.0 0.34807367537141026 0.0 3 0.0 0.0 0.0 0.47441053586917753 0.0 4 0.0 0.0 0.0 0.6347199585007967 0.0 5 0.0 0.0 0.0 1.0463192001224977 0.0 6 0.0 0.0 0.0 1.346268799304299 0.0 7 0.0 0.0 0.0 1.5465328120933393 0.0 8 0.0 0.0 0.0 1.9858547358242677 0.0 9 0.0 0.0 0.0 2.141342822436891 0.0 10 0.0 0.0 0.0 2.477273873760459 0.0 11 0.0 0.0 0.0 2.910211991466235 0.0 12 0.0 0.0 0.0 3.2535982568191772 0.0 13 0.0 0.0 0.0 3.3814083033227487 0.0 14 4.464200017588948E-5 0.0 0.0 3.4263627974998694 0.0 15 4.464200017588948E-5 0.0 0.0 3.5183699598623774 0.0 16 4.464200017588948E-5 0.0 0.0 3.7082323866104354 0.0 17 4.464200017588948E-5 0.0 0.0 3.949968817562877 0.0 18 4.464200017588948E-5 0.0 0.0 4.251793380752066 0.0 19 4.464200017588948E-5 0.0 0.0 4.405852923359061 0.0 20 4.464200017588948E-5 0.0 0.0 4.589867248084077 0.0 21 8.928400035177896E-5 0.0 0.0 4.831826889037398 0.0 22 8.928400035177896E-5 0.0 0.0 5.076018629999513 0.0 23 8.928400035177896E-5 0.0 0.0 5.348156263071735 0.0 24 4.910620019347843E-4 0.0 0.0 5.56315213591882 0.0 25 4.910620019347843E-4 0.0 0.0 5.735782750598984 0.0 26 4.910620019347843E-4 0.0 0.0 5.904395585263319 0.0 27 4.910620019347843E-4 0.0 0.0 6.067517453906019 0.0 28 5.357040021106737E-4 0.0 0.0 6.246353306610632 0.0 29 5.357040021106737E-4 0.0 0.0 6.435144325354469 0.0 30 5.357040021106737E-4 0.0 0.0 6.6663452442654005 0.0 31 5.357040021106737E-4 0.0 0.0 6.87509123708786 0.0 32 5.357040021106737E-4 0.0 0.0 7.066560775842249 0.0 33 5.357040021106737E-4 0.0 0.0 7.26084276060772 0.0 34 5.803460022865632E-4 0.0 0.0 7.469231617428773 0.0 35 5.803460022865632E-4 0.0 0.0 7.713021580389305 0.0 36 5.803460022865632E-4 0.0 0.0 7.944356425300764 0.0 37 5.803460022865632E-4 0.0 0.0 8.153638122125335 0.0 38 5.803460022865632E-4 0.0 0.0 8.371267872982795 0.0 39 5.803460022865632E-4 0.0 0.0 8.591397575850106 0.0 40 5.803460022865632E-4 0.0 0.0 8.824339532767898 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGA 25 3.4182012E-5 46.0 28 CGAGTCA 25 3.4182012E-5 46.0 46 CGCGGAC 20 6.3127436E-4 46.0 39 CTATCGT 30 1.8621995E-6 46.0 24 GCGCGTT 30 1.8621995E-6 46.0 26 ATTACGC 25 3.4182012E-5 46.0 25 ATTCCCG 25 3.4182012E-5 46.0 30 AATGCGC 30 1.8621995E-6 46.0 23 TCGGACT 20 6.3127436E-4 46.0 39 TCTACGA 30 1.8621995E-6 46.0 29 GCGATCG 20 6.3127436E-4 46.0 9 TTAACGG 120 0.0 46.0 2 TCCAACG 25 3.4182012E-5 46.0 17 GTGCGTA 25 3.4182012E-5 46.0 16 ATCGCGA 20 6.3127436E-4 46.0 42 CCCGCGA 20 6.3127436E-4 46.0 33 TGCGTAA 25 3.4182012E-5 46.0 13 TGCCGAT 20 6.3127436E-4 46.0 23 CCGTAAA 35 1.0201438E-7 45.999996 39 TTCGCTA 45 3.110472E-10 45.999996 26 >>END_MODULE